Wall clock time and date at job start Wed Apr 1 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99909 * 2 1 4 4 C 1.50708 * 109.46858 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80323 * 89.69664 * 4 3 2 6 6 C 1.30943 * 117.36314 * 179.83607 * 5 4 3 7 7 C 1.35661 * 114.19096 * 0.44720 * 6 5 4 8 8 C 1.46677 * 126.12923 * 179.74415 * 7 6 5 9 9 O 1.21687 * 120.00040 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00027 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00179 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.49684 * 324.99832 * 11 10 8 13 13 C 1.53197 * 109.49868 * 85.06099 * 11 10 8 14 14 N 1.46932 * 108.76967 * 174.55278 * 13 11 10 15 15 C 1.36943 * 120.60272 * 126.42597 * 14 13 11 16 16 H 1.07997 * 119.99956 * 207.70844 * 15 14 13 17 17 C 1.38817 * 119.99695 * 27.70444 * 15 14 13 18 18 N 1.31619 * 120.00285 * 17.35378 * 17 15 14 19 19 Si 1.86796 * 119.99614 * 197.35317 * 17 15 14 20 20 H 1.48501 * 109.47440 * 60.00011 * 19 17 15 21 21 H 1.48503 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47468 * 300.00230 * 19 17 15 23 23 C 1.46921 * 118.76914 * 306.44416 * 14 13 11 24 24 C 1.53199 * 108.77395 * 53.58966 * 23 14 13 25 25 C 1.53039 * 109.31234 * 305.36407 * 24 23 14 26 26 H 1.08997 * 109.45417 * 301.35467 * 25 24 23 27 27 C 1.52997 * 109.45905 * 181.38285 * 25 24 23 28 28 S 1.70948 * 124.80402 * 270.00222 * 4 3 2 29 29 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46934 * 299.99873 * 1 2 3 31 31 H 1.09000 * 109.47414 * 59.99394 * 1 2 3 32 32 H 1.08998 * 109.47811 * 300.00086 * 3 2 1 33 33 H 1.08997 * 109.46916 * 60.00442 * 3 2 1 34 34 H 1.07996 * 122.90161 * 180.21513 * 6 5 4 35 35 H 0.96999 * 120.00050 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.58303 * 294.37587 * 13 11 10 37 37 H 1.09006 * 109.58380 * 54.80044 * 13 11 10 38 38 H 0.96994 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.58929 * 293.80709 * 23 14 13 40 40 H 1.09002 * 109.70760 * 173.44098 * 23 14 13 41 41 H 1.08997 * 109.50035 * 185.41451 * 24 23 14 42 42 H 1.09004 * 109.49507 * 65.31500 * 24 23 14 43 43 H 1.09000 * 109.47594 * 299.93185 * 27 25 24 44 44 H 1.08996 * 109.47023 * 59.94087 * 27 25 24 45 45 H 1.09006 * 109.47227 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2481 1.1226 -1.0637 6 6 5.5429 1.0243 -0.8947 7 6 5.9332 0.9934 0.4041 8 6 7.3127 0.8830 0.8902 9 8 8.2331 0.8094 0.0976 10 7 7.5609 0.8630 2.2148 11 6 8.9387 0.7533 2.7003 12 1 9.5122 0.1166 2.0267 13 6 9.5749 2.1460 2.7527 14 7 10.9068 2.0347 3.3632 15 6 12.0109 2.5302 2.7224 16 1 12.9815 2.0919 2.9020 17 6 11.8826 3.5957 1.8419 18 7 10.8017 4.3461 1.8700 19 14 13.2440 3.9643 0.6172 20 1 13.4448 2.7893 -0.2684 21 1 12.8666 5.1437 -0.2025 22 1 14.5034 4.2534 1.3490 23 6 11.0318 1.3817 4.6734 24 6 10.3796 -0.0025 4.5986 25 6 8.9387 0.1429 4.1038 26 1 8.3857 0.7925 4.7822 27 6 8.2732 -1.2340 4.0607 28 16 4.4858 1.1090 1.4026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8465 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 6.2394 0.9685 -1.7182 35 1 6.8273 0.9220 2.8466 36 1 9.6675 2.5436 1.7421 37 1 8.9525 2.8096 3.3531 38 1 10.7122 5.0908 1.2550 39 1 10.5281 1.9825 5.4306 40 1 12.0853 1.2757 4.9322 41 1 10.3799 -0.4588 5.5885 42 1 10.9400 -0.6318 3.9072 43 1 8.8257 -1.8837 3.3819 44 1 8.2730 -1.6689 5.0602 45 1 7.2468 -1.1307 3.7087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968692981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:29 Heat of formation + Delta-G solvation = -13.011560 kcal Electronic energy + Delta-G solvation = -27340.520610 eV Core-core repulsion = 23485.799472 eV Total energy + Delta-G solvation = -3854.721138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.23344 -39.36125 -38.16459 -37.49248 -34.39578 -33.18642 -31.78029 -30.97817 -29.44705 -28.25577 -27.32534 -26.51373 -24.37453 -24.00957 -22.78391 -21.29506 -20.86241 -19.92022 -19.16176 -18.56476 -17.01138 -16.95472 -16.77887 -16.15202 -15.78169 -15.28128 -15.10184 -14.73934 -14.57183 -13.96245 -13.89488 -13.74426 -13.53391 -13.36261 -13.09954 -12.98913 -12.75719 -12.42649 -12.06336 -11.89641 -11.74988 -11.64914 -11.60555 -10.89885 -10.70988 -10.67050 -10.47195 -10.30160 -10.18753 -10.08383 -9.99334 -9.90700 -9.64548 -9.59420 -9.49677 -9.15815 -8.61863 -8.42024 -6.66412 -5.75406 -3.18424 0.06018 0.96821 1.40121 2.32660 3.25752 3.31049 3.44157 3.46430 3.50140 3.52550 4.00625 4.50287 4.54688 4.82990 4.89356 4.91539 4.96962 5.02297 5.14164 5.21765 5.24526 5.25174 5.37788 5.50640 5.58667 5.88530 5.95983 5.97930 6.00393 6.09321 6.22208 6.35908 6.44110 6.48142 6.56283 6.69643 6.72785 6.85237 6.95457 7.25004 7.42562 7.70467 7.75071 7.84630 8.42050 8.48882 9.22882 9.87008 10.41497 11.32701 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.003019 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.811033 B = 9272.529221 C =10578.449034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.039 3.961 5 N -0.457 5.457 6 C 0.109 3.891 7 C -0.268 4.268 8 C 0.589 3.411 9 O -0.512 6.512 10 N -0.710 5.710 11 C 0.124 3.876 12 H 0.086 0.914 13 C 0.166 3.834 14 N -0.587 5.587 15 C -0.257 4.257 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.142 3.858 24 C -0.125 4.125 25 C -0.093 4.093 26 H 0.067 0.933 27 C -0.145 4.145 28 S 0.188 5.812 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.192 0.808 35 H 0.389 0.611 36 H 0.096 0.904 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.447 -8.407 2.193 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.236 4.236 5 N -0.173 5.173 6 C -0.048 4.048 7 C -0.392 4.392 8 C 0.372 3.628 9 O -0.389 6.389 10 N -0.360 5.360 11 C 0.019 3.981 12 H 0.104 0.896 13 C 0.039 3.961 14 N -0.310 5.310 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.016 3.984 24 C -0.165 4.165 25 C -0.112 4.112 26 H 0.086 0.914 27 C -0.203 4.203 28 S 0.444 5.556 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.208 0.792 35 H 0.223 0.777 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.184 -8.427 2.126 21.976 hybrid contribution 0.586 0.503 -1.107 1.350 sum -19.598 -7.924 1.018 21.164 Atomic orbital electron populations 1.22814 0.79917 1.03364 1.00396 1.87969 1.20363 1.26239 1.95540 1.20816 0.84386 0.86119 1.02738 1.26845 1.00480 1.04526 0.91722 1.66140 1.05025 1.14895 1.31212 1.22187 0.90413 0.96416 0.95822 1.26119 0.98489 1.16784 0.97833 1.16646 0.85446 0.77557 0.83115 1.90898 1.43851 1.49172 1.54952 1.45986 1.10306 1.74110 1.05582 1.22110 0.79957 1.01967 0.94067 0.89604 1.21112 0.84772 0.89352 1.00874 1.43943 1.04025 1.67219 1.15798 1.19101 0.87929 1.10082 1.21555 0.91603 1.25032 0.97526 0.95397 1.01292 1.69999 1.28509 1.17770 1.38013 0.86367 0.81408 0.77473 0.81510 1.20840 1.21635 1.20912 1.20965 0.98290 0.90711 0.88478 1.22074 0.94593 1.00073 0.99739 1.21314 0.97557 0.95963 0.96335 0.91427 1.21862 1.00036 0.97207 1.01147 1.83755 0.96760 1.64063 1.11027 0.89090 0.93615 0.93546 0.89762 0.90598 0.79164 0.77713 0.88577 0.96438 0.93584 0.96400 0.92537 0.92511 0.92020 0.92815 0.92965 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.65 10.69 -35.23 -0.38 -4.03 16 3 C 0.14 1.19 6.51 36.01 0.23 1.42 16 4 C 0.04 0.46 7.02 -13.29 -0.09 0.37 16 5 N -0.46 -6.36 10.51 -11.50 -0.12 -6.48 16 6 C 0.11 1.59 11.09 -18.85 -0.21 1.38 16 7 C -0.27 -3.99 6.48 -37.10 -0.24 -4.23 16 8 C 0.59 10.68 7.75 -12.85 -0.10 10.58 16 9 O -0.51 -11.45 16.53 5.20 0.09 -11.37 16 10 N -0.71 -11.78 4.36 -55.00 -0.24 -12.02 16 11 C 0.12 2.39 2.06 -67.81 -0.14 2.25 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 13 C 0.17 4.01 4.88 -3.70 -0.02 4.00 16 14 N -0.59 -14.78 3.00 -172.31 -0.52 -15.30 16 15 C -0.26 -7.19 9.59 -15.05 -0.14 -7.34 16 16 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 17 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 18 N -0.90 -26.80 11.19 55.49 0.62 -26.17 16 19 Si 0.90 22.59 29.59 -169.99 -5.03 17.56 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.14 2.90 6.51 -3.71 -0.02 2.88 16 24 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 25 C -0.09 -1.46 2.27 -90.58 -0.21 -1.67 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 C -0.15 -1.88 9.02 37.16 0.34 -1.54 16 28 S 0.19 2.09 22.31 -107.50 -2.40 -0.31 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 35 H 0.39 5.28 7.49 -40.82 -0.31 4.97 16 36 H 0.10 2.75 6.04 -51.93 -0.31 2.43 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -34.05 382.32 -8.79 -42.84 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.85 Total: 2.24 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.28 Total: 7.27 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.26 Total: -59.97 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.29 Total: -15.39 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.40 Total: -0.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.05 -8.79 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.828 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds