Wall clock time and date at job start Wed Apr 1 2020 00:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00585 * 2 1 4 4 C 1.50691 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.28659 * 124.72034 * 89.99668 * 4 3 2 6 6 C 1.33558 * 115.76649 * 180.02562 * 5 4 3 7 7 C 1.47263 * 123.14202 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00195 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99921 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99966 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46207 * 325.02786 * 10 9 7 12 12 C 1.53044 * 109.45821 * 85.00102 * 10 9 7 13 13 C 1.53190 * 109.30846 * 181.38440 * 12 10 9 14 14 N 1.46924 * 108.78065 * 305.36429 * 13 12 10 15 15 C 1.36932 * 120.63239 * 233.63708 * 14 13 12 16 16 H 1.08007 * 119.99999 * 150.15409 * 15 14 13 17 17 C 1.38813 * 120.00201 * 330.14361 * 15 14 13 18 18 N 1.31618 * 119.99598 * 344.50800 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 164.50240 * 17 15 14 20 20 H 1.48499 * 109.47347 * 60.00743 * 19 17 15 21 21 H 1.48501 * 109.46894 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47182 * 300.00072 * 19 17 15 23 23 C 1.46925 * 118.73773 * 53.60668 * 14 13 12 24 24 H 1.09003 * 109.58312 * 66.18422 * 23 14 13 25 25 C 1.53000 * 109.58833 * 186.46235 * 23 14 13 26 26 C 1.53040 * 109.45985 * 205.07074 * 10 9 7 27 27 C 1.35216 * 113.71766 * 359.97438 * 6 5 4 28 28 S 1.70773 * 124.72269 * 269.69856 * 4 3 2 29 29 H 1.08999 * 109.46737 * 60.00320 * 1 2 3 30 30 H 1.08998 * 109.46945 * 300.00335 * 1 2 3 31 31 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46771 * 299.99812 * 3 2 1 33 33 H 1.09001 * 109.46786 * 59.99289 * 3 2 1 34 34 H 0.96999 * 119.99631 * 0.02562 * 9 7 6 35 35 H 1.08990 * 109.49689 * 301.33517 * 12 10 9 36 36 H 1.09004 * 109.49262 * 61.43473 * 12 10 9 37 37 H 1.08997 * 109.58789 * 65.15462 * 13 12 10 38 38 H 1.09002 * 109.58213 * 185.57877 * 13 12 10 39 39 H 0.97001 * 119.99635 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46626 * 60.00664 * 25 23 14 41 41 H 1.09000 * 109.47075 * 179.97438 * 25 23 14 42 42 H 1.08994 * 109.47116 * 300.00661 * 25 23 14 43 43 H 1.09006 * 109.49564 * 298.56504 * 26 10 9 44 44 H 1.09001 * 109.49873 * 58.66016 * 26 10 9 45 45 H 1.07995 * 125.58654 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 7 4.2435 1.1282 -1.0566 6 6 5.5585 1.0235 -0.8481 7 6 6.5431 0.9457 -1.9404 8 8 7.7286 0.8517 -1.6851 9 7 6.1306 0.9786 -3.2231 10 6 7.1102 0.9018 -4.3098 11 1 8.0220 1.4207 -4.0141 12 6 7.4311 -0.5654 -4.6041 13 6 8.4811 -0.6409 -5.7169 14 7 7.9941 0.1150 -6.8788 15 6 7.9337 -0.4691 -8.1158 16 1 7.1846 -0.1526 -8.8265 17 6 8.8354 -1.4680 -8.4565 18 7 9.9225 -1.6467 -7.7364 19 14 8.5058 -2.5586 -9.9368 20 1 8.4201 -1.7207 -11.1598 21 1 9.6110 -3.5394 -10.0848 22 1 7.2243 -3.2833 -9.7422 23 6 7.5724 1.5095 -6.6881 24 1 8.4349 2.1180 -6.4161 25 6 6.9579 2.0414 -7.9844 26 6 6.5326 1.5610 -5.5643 27 6 5.9015 0.9966 0.4595 28 16 4.4822 1.1171 1.4046 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 -0.8901 33 1 1.6886 1.8463 0.8899 34 1 5.1853 1.0539 -3.4267 35 1 7.8205 -1.0403 -3.7036 36 1 6.5244 -1.0790 -4.9238 37 1 9.4177 -0.2078 -5.3657 38 1 8.6405 -1.6817 -5.9988 39 1 10.5525 -2.3449 -7.9742 40 1 6.0928 1.4347 -8.2519 41 1 6.6454 3.0757 -7.8407 42 1 7.6972 1.9925 -8.7838 43 1 5.6344 1.0273 -5.8751 44 1 6.2825 2.5995 -5.3473 45 1 6.9076 0.9162 0.8439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948085908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:40 Heat of formation + Delta-G solvation = -38.864976 kcal Electronic energy + Delta-G solvation = -27058.286564 eV Core-core repulsion = 23202.444337 eV Total energy + Delta-G solvation = -3855.842226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70075 -40.31417 -39.18086 -38.61066 -36.17896 -34.23745 -33.10357 -32.59633 -31.29323 -29.18817 -28.11490 -27.18799 -26.76615 -25.75630 -23.74030 -22.87916 -21.89238 -21.28053 -20.77547 -19.80212 -18.30220 -17.76687 -17.57969 -17.14889 -17.05064 -16.70046 -16.40694 -16.35619 -15.79814 -15.61129 -15.30327 -15.03802 -14.93275 -14.72292 -14.53437 -14.26847 -13.67699 -13.34769 -13.15020 -13.05301 -12.95550 -12.73667 -12.69220 -12.63597 -12.38426 -12.34706 -12.12733 -11.89682 -11.74191 -11.53692 -11.49234 -11.09576 -10.98088 -10.78322 -10.67173 -10.54870 -10.22103 -9.91765 -8.64745 -7.83868 -5.30779 -0.62672 0.16128 0.49762 0.75588 1.47281 1.50134 1.56260 2.08930 2.20984 2.52863 2.64054 3.18978 3.32362 3.57804 3.70951 3.82652 4.01306 4.03935 4.16008 4.20295 4.24023 4.35696 4.42934 4.56219 4.58685 4.62642 4.67468 4.72240 4.73743 4.80790 4.93286 4.93432 5.03290 5.06099 5.13268 5.36361 5.42541 5.51136 5.54405 5.68716 5.72712 6.10276 6.21912 6.43144 6.56066 7.08630 7.16764 7.88158 8.42039 9.23755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.002451 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.512951 B =11420.834432 C =11993.613679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.139 3.861 4 C -0.003 4.003 5 N -0.447 5.447 6 C -0.014 4.014 7 C 0.586 3.414 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.161 3.839 11 H 0.062 0.938 12 C -0.131 4.131 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.251 4.251 16 H 0.080 0.920 17 C -0.056 4.056 18 N -0.941 5.941 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.299 1.299 22 H -0.278 1.278 23 C 0.161 3.839 24 H 0.014 0.986 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.235 4.235 28 S 0.331 5.669 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.044 0.956 36 H 0.057 0.943 37 H -0.009 1.009 38 H 0.055 0.945 39 H 0.247 0.753 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.336 9.468 21.054 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.059 3.941 4 C -0.282 4.282 5 N -0.165 5.165 6 C -0.150 4.150 7 C 0.371 3.629 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.056 3.944 11 H 0.081 0.919 12 C -0.171 4.171 13 C 0.059 3.941 14 N -0.326 5.326 15 C -0.381 4.381 16 H 0.097 0.903 17 C -0.251 4.251 18 N -0.587 5.587 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.226 1.226 22 H -0.205 1.205 23 C 0.054 3.946 24 H 0.032 0.968 25 C -0.183 4.183 26 C -0.157 4.157 27 C -0.378 4.378 28 S 0.588 5.412 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.252 0.748 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.774 9.192 21.696 31.413 hybrid contribution 0.927 -0.888 -1.764 2.181 sum -19.847 8.305 19.932 29.328 Atomic orbital electron populations 1.22988 0.78179 1.04100 1.01674 1.87916 1.22306 1.27198 1.95809 1.20999 0.82498 0.86019 1.04560 1.27168 1.02197 1.06071 0.92772 1.66836 1.02722 1.13916 1.33053 1.20178 0.90141 1.11164 0.93538 1.17497 0.86733 0.75938 0.82754 1.90800 1.17919 1.52289 1.84369 1.45924 1.11612 1.72292 1.04566 1.20780 0.91499 0.95854 0.86251 0.91940 1.22323 1.00162 0.96392 0.98206 1.20419 0.91493 0.96781 0.85401 1.44402 1.75639 1.07994 1.04602 1.19508 1.09741 1.16255 0.92618 0.90282 1.25900 0.94911 1.03285 1.01001 1.70195 1.11096 1.34419 1.42990 0.85372 0.76699 0.78655 0.79922 1.19792 1.22571 1.20451 1.20629 0.93916 0.85258 0.94755 0.96833 1.21702 1.00181 1.00255 0.96200 1.22191 0.99356 1.00910 0.93247 1.27015 1.08390 1.05285 0.97071 1.82385 0.91059 1.60028 1.07704 0.92921 0.91586 0.88844 0.89432 0.87280 0.74830 0.93722 0.92379 0.99097 0.92675 0.94379 0.92691 0.90429 0.93932 0.90914 0.89339 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.47 10.69 -148.98 -1.59 -8.06 16 3 C 0.14 1.64 6.51 71.23 0.46 2.11 16 4 C 0.00 -0.06 6.97 88.57 0.62 0.56 16 5 N -0.45 -10.94 10.12 -180.83 -1.83 -12.77 16 6 C -0.01 -0.40 6.70 40.56 0.27 -0.13 16 7 C 0.59 20.12 7.76 86.62 0.67 20.79 16 8 O -0.57 -23.63 16.37 -4.13 -0.07 -23.70 16 9 N -0.69 -22.50 5.07 -445.81 -2.26 -24.77 16 10 C 0.16 6.01 2.42 45.02 0.11 6.12 16 11 H 0.06 2.62 7.57 -2.39 -0.02 2.61 16 12 C -0.13 -5.65 5.65 30.67 0.17 -5.48 16 13 C 0.19 9.70 5.28 86.36 0.46 10.16 16 14 N -0.60 -30.77 2.99 -675.23 -2.02 -32.79 16 15 C -0.25 -13.72 8.57 84.03 0.72 -13.00 16 16 H 0.08 4.09 6.24 -2.91 -0.02 4.08 16 17 C -0.06 -3.20 4.94 84.86 0.42 -2.78 16 18 N -0.94 -57.74 11.23 21.65 0.24 -57.50 16 19 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 C 0.16 6.64 3.49 44.97 0.16 6.80 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 25 C -0.13 -4.51 7.96 71.98 0.57 -3.93 16 26 C -0.12 -3.97 4.85 30.67 0.15 -3.82 16 27 C -0.23 -5.00 10.62 67.12 0.71 -4.29 16 28 S 0.33 4.31 22.92 -56.49 -1.29 3.01 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.41 11.72 8.12 -92.71 -0.75 10.97 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.05 3.22 6.15 -2.39 -0.01 3.21 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.05 1.94 7.43 -2.39 -0.02 1.93 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.68 7.63 -2.39 -0.02 1.66 16 43 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.20 3.87 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -75.50 380.20 0.21 -75.29 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.25 Total: 18.95 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.74 Total: 14.56 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -5.86 Total: -127.82 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.66 Total: -31.76 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.29 Total: 3.01 kcal Total: -75.50 0.21 -75.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.425 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds