Wall clock time and date at job start Wed Apr 1 2020 00:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99904 * 2 1 4 4 C 1.50699 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.29024 * 124.92120 * 90.33428 * 4 3 2 6 6 C 1.31779 * 117.12977 * 180.22785 * 5 4 3 7 7 C 1.50692 * 122.75314 * 179.74623 * 6 5 4 8 8 C 1.50704 * 109.47321 * 304.71088 * 7 6 5 9 9 O 1.21281 * 119.99520 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00110 * 180.02562 * 8 7 6 11 11 C 1.47418 * 125.64661 * 0.02562 * 10 8 7 12 12 C 1.54910 * 104.83362 * 204.09489 * 11 10 8 13 13 C 1.55160 * 101.58117 * 322.99252 * 12 11 10 14 14 H 1.09010 * 110.71973 * 276.96377 * 13 12 11 15 15 N 1.46499 * 110.72312 * 153.86275 * 13 12 11 16 16 C 1.36939 * 119.99933 * 86.72985 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31612 * 120.00054 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47517 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.46736 * 209.99481 * 20 18 16 23 23 H 1.48496 * 109.47375 * 329.99177 * 20 18 16 24 24 C 1.47023 * 125.64803 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.87850 * 59.55646 * 24 10 8 26 26 C 1.52998 * 109.88177 * 298.39237 * 24 10 8 27 27 C 1.33634 * 114.49615 * 359.47613 * 6 5 4 28 28 S 1.70983 * 124.91446 * 270.02412 * 4 3 2 29 29 H 1.08998 * 109.46858 * 60.00422 * 1 2 3 30 30 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47009 * 299.99827 * 1 2 3 32 32 H 1.09000 * 109.47270 * 59.99922 * 3 2 1 33 33 H 1.09002 * 109.47139 * 299.99777 * 3 2 1 34 34 H 1.08999 * 109.47412 * 184.70931 * 7 6 5 35 35 H 1.09004 * 109.47143 * 64.70757 * 7 6 5 36 36 H 1.09002 * 110.37229 * 85.25452 * 11 10 8 37 37 H 1.09003 * 110.37191 * 322.93365 * 11 10 8 38 38 H 1.09002 * 111.00961 * 204.92099 * 12 11 10 39 39 H 1.08993 * 111.03938 * 81.07536 * 12 11 10 40 40 H 0.97001 * 119.99790 * 266.44958 * 15 13 12 41 41 H 0.96998 * 120.00381 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46908 * 302.19519 * 26 24 10 43 43 H 1.09001 * 109.47094 * 62.19154 * 26 24 10 44 44 H 1.08992 * 109.47422 * 182.19301 * 26 24 10 45 45 H 1.08006 * 126.03655 * 180.26783 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2489 1.1346 -1.0589 6 6 5.5500 1.0258 -0.8808 7 6 6.5261 0.9492 -2.0263 8 6 6.1420 -0.1874 -2.9384 9 8 5.1715 -0.8684 -2.6830 10 7 6.8776 -0.4477 -4.0373 11 6 8.0769 0.2957 -4.4643 12 6 8.1687 0.0566 -5.9921 13 6 7.6978 -1.4175 -6.1055 14 1 8.5219 -2.1022 -5.9045 15 7 7.1211 -1.6773 -7.4269 16 6 7.9318 -2.0446 -8.4676 17 1 8.9968 -2.1385 -8.3152 18 6 7.3846 -2.2964 -9.7182 19 7 8.1638 -2.6490 -10.7185 20 14 5.5425 -2.1334 -9.9817 21 1 5.2226 -0.7438 -10.3962 22 1 5.1086 -3.0785 -11.0418 23 1 4.8316 -2.4486 -8.7166 24 6 6.6176 -1.5207 -5.0082 25 1 5.6287 -1.3908 -5.4481 26 6 6.7074 -2.8820 -4.3157 27 6 5.9335 0.9947 0.3990 28 16 4.4886 1.1084 1.4010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 7.5301 0.7796 -1.6375 35 1 6.5058 1.8854 -2.5842 36 1 8.9635 -0.0953 -3.9652 37 1 7.9596 1.3587 -4.2532 38 1 9.1944 0.1671 -6.3440 39 1 7.4980 0.7236 -6.5336 40 1 6.1644 -1.5930 -7.5636 41 1 7.7816 -2.8246 -11.5926 42 1 7.6923 -2.9947 -3.8623 43 1 5.9419 -2.9476 -3.5425 44 1 6.5522 -3.6735 -5.0487 45 1 6.9496 0.9140 0.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987331844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:14 Heat of formation + Delta-G solvation = -33.958358 kcal Electronic energy + Delta-G solvation = -26957.432478 eV Core-core repulsion = 23101.803019 eV Total energy + Delta-G solvation = -3855.629460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53782 -40.63985 -38.94122 -38.55417 -36.00506 -33.95165 -33.37319 -32.30014 -31.38347 -29.85667 -28.73743 -26.96613 -26.89807 -24.70909 -24.21255 -23.33695 -21.77505 -20.84631 -20.32112 -19.46232 -18.66932 -18.12502 -17.61104 -17.30893 -16.92533 -16.66454 -16.42913 -16.25991 -15.94900 -15.29700 -15.20707 -14.84861 -14.72291 -14.67456 -14.49334 -13.94810 -13.80127 -13.58965 -13.50107 -13.34090 -13.17367 -13.10908 -12.97809 -12.66691 -12.52873 -12.42005 -12.34816 -12.23101 -12.00762 -11.82151 -11.54442 -10.98827 -10.83404 -10.80923 -10.58873 -10.34516 -9.76266 -9.62776 -9.32723 -8.03437 -5.36829 -0.35643 0.40117 0.71428 1.36878 1.37667 1.44251 1.58329 1.70628 2.09806 2.45991 2.76249 3.25317 3.27162 3.50977 3.55404 3.74544 3.84382 4.01754 4.03922 4.12614 4.22964 4.27994 4.34169 4.37743 4.40776 4.45784 4.46355 4.50863 4.52312 4.65580 4.70893 4.77706 4.81407 4.92768 5.01964 5.09877 5.20423 5.24727 5.36019 5.45962 5.76783 6.05245 6.20623 6.61212 6.82283 7.04412 7.24381 7.80171 7.97708 9.17495 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.002543 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.314342 B =11010.138133 C =12212.521641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.138 3.862 4 C 0.011 3.989 5 N -0.470 5.470 6 C 0.055 3.945 7 C -0.053 4.053 8 C 0.524 3.476 9 O -0.572 6.572 10 N -0.613 5.613 11 C 0.105 3.895 12 C -0.149 4.149 13 C 0.173 3.827 14 H 0.072 0.928 15 N -0.747 5.747 16 C -0.222 4.222 17 H 0.069 0.931 18 C -0.057 4.057 19 N -0.979 5.979 20 Si 0.943 3.057 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.263 1.263 24 C 0.133 3.867 25 H 0.044 0.956 26 C -0.145 4.145 27 C -0.242 4.242 28 S 0.180 5.820 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.361 0.639 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 13.523 30.424 33.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.059 3.941 4 C -0.266 4.266 5 N -0.187 5.187 6 C -0.077 4.077 7 C -0.095 4.095 8 C 0.313 3.687 9 O -0.451 6.451 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.189 4.189 13 C 0.064 3.936 14 H 0.090 0.910 15 N -0.389 5.389 16 C -0.353 4.353 17 H 0.087 0.913 18 C -0.249 4.249 19 N -0.629 5.629 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.188 1.188 24 C 0.028 3.972 25 H 0.062 0.938 26 C -0.203 4.203 27 C -0.381 4.381 28 S 0.435 5.565 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.194 0.806 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.390 12.999 31.107 34.515 hybrid contribution -0.862 -0.285 -1.936 2.139 sum -8.253 12.714 29.171 32.874 Atomic orbital electron populations 1.22979 0.78370 1.04038 1.01531 1.87946 1.22271 1.27539 1.95730 1.20932 0.83990 0.85687 1.03492 1.26859 1.01363 1.06315 0.92112 1.65937 1.05825 1.13796 1.33106 1.19873 0.89672 1.03565 0.94618 1.20319 0.99010 0.97978 0.92189 1.20727 0.81679 0.85725 0.80539 1.90725 1.28748 1.52029 1.73550 1.48613 1.29692 1.32652 1.23754 1.22582 0.87161 0.97998 0.93955 1.23357 1.02668 0.97586 0.95329 1.21424 0.93627 0.95944 0.82614 0.91041 1.42748 1.05733 1.83630 1.06791 1.18995 0.91578 1.36379 0.88310 0.91305 1.25337 1.01314 1.02358 0.95868 1.69839 1.35805 1.55411 1.01880 0.85584 0.82083 0.77562 0.77584 1.20543 1.22239 1.18807 1.21556 0.98140 0.88064 0.89457 0.93771 1.21939 1.02220 0.95809 1.00349 1.27325 1.05276 1.10480 0.94990 1.83560 0.96679 1.65652 1.10571 0.93291 0.88875 0.91359 0.87832 0.90642 0.83223 0.85501 0.88459 0.87576 0.89448 0.92055 0.80557 0.93351 0.91104 0.93276 0.92354 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.74 10.69 -148.98 -1.59 -11.33 16 3 C 0.14 2.64 6.51 71.24 0.46 3.10 16 4 C 0.01 0.26 7.02 88.52 0.62 0.88 16 5 N -0.47 -13.37 9.70 -179.41 -1.74 -15.11 16 6 C 0.06 1.25 5.63 41.52 0.23 1.49 16 7 C -0.05 -0.98 5.20 29.10 0.15 -0.83 16 8 C 0.52 15.22 7.61 87.66 0.67 15.89 16 9 O -0.57 -22.53 14.50 -3.03 -0.04 -22.57 16 10 N -0.61 -16.91 3.06 -788.05 -2.42 -19.32 16 11 C 0.10 2.10 6.69 86.86 0.58 2.68 16 12 C -0.15 -4.29 6.77 31.99 0.22 -4.07 16 13 C 0.17 6.25 3.11 46.18 0.14 6.39 16 14 H 0.07 2.61 7.83 -2.38 -0.02 2.59 16 15 N -0.75 -34.43 5.05 -317.31 -1.60 -36.04 16 16 C -0.22 -12.25 10.46 84.03 0.88 -11.37 16 17 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 18 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 19 N -0.98 -61.99 13.97 21.65 0.30 -61.69 16 20 Si 0.94 46.41 27.74 68.60 1.90 48.31 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.26 -12.18 6.52 99.48 0.65 -11.53 16 24 C 0.13 4.53 3.21 45.34 0.15 4.68 16 25 H 0.04 1.76 7.69 -2.39 -0.02 1.74 16 26 C -0.14 -4.79 9.10 71.98 0.65 -4.14 16 27 C -0.24 -3.88 11.07 66.77 0.74 -3.14 16 28 S 0.18 2.91 23.18 -56.49 -1.31 1.60 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.15 1.46 8.03 -2.39 -0.02 1.44 16 35 H 0.13 1.88 7.85 -2.39 -0.02 1.86 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.46 7.48 -2.39 -0.02 1.44 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.36 16.83 5.37 -92.71 -0.50 16.33 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.05 1.75 6.90 -2.39 -0.02 1.73 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.22 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -82.76 384.50 1.16 -81.61 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.44 Total: 24.22 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.21 Total: 10.33 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -5.46 Total: -132.16 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.64 Total: -33.91 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.31 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.31 Total: 1.60 kcal Total: -82.76 1.16 -81.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.647 kcal (2) G-P(sol) polarization free energy of solvation -82.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds