Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99635 * 2 1 4 4 C 1.50703 * 109.46493 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.71955 * 89.73098 * 4 3 2 6 6 C 1.33561 * 115.76395 * 179.78300 * 5 4 3 7 7 C 1.47263 * 123.13873 * 180.22909 * 6 5 4 8 8 O 1.21640 * 120.00124 * 180.28243 * 7 6 5 9 9 N 1.34776 * 120.00319 * 0.28447 * 7 6 5 10 10 C 1.46496 * 120.00127 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.49856 * 34.93728 * 10 9 7 12 12 C 1.53193 * 109.50073 * 274.83885 * 10 9 7 13 13 N 1.46929 * 108.77751 * 185.41370 * 12 10 9 14 14 C 1.36934 * 120.63090 * 233.58974 * 13 12 10 15 15 H 1.08001 * 119.99847 * 152.62758 * 14 13 12 16 16 C 1.38815 * 120.00236 * 332.62098 * 14 13 12 17 17 N 1.31615 * 120.00469 * 159.35475 * 16 14 13 18 18 Si 1.86799 * 119.99728 * 339.36057 * 16 14 13 19 19 H 1.48507 * 109.47280 * 92.91781 * 18 16 14 20 20 H 1.48495 * 109.47129 * 212.91697 * 18 16 14 21 21 H 1.48497 * 109.47371 * 332.91711 * 18 16 14 22 22 C 1.46930 * 118.73862 * 53.60945 * 13 12 10 23 23 C 1.53194 * 108.77435 * 306.39476 * 22 13 12 24 24 C 1.53030 * 109.31548 * 54.63120 * 23 22 13 25 25 H 1.09001 * 109.44922 * 58.64950 * 24 23 22 26 26 C 1.52999 * 109.45949 * 178.61439 * 24 23 22 27 27 C 1.35206 * 113.71629 * 0.49260 * 6 5 4 28 28 S 1.70768 * 124.72048 * 270.02320 * 4 3 2 29 29 H 1.09000 * 109.46912 * 59.99849 * 1 2 3 30 30 H 1.08990 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47078 * 300.00296 * 1 2 3 32 32 H 1.08999 * 109.47575 * 299.99362 * 3 2 1 33 33 H 1.08994 * 109.47310 * 60.00522 * 3 2 1 34 34 H 0.96994 * 120.00114 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.58732 * 305.20089 * 12 10 9 36 36 H 1.08999 * 109.58497 * 65.62591 * 12 10 9 37 37 H 0.96994 * 120.00151 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.58883 * 186.60402 * 22 13 12 39 39 H 1.08995 * 109.70009 * 66.24739 * 22 13 12 40 40 H 1.09006 * 109.49475 * 294.67913 * 23 22 13 41 41 H 1.09000 * 109.49336 * 174.58830 * 23 22 13 42 42 H 1.09005 * 109.47092 * 180.02562 * 26 24 23 43 43 H 1.08999 * 109.47378 * 300.06469 * 26 24 23 44 44 H 1.08994 * 109.47264 * 60.07438 * 26 24 23 45 45 H 1.08007 * 125.58140 * 179.72116 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2430 1.1234 -1.0565 6 6 5.5585 1.0248 -0.8480 7 6 6.5431 0.9471 -1.9404 8 8 7.7287 0.8531 -1.6851 9 7 6.1307 0.9801 -3.2231 10 6 7.1102 0.9034 -4.3097 11 1 7.9301 0.2484 -4.0149 12 6 7.6552 2.3039 -4.6067 13 7 8.5355 2.2297 -5.7808 14 6 9.8153 2.7135 -5.7249 15 1 10.5787 2.2963 -6.3649 16 6 10.1315 3.7402 -4.8458 17 7 11.3821 3.9362 -4.4853 18 14 8.7820 4.8435 -4.1743 19 1 8.2982 4.3016 -2.8790 20 1 9.3187 6.2127 -3.9684 21 1 7.6563 4.8934 -5.1414 22 6 8.0162 1.6270 -7.0161 23 6 7.4671 0.2340 -6.6921 24 6 6.4371 0.3454 -5.5658 25 1 5.6330 1.0136 -5.8742 26 6 5.8612 -1.0394 -5.2631 27 6 5.9014 0.9972 0.4595 28 16 4.4815 1.1093 1.4047 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8465 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 5.1853 1.0554 -3.4267 35 1 6.8271 2.9821 -4.8132 36 1 8.2209 2.6655 -3.7481 37 1 11.6029 4.6534 -3.8708 38 1 8.8202 1.5419 -7.7472 39 1 7.2183 2.2491 -7.4213 40 1 8.2841 -0.4144 -6.3751 41 1 6.9925 -0.1852 -7.5792 42 1 5.1271 -0.9602 -4.4612 43 1 5.3816 -1.4369 -6.1575 44 1 6.6649 -1.7076 -4.9542 45 1 6.9076 0.9171 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968695538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -38.230714 kcal Electronic energy + Delta-G solvation = -27752.396763 eV Core-core repulsion = 23896.582040 eV Total energy + Delta-G solvation = -3855.814723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80081 -40.49702 -39.25507 -38.62063 -36.27592 -34.78687 -33.36756 -32.75973 -30.98193 -29.25242 -29.21682 -27.08539 -26.31365 -25.65707 -24.10667 -22.83926 -22.32797 -21.41503 -20.80404 -19.80246 -18.89971 -17.96924 -17.60037 -17.27378 -17.17036 -16.73977 -16.50864 -16.38800 -15.99286 -15.59922 -15.36679 -15.19916 -14.87568 -14.85220 -14.66943 -14.35346 -13.90532 -13.70442 -13.55777 -13.37899 -13.17349 -13.08955 -12.93231 -12.61494 -12.39096 -12.34991 -12.27268 -11.80247 -11.71492 -11.63592 -11.33023 -11.20454 -11.04094 -10.85831 -10.83007 -10.69112 -10.32657 -10.00909 -8.97803 -8.24115 -5.54473 -0.67809 0.10907 0.44469 0.71084 1.22640 1.26140 1.36538 2.01930 2.13573 2.34546 2.58184 2.99300 3.16577 3.34830 3.62320 3.69946 3.90373 3.96088 4.00433 4.11212 4.17132 4.25507 4.32299 4.40874 4.50859 4.56688 4.62212 4.65018 4.68232 4.75826 4.82219 4.88767 4.93094 4.97132 5.06484 5.12653 5.14651 5.32426 5.36370 5.54205 5.81405 6.06857 6.08336 6.16037 6.50257 6.84634 7.05689 7.55941 7.96306 8.95793 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.003461 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.834144 B = 8087.619845 C = 9245.274348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.140 3.860 4 C -0.001 4.001 5 N -0.444 5.444 6 C -0.014 4.014 7 C 0.580 3.420 8 O -0.575 6.575 9 N -0.692 5.692 10 C 0.142 3.858 11 H 0.058 0.942 12 C 0.121 3.879 13 N -0.616 5.616 14 C -0.246 4.246 15 H 0.060 0.940 16 C -0.033 4.033 17 N -0.953 5.953 18 Si 0.942 3.058 19 H -0.299 1.299 20 H -0.304 1.304 21 H -0.254 1.254 22 C 0.137 3.863 23 C -0.117 4.117 24 C -0.084 4.084 25 H 0.089 0.911 26 C -0.135 4.135 27 C -0.240 4.240 28 S 0.334 5.666 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.390 -8.667 10.727 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.061 3.939 4 C -0.280 4.280 5 N -0.161 5.161 6 C -0.150 4.150 7 C 0.365 3.635 8 O -0.454 6.454 9 N -0.343 5.343 10 C 0.036 3.964 11 H 0.076 0.924 12 C -0.005 4.005 13 N -0.341 5.341 14 C -0.376 4.376 15 H 0.078 0.922 16 C -0.228 4.228 17 N -0.599 5.599 18 Si 0.772 3.228 19 H -0.228 1.228 20 H -0.232 1.232 21 H -0.178 1.178 22 C 0.013 3.987 23 C -0.156 4.156 24 C -0.103 4.103 25 H 0.108 0.892 26 C -0.193 4.193 27 C -0.383 4.383 28 S 0.592 5.408 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.840 -8.786 11.451 31.359 hybrid contribution 0.740 1.043 -0.345 1.324 sum -27.100 -7.743 11.106 30.294 Atomic orbital electron populations 1.22997 0.78130 1.04194 1.01644 1.87915 1.22318 1.26894 1.95809 1.20985 0.82174 0.86163 1.04592 1.27230 1.02295 1.05796 0.92655 1.66825 1.02332 1.13996 1.32997 1.20145 0.90270 1.11163 0.93384 1.17611 0.86718 0.76073 0.83104 1.90856 1.18266 1.51934 1.84388 1.45760 1.11531 1.72543 1.04421 1.21504 0.90878 0.96990 0.87033 0.92369 1.21609 0.93202 0.95882 0.89831 1.44438 1.11197 1.70371 1.08086 1.18904 0.85509 1.12094 1.21075 0.92246 1.25861 0.97385 0.99715 0.99808 1.69950 1.19302 1.33944 1.36708 0.85968 0.80789 0.78127 0.77921 1.22762 1.23197 1.17759 1.21272 0.97478 0.93031 0.86933 1.21991 0.97841 0.97250 0.98556 1.21301 0.98063 0.98378 0.92596 0.89244 1.21761 1.00375 0.94674 1.02462 1.27012 1.08458 1.05505 0.97345 1.82330 0.90726 1.60065 1.07692 0.92860 0.88586 0.91794 0.89318 0.87379 0.74504 0.94816 0.94652 0.93045 0.92015 0.93758 0.93260 0.87675 0.92543 0.89800 0.93900 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.23 10.69 -148.98 -1.59 -7.82 16 3 C 0.14 1.77 6.51 71.24 0.46 2.23 16 4 C 0.00 -0.02 6.97 88.58 0.62 0.60 16 5 N -0.44 -11.75 10.12 -180.83 -1.83 -13.58 16 6 C -0.01 -0.43 6.70 40.56 0.27 -0.16 16 7 C 0.58 22.79 7.76 86.62 0.67 23.47 16 8 O -0.57 -27.95 16.37 -4.16 -0.07 -28.02 16 9 N -0.69 -24.29 4.36 -445.57 -1.94 -26.23 16 10 C 0.14 5.57 2.07 45.07 0.09 5.66 16 11 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 12 C 0.12 5.78 3.78 86.36 0.33 6.11 16 13 N -0.62 -30.85 2.77 -699.08 -1.94 -32.79 16 14 C -0.25 -14.88 10.04 84.03 0.84 -14.04 16 15 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 16 C -0.03 -2.07 5.23 84.86 0.44 -1.62 16 17 N -0.95 -64.12 13.97 21.65 0.30 -63.82 16 18 Si 0.94 51.48 24.34 68.60 1.67 53.15 16 19 H -0.30 -16.78 6.62 99.48 0.66 -16.12 16 20 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 21 H -0.25 -12.89 6.64 99.48 0.66 -12.23 16 22 C 0.14 5.23 6.52 86.36 0.56 5.80 16 23 C -0.12 -3.54 5.36 30.67 0.16 -3.37 16 24 C -0.08 -2.45 2.27 -10.77 -0.02 -2.48 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 C -0.14 -3.19 9.02 71.98 0.65 -2.54 16 27 C -0.24 -6.16 10.62 67.12 0.71 -5.45 16 28 S 0.33 5.26 22.92 -56.49 -1.29 3.97 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.42 12.15 7.83 -92.71 -0.73 11.43 16 35 H 0.03 1.54 7.08 -2.39 -0.02 1.52 16 36 H 0.04 2.00 4.50 -2.39 -0.01 1.99 16 37 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 38 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 1.29 7.36 -2.38 -0.02 1.27 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.19 4.82 8.03 -2.91 -0.02 4.79 16 Total: -1.00 -85.19 375.98 0.54 -84.66 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.19 Total: 14.83 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 7.04 Total: 15.66 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -5.41 Total: -136.42 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.66 Total: -35.84 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.67 Total: 53.15 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.29 Total: 3.97 kcal Total: -85.19 0.54 -84.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968695538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.424 kcal (2) G-P(sol) polarization free energy of solvation -85.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds