Wall clock time and date at job start Wed Apr 1 2020 00:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99909 * 2 1 4 4 C 1.50708 * 109.46858 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80323 * 89.69664 * 4 3 2 6 6 C 1.30943 * 117.36314 * 179.83607 * 5 4 3 7 7 C 1.35661 * 114.19096 * 0.44720 * 6 5 4 8 8 C 1.46677 * 126.12923 * 179.74415 * 7 6 5 9 9 O 1.21687 * 120.00040 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00027 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00179 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.49684 * 324.99832 * 11 10 8 13 13 C 1.53197 * 109.49868 * 85.06099 * 11 10 8 14 14 N 1.46932 * 108.76967 * 174.55278 * 13 11 10 15 15 C 1.36943 * 120.60272 * 126.42597 * 14 13 11 16 16 H 1.07997 * 119.99956 * 207.70844 * 15 14 13 17 17 C 1.38817 * 119.99695 * 27.70444 * 15 14 13 18 18 N 1.31619 * 120.00285 * 17.35378 * 17 15 14 19 19 Si 1.86796 * 119.99614 * 197.35317 * 17 15 14 20 20 H 1.48501 * 109.47440 * 60.00011 * 19 17 15 21 21 H 1.48503 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47468 * 300.00230 * 19 17 15 23 23 C 1.46921 * 118.76914 * 306.44416 * 14 13 11 24 24 C 1.53199 * 108.77395 * 53.58966 * 23 14 13 25 25 C 1.53039 * 109.31234 * 305.36407 * 24 23 14 26 26 H 1.08997 * 109.45417 * 301.35467 * 25 24 23 27 27 C 1.52997 * 109.45905 * 181.38285 * 25 24 23 28 28 S 1.70948 * 124.80402 * 270.00222 * 4 3 2 29 29 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46934 * 299.99873 * 1 2 3 31 31 H 1.09000 * 109.47414 * 59.99394 * 1 2 3 32 32 H 1.08998 * 109.47811 * 300.00086 * 3 2 1 33 33 H 1.08997 * 109.46916 * 60.00442 * 3 2 1 34 34 H 1.07996 * 122.90161 * 180.21513 * 6 5 4 35 35 H 0.96999 * 120.00050 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.58303 * 294.37587 * 13 11 10 37 37 H 1.09006 * 109.58380 * 54.80044 * 13 11 10 38 38 H 0.96994 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.58929 * 293.80709 * 23 14 13 40 40 H 1.09002 * 109.70760 * 173.44098 * 23 14 13 41 41 H 1.08997 * 109.50035 * 185.41451 * 24 23 14 42 42 H 1.09004 * 109.49507 * 65.31500 * 24 23 14 43 43 H 1.09000 * 109.47594 * 299.93185 * 27 25 24 44 44 H 1.08996 * 109.47023 * 59.94087 * 27 25 24 45 45 H 1.09006 * 109.47227 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2481 1.1226 -1.0637 6 6 5.5429 1.0243 -0.8947 7 6 5.9332 0.9934 0.4041 8 6 7.3127 0.8830 0.8902 9 8 8.2331 0.8094 0.0976 10 7 7.5609 0.8630 2.2148 11 6 8.9387 0.7533 2.7003 12 1 9.5122 0.1166 2.0267 13 6 9.5749 2.1460 2.7527 14 7 10.9068 2.0347 3.3632 15 6 12.0109 2.5302 2.7224 16 1 12.9815 2.0919 2.9020 17 6 11.8826 3.5957 1.8419 18 7 10.8017 4.3461 1.8700 19 14 13.2440 3.9643 0.6172 20 1 13.4448 2.7893 -0.2684 21 1 12.8666 5.1437 -0.2025 22 1 14.5034 4.2534 1.3490 23 6 11.0318 1.3817 4.6734 24 6 10.3796 -0.0025 4.5986 25 6 8.9387 0.1429 4.1038 26 1 8.3857 0.7925 4.7822 27 6 8.2732 -1.2340 4.0607 28 16 4.4858 1.1090 1.4026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8465 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 6.2394 0.9685 -1.7182 35 1 6.8273 0.9220 2.8466 36 1 9.6675 2.5436 1.7421 37 1 8.9525 2.8096 3.3531 38 1 10.7122 5.0908 1.2550 39 1 10.5281 1.9825 5.4306 40 1 12.0853 1.2757 4.9322 41 1 10.3799 -0.4588 5.5885 42 1 10.9400 -0.6318 3.9072 43 1 8.8257 -1.8837 3.3819 44 1 8.2730 -1.6689 5.0602 45 1 7.2468 -1.1307 3.7087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968692981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:28 Heat of formation + Delta-G solvation = -37.708409 kcal Electronic energy + Delta-G solvation = -27341.591546 eV Core-core repulsion = 23485.799472 eV Total energy + Delta-G solvation = -3855.792074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46729 -40.64783 -39.17273 -38.69726 -36.15568 -34.78921 -32.93669 -32.68293 -30.83098 -29.39992 -28.89733 -27.12389 -25.95182 -25.23374 -24.17635 -22.78271 -22.36267 -21.41236 -20.45454 -19.65880 -18.77095 -18.10517 -17.61494 -17.30582 -16.90728 -16.55910 -16.37157 -16.17053 -15.78116 -15.54767 -15.32540 -15.16953 -15.02271 -14.83107 -14.49982 -14.10804 -13.73335 -13.59675 -13.31440 -13.26898 -13.07438 -12.77646 -12.71231 -12.59591 -12.39142 -12.36188 -12.21383 -11.92759 -11.65768 -11.59983 -11.26276 -11.22888 -10.89905 -10.75299 -10.69366 -10.55466 -10.23546 -10.10913 -8.70783 -7.90720 -5.35735 -0.99465 -0.02068 0.37905 1.21870 1.39977 1.46081 1.50425 1.92790 2.04735 2.48192 2.60812 3.24381 3.26290 3.59267 3.75441 3.77200 3.84827 3.97717 4.09766 4.14593 4.22653 4.35926 4.45686 4.55117 4.55569 4.61327 4.64978 4.72234 4.87411 4.91305 4.91696 4.96984 5.10033 5.16590 5.17226 5.25077 5.35681 5.43515 5.52133 5.60701 5.74555 6.04689 6.29999 6.37631 6.45912 7.03721 7.11838 7.83691 8.32600 9.14107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.003019 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.811033 B = 9272.529221 C =10578.449034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.135 3.865 4 C 0.042 3.958 5 N -0.482 5.482 6 C 0.110 3.890 7 C -0.307 4.307 8 C 0.589 3.411 9 O -0.567 6.567 10 N -0.697 5.697 11 C 0.140 3.860 12 H 0.055 0.945 13 C 0.178 3.822 14 N -0.608 5.608 15 C -0.264 4.264 16 H 0.069 0.931 17 C -0.050 4.050 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.135 3.865 24 C -0.115 4.115 25 C -0.086 4.086 26 H 0.082 0.918 27 C -0.137 4.137 28 S 0.265 5.735 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.183 0.817 35 H 0.407 0.593 36 H 0.045 0.955 37 H 0.002 0.998 38 H 0.247 0.753 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.846 -9.760 4.305 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.056 3.944 4 C -0.232 4.232 5 N -0.198 5.198 6 C -0.049 4.049 7 C -0.432 4.432 8 C 0.374 3.626 9 O -0.448 6.448 10 N -0.348 5.348 11 C 0.034 3.966 12 H 0.073 0.927 13 C 0.050 3.950 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.192 1.192 23 C 0.010 3.990 24 C -0.154 4.154 25 C -0.105 4.105 26 H 0.100 0.900 27 C -0.194 4.194 28 S 0.522 5.478 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.200 0.800 35 H 0.244 0.756 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.625 -9.806 4.310 25.033 hybrid contribution 1.199 0.921 -1.712 2.284 sum -21.426 -8.886 2.598 23.340 Atomic orbital electron populations 1.23031 0.77886 1.04350 1.01765 1.87917 1.22564 1.26616 1.95838 1.21081 0.82049 0.86411 1.04892 1.27619 1.02195 1.01750 0.91669 1.66221 1.04541 1.16633 1.32396 1.22204 0.91043 0.95795 0.95819 1.25792 0.98533 1.19728 0.99133 1.17067 0.86367 0.76168 0.82972 1.90859 1.46071 1.51604 1.56242 1.45762 1.09881 1.73536 1.05646 1.21640 0.80575 0.98312 0.96109 0.92702 1.20799 0.84877 0.91781 0.97501 1.44221 1.03524 1.67605 1.17846 1.19456 0.88987 1.09501 1.21468 0.91361 1.25774 0.99748 0.95845 1.03226 1.70152 1.30343 1.18318 1.38732 0.85438 0.79628 0.76697 0.79354 1.21224 1.22094 1.19177 1.21189 0.99072 0.92543 0.86169 1.21973 0.94355 0.97260 1.01853 1.21296 0.97804 0.97947 0.93459 0.89983 1.21793 1.00054 0.94750 1.02823 1.83354 0.93319 1.62282 1.08809 0.88403 0.91732 0.92672 0.88770 0.87296 0.79986 0.75599 0.93691 0.98040 0.94407 0.95883 0.92510 0.88313 0.93073 0.93749 0.89984 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.73 10.69 -148.98 -1.59 -8.32 16 3 C 0.14 1.90 6.51 71.24 0.46 2.37 16 4 C 0.04 0.90 7.02 88.46 0.62 1.52 16 5 N -0.48 -13.18 10.51 -190.30 -2.00 -15.18 16 6 C 0.11 3.33 11.09 84.23 0.93 4.26 16 7 C -0.31 -9.26 6.48 23.88 0.15 -9.11 16 8 C 0.59 22.21 7.75 86.45 0.67 22.88 16 9 O -0.57 -27.23 16.53 -4.31 -0.07 -27.30 16 10 N -0.70 -23.27 4.36 -446.13 -1.95 -25.22 16 11 C 0.14 5.46 2.06 45.07 0.09 5.56 16 12 H 0.05 2.51 7.58 -2.39 -0.02 2.50 16 13 C 0.18 8.96 4.88 86.36 0.42 9.38 16 14 N -0.61 -31.41 3.00 -699.05 -2.09 -33.50 16 15 C -0.26 -15.18 9.59 84.03 0.81 -14.38 16 16 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 18 N -0.93 -58.04 11.19 21.65 0.24 -57.80 16 19 Si 0.96 48.03 29.59 68.60 2.03 50.06 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 C 0.14 5.42 6.51 86.37 0.56 5.98 16 24 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 25 C -0.09 -2.52 2.27 -10.77 -0.02 -2.55 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 C -0.14 -3.06 9.02 71.98 0.65 -2.41 16 28 S 0.27 5.31 22.31 -56.49 -1.26 4.05 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.28 8.14 -2.38 -0.02 0.27 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.18 5.56 8.06 -2.91 -0.02 5.54 16 35 H 0.41 10.43 7.49 -92.71 -0.69 9.74 16 36 H 0.04 2.73 6.04 -2.39 -0.01 2.72 16 37 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 2.23 7.94 -2.39 -0.02 2.21 16 41 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.21 7.36 -2.38 -0.02 1.19 16 Total: -1.00 -79.71 382.32 0.80 -78.91 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.31 Total: 15.27 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 7.18 Total: 19.01 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.80 Total: -131.70 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.66 Total: -35.62 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.26 Total: 4.05 kcal Total: -79.71 0.80 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.205 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds