Wall clock time and date at job start Wed Apr 1 2020 00:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 113.99725 * 2 1 4 4 C 1.50709 * 109.47121 * 179.97438 * 3 2 1 5 5 N 1.28648 * 124.72106 * 89.99144 * 4 3 2 6 6 C 1.33559 * 115.76447 * 180.02562 * 5 4 3 7 7 C 1.47267 * 123.13859 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00177 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00008 * 359.96479 * 7 6 5 10 10 C 1.46506 * 120.00009 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.45558 * 34.97325 * 10 9 7 12 12 C 1.53041 * 109.45998 * 275.00150 * 10 9 7 13 13 C 1.53193 * 109.30958 * 178.61686 * 12 10 9 14 14 N 1.46922 * 108.78035 * 54.63341 * 13 12 10 15 15 C 1.36934 * 120.63051 * 126.36778 * 14 13 12 16 16 H 1.07997 * 119.99755 * 221.18430 * 15 14 13 17 17 C 1.38814 * 120.00102 * 41.18863 * 15 14 13 18 18 N 1.31619 * 119.99710 * 214.83855 * 17 15 14 19 19 Si 1.86801 * 120.00132 * 34.83316 * 17 15 14 20 20 H 1.48493 * 109.47000 * 84.62723 * 19 17 15 21 21 H 1.48495 * 109.47194 * 204.63280 * 19 17 15 22 22 H 1.48507 * 109.46945 * 324.62940 * 19 17 15 23 23 C 1.46927 * 118.73477 * 306.39241 * 14 13 12 24 24 H 1.09002 * 109.58704 * 293.81820 * 23 14 13 25 25 C 1.53001 * 109.58502 * 173.53736 * 23 14 13 26 26 C 1.53041 * 109.46071 * 154.93150 * 10 9 7 27 27 C 1.35200 * 113.71752 * 0.02562 * 6 5 4 28 28 S 1.70775 * 124.71802 * 270.28834 * 4 3 2 29 29 H 1.09000 * 109.47499 * 300.00475 * 1 2 3 30 30 H 1.09000 * 109.46779 * 60.00286 * 1 2 3 31 31 H 1.09003 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47793 * 59.99793 * 3 2 1 33 33 H 1.08998 * 109.47649 * 299.99245 * 3 2 1 34 34 H 0.97004 * 120.00353 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.49570 * 298.56675 * 12 10 9 36 36 H 1.08997 * 109.50158 * 58.66157 * 12 10 9 37 37 H 1.09003 * 109.58397 * 174.42485 * 13 12 10 38 38 H 1.09001 * 109.58222 * 294.69930 * 13 12 10 39 39 H 0.96998 * 119.99536 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47028 * 59.99679 * 25 23 14 41 41 H 1.08994 * 109.47348 * 179.97438 * 25 23 14 42 42 H 1.08997 * 109.47327 * 299.99898 * 25 23 14 43 43 H 1.09001 * 109.49307 * 301.33970 * 26 10 9 44 44 H 1.08999 * 109.49549 * 61.43319 * 26 10 9 45 45 H 1.08001 * 125.58752 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2434 1.1283 -1.0565 6 6 5.5585 1.0237 -0.8480 7 6 6.5431 0.9459 -1.9403 8 8 7.7286 0.8521 -1.6850 9 7 6.1306 0.9785 -3.2230 10 6 7.1102 0.9017 -4.3097 11 1 7.9295 0.2463 -4.0142 12 6 7.6567 2.3007 -4.6033 13 6 8.7056 2.2115 -5.7162 14 7 8.1063 1.5416 -6.8784 15 6 8.1382 2.1285 -8.1152 16 1 7.2699 2.0851 -8.7560 17 6 9.2864 2.7792 -8.5453 18 7 9.1906 3.8539 -9.2991 19 14 10.9676 2.1297 -8.0542 20 1 11.3809 1.0614 -8.9992 21 1 11.9570 3.2364 -8.0945 22 1 10.9013 1.5749 -6.6782 23 6 7.4718 0.2301 -6.6883 24 1 8.2284 -0.5060 -6.4165 25 6 6.7816 -0.1986 -7.9847 26 6 6.4367 0.3415 -5.5646 27 6 5.9013 0.9960 0.4596 28 16 4.4810 1.1029 1.4047 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 5.1851 1.0536 -3.4267 35 1 6.8415 2.9500 -4.9228 36 1 8.1156 2.7085 -3.7027 37 1 9.0259 3.2146 -5.9977 38 1 9.5639 1.6392 -5.3643 39 1 9.9930 4.3088 -9.5994 40 1 7.5195 -0.2656 -8.7841 41 1 6.3120 -1.1717 -7.8418 42 1 6.0221 0.5360 -8.2521 43 1 6.0272 -0.6452 -5.3479 44 1 5.6330 1.0092 -5.8750 45 1 6.9074 0.9155 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948085906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:33 Heat of formation + Delta-G solvation = -36.731741 kcal Electronic energy + Delta-G solvation = -27080.637521 eV Core-core repulsion = 23224.887799 eV Total energy + Delta-G solvation = -3855.749722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70692 -40.35455 -39.24676 -38.61812 -36.18829 -34.27244 -33.25596 -32.71216 -31.75594 -29.19161 -28.20675 -27.15344 -26.69015 -25.64138 -24.00524 -22.88353 -21.86819 -21.36925 -20.80792 -19.82423 -18.40395 -17.79006 -17.58770 -17.17298 -17.02558 -16.69445 -16.42435 -16.34832 -16.29868 -15.49121 -15.26859 -15.14548 -14.88689 -14.73630 -14.54129 -14.43703 -13.96735 -13.67426 -13.36581 -13.15446 -13.02509 -12.79835 -12.71555 -12.58210 -12.47906 -12.34975 -12.12142 -11.94191 -11.68041 -11.62546 -11.47116 -11.14805 -10.98605 -10.78347 -10.67957 -10.48399 -10.24637 -9.93057 -8.65118 -8.25017 -5.50567 -0.62445 0.16030 0.49755 0.75573 1.36529 1.43653 1.52609 2.10195 2.18646 2.48050 2.63121 2.94083 3.18817 3.40175 3.69648 3.79411 3.95174 4.03065 4.15935 4.19505 4.20683 4.27826 4.42487 4.51577 4.56689 4.60613 4.62201 4.64170 4.70887 4.76856 4.90058 4.93329 4.98703 5.04123 5.07658 5.09249 5.24220 5.42798 5.48876 5.59394 5.95407 6.09217 6.21578 6.28901 6.55179 7.01979 7.07249 7.66808 8.18358 8.94695 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002494 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.509365 B =11225.454959 C =12051.264891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.138 3.862 4 C -0.003 4.003 5 N -0.448 5.448 6 C -0.015 4.015 7 C 0.588 3.412 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.158 3.842 11 H 0.071 0.929 12 C -0.129 4.129 13 C 0.147 3.853 14 N -0.606 5.606 15 C -0.254 4.254 16 H 0.053 0.947 17 C 0.000 4.000 18 N -0.925 5.925 19 Si 0.895 3.105 20 H -0.290 1.290 21 H -0.303 1.303 22 H -0.249 1.249 23 C 0.159 3.841 24 H 0.033 0.967 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.234 4.234 28 S 0.329 5.671 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.912 -7.437 26.069 33.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.059 3.941 4 C -0.282 4.282 5 N -0.166 5.166 6 C -0.151 4.151 7 C 0.373 3.627 8 O -0.451 6.451 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.089 0.911 12 C -0.169 4.169 13 C 0.021 3.979 14 N -0.331 5.331 15 C -0.384 4.384 16 H 0.070 0.930 17 C -0.198 4.198 18 N -0.568 5.568 19 Si 0.723 3.277 20 H -0.218 1.218 21 H -0.230 1.230 22 H -0.174 1.174 23 C 0.054 3.946 24 H 0.051 0.949 25 C -0.183 4.183 26 C -0.159 4.159 27 C -0.377 4.377 28 S 0.586 5.414 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.408 -7.529 26.661 33.261 hybrid contribution 1.568 0.341 -1.404 2.132 sum -16.840 -7.188 25.256 31.195 Atomic orbital electron populations 1.22994 0.78195 1.04171 1.01609 1.87906 1.22269 1.27038 1.95800 1.20984 0.82628 0.86073 1.04440 1.27141 1.02143 1.06115 0.92811 1.66835 1.02833 1.13880 1.33044 1.20199 0.90122 1.11164 0.93613 1.17442 0.86702 0.75900 0.82660 1.90792 1.17696 1.52297 1.84348 1.45924 1.11631 1.72378 1.04576 1.20813 0.91205 0.96451 0.86128 0.91083 1.22242 0.99551 0.97116 0.98011 1.21173 0.93730 0.95990 0.86997 1.44551 1.67277 1.17551 1.03759 1.18499 0.96140 1.29599 0.94137 0.92976 1.26047 1.00431 0.96500 0.96864 1.70159 1.29737 1.16536 1.40336 0.86520 0.82991 0.78293 0.79946 1.21754 1.22977 1.17369 1.20741 0.93021 0.86282 0.94575 0.94949 1.21678 0.99784 1.00431 0.96418 1.22183 0.98748 1.01704 0.93289 1.27012 1.08324 1.05287 0.97042 1.82424 0.91158 1.60036 1.07750 0.91709 0.93020 0.88626 0.87428 0.89637 0.74861 0.92168 0.92587 0.93641 0.95855 0.92906 0.93883 0.90344 0.93598 0.89274 0.91279 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.00 10.69 -148.98 -1.59 -7.59 16 3 C 0.14 1.59 6.51 71.24 0.46 2.05 16 4 C 0.00 -0.06 6.97 88.58 0.62 0.56 16 5 N -0.45 -10.48 10.12 -180.83 -1.83 -12.31 16 6 C -0.02 -0.39 6.70 40.56 0.27 -0.12 16 7 C 0.59 18.68 7.76 86.62 0.67 19.36 16 8 O -0.57 -21.61 16.37 -4.13 -0.07 -21.68 16 9 N -0.70 -20.81 5.07 -445.80 -2.26 -23.07 16 10 C 0.16 5.35 2.42 45.02 0.11 5.45 16 11 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 12 C -0.13 -4.94 5.65 30.67 0.17 -4.77 16 13 C 0.15 6.65 4.59 86.36 0.40 7.04 16 14 N -0.61 -28.58 2.47 -675.24 -1.67 -30.24 16 15 C -0.25 -14.07 8.42 84.03 0.71 -13.37 16 16 H 0.05 3.11 6.83 -2.91 -0.02 3.09 16 17 C 0.00 0.03 4.82 84.86 0.41 0.44 16 18 N -0.93 -57.26 13.97 21.65 0.30 -56.96 16 19 Si 0.90 45.75 27.39 68.60 1.88 47.63 16 20 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 21 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 22 H -0.25 -12.20 5.24 99.48 0.52 -11.68 16 23 C 0.16 6.11 3.49 44.97 0.16 6.26 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 C -0.13 -4.49 8.08 71.98 0.58 -3.91 16 26 C -0.12 -3.78 4.85 30.67 0.15 -3.64 16 27 C -0.23 -4.62 10.62 67.12 0.71 -3.91 16 28 S 0.33 3.99 22.92 -56.49 -1.29 2.70 16 29 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.41 11.02 8.12 -92.71 -0.75 10.27 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.24 7.02 -2.39 -0.02 2.23 16 38 H 0.02 1.08 6.71 -2.39 -0.02 1.06 16 39 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.04 1.71 7.68 -2.39 -0.02 1.69 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.72 7.41 -2.39 -0.02 1.71 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.20 3.54 8.03 -2.91 -0.02 3.52 16 Total: -1.00 -73.89 377.58 0.21 -73.68 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.07 Total: 14.95 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.67 Total: 12.89 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -5.46 Total: -122.59 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.66 Total: -29.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.29 Total: 2.70 kcal Total: -73.89 0.21 -73.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.951 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds