Wall clock time and date at job start Wed Apr 1 2020 00:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99613 * 2 1 4 4 C 1.50713 * 109.47110 * 179.97438 * 3 2 1 5 5 N 1.29022 * 124.91182 * 89.99941 * 4 3 2 6 6 C 1.31782 * 117.12213 * 180.02562 * 5 4 3 7 7 C 1.50699 * 122.75267 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46973 * 305.02424 * 7 6 5 9 9 O 1.21275 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99836 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.64845 * 0.04868 * 10 8 7 12 12 C 1.54906 * 104.83216 * 204.08908 * 11 10 8 13 13 H 1.08999 * 111.00570 * 204.87954 * 12 11 10 14 14 N 1.46503 * 111.00660 * 81.06143 * 12 11 10 15 15 C 1.36937 * 119.99923 * 86.45255 * 14 12 11 16 16 H 1.08003 * 119.99913 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99980 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00426 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47353 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47008 * 120.00397 * 19 17 15 22 22 H 1.48500 * 109.47199 * 240.00194 * 19 17 15 23 23 C 1.55155 * 101.58328 * 322.99015 * 12 11 10 24 24 C 1.47019 * 125.64589 * 179.97438 * 10 8 7 25 25 H 1.09008 * 109.87958 * 59.41260 * 24 10 8 26 26 C 1.52997 * 109.88752 * 298.39914 * 24 10 8 27 27 C 1.33648 * 114.49790 * 0.23211 * 6 5 4 28 28 S 1.70972 * 124.91430 * 269.99813 * 4 3 2 29 29 H 1.08996 * 109.47248 * 60.00647 * 1 2 3 30 30 H 1.09008 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47358 * 299.99822 * 1 2 3 32 32 H 1.08999 * 109.47769 * 60.00305 * 3 2 1 33 33 H 1.08996 * 109.47550 * 299.99509 * 3 2 1 34 34 H 1.09001 * 109.47184 * 185.02607 * 7 6 5 35 35 H 1.09000 * 109.46668 * 65.02496 * 7 6 5 36 36 H 1.09001 * 110.36828 * 322.92610 * 11 10 8 37 37 H 1.08995 * 110.37150 * 85.13974 * 11 10 8 38 38 H 0.96998 * 120.00290 * 266.45376 * 14 12 11 39 39 H 0.96993 * 120.00326 * 179.97438 * 18 17 15 40 40 H 1.09007 * 110.71881 * 277.14057 * 23 12 11 41 41 H 1.09000 * 110.72534 * 153.86738 * 23 12 11 42 42 H 1.09002 * 109.47153 * 61.45267 * 26 24 10 43 43 H 1.09001 * 109.46832 * 301.45458 * 26 24 10 44 44 H 1.09004 * 109.47261 * 181.45439 * 26 24 10 45 45 H 1.07998 * 126.03145 * 179.77044 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2491 1.1281 -1.0571 6 6 5.5506 1.0246 -0.8779 7 6 6.5275 0.9465 -2.0227 8 6 6.1433 -0.1905 -2.9342 9 8 5.1716 -0.8700 -2.6795 10 7 6.8790 -0.4514 -4.0329 11 6 8.0787 0.2913 -4.4600 12 6 8.1706 0.0515 -5.9876 13 1 9.1963 0.1622 -6.3394 14 7 7.2692 0.9483 -6.7152 15 6 7.6888 2.2036 -7.0664 16 1 8.6844 2.5323 -6.8074 17 6 6.8345 3.0535 -7.7554 18 7 5.6210 2.6532 -8.0706 19 14 7.4072 4.7657 -8.2351 20 1 8.8019 4.9701 -7.7680 21 1 7.3543 4.9096 -9.7122 22 1 6.5210 5.7782 -7.6070 23 6 7.6991 -1.4224 -6.1005 24 6 6.6188 -1.5249 -5.0032 25 1 5.6290 -1.3965 -5.4414 26 6 6.7082 -2.8859 -4.3101 27 6 5.9327 0.9892 0.4023 28 16 4.4875 1.1097 1.4030 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 7.5311 0.7764 -1.6329 35 1 6.5083 1.8824 -2.5812 36 1 7.9617 1.3543 -4.2492 37 1 8.9647 -0.0987 -3.9591 38 1 6.3751 0.6530 -6.9482 39 1 5.0240 3.2472 -8.5517 40 1 8.5221 -2.1073 -5.8960 41 1 7.2702 -1.6159 -7.0837 42 1 5.9511 -2.9459 -3.5282 43 1 7.6974 -3.0040 -3.8678 44 1 6.5398 -3.6774 -5.0404 45 1 6.9481 0.9040 0.7601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989658392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:43 Heat of formation + Delta-G solvation = -38.389373 kcal Electronic energy + Delta-G solvation = -27369.179198 eV Core-core repulsion = 23513.357596 eV Total energy + Delta-G solvation = -3855.821603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50069 -40.60662 -38.91578 -38.48855 -35.75856 -33.92034 -33.13294 -32.61256 -30.18979 -29.91700 -28.77971 -26.97082 -26.70041 -25.71182 -24.30228 -23.03476 -21.46280 -20.77469 -20.03912 -19.24164 -18.63467 -18.10467 -17.62082 -17.25056 -16.96149 -16.68416 -16.35225 -16.21858 -15.56131 -15.41171 -15.29151 -14.90732 -14.83288 -14.48772 -14.41801 -13.94218 -13.66952 -13.41399 -13.30713 -13.20160 -13.17009 -13.00442 -12.88534 -12.71069 -12.43561 -12.37563 -12.24517 -12.14206 -11.99083 -11.62424 -11.47459 -11.03929 -10.83005 -10.77683 -10.57780 -10.36832 -9.76774 -9.57736 -8.95049 -7.91924 -5.20959 -0.37331 0.38428 0.67593 1.48836 1.49114 1.59062 1.60528 1.73126 2.24366 2.57642 2.74488 3.25581 3.39951 3.56831 3.75914 3.88912 3.95207 4.00247 4.03743 4.14354 4.19646 4.25823 4.36748 4.39295 4.44966 4.46278 4.51362 4.51926 4.68220 4.71026 4.80422 4.80470 4.83389 4.96386 5.05879 5.12783 5.19418 5.26627 5.37114 5.56770 5.58712 6.03962 6.28878 6.68383 6.83765 7.29544 7.35054 8.10856 8.32671 9.32024 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003165 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.817794 B = 8844.067355 C = 9748.411046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.139 3.861 4 C 0.010 3.990 5 N -0.476 5.476 6 C 0.057 3.943 7 C -0.057 4.057 8 C 0.523 3.477 9 O -0.575 6.575 10 N -0.604 5.604 11 C 0.077 3.923 12 C 0.155 3.845 13 H 0.089 0.911 14 N -0.729 5.729 15 C -0.230 4.230 16 H 0.089 0.911 17 C -0.080 4.080 18 N -0.974 5.974 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.298 1.298 22 H -0.302 1.302 23 C -0.121 4.121 24 C 0.135 3.865 25 H 0.029 0.971 26 C -0.144 4.144 27 C -0.241 4.241 28 S 0.193 5.807 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.368 0.632 39 H 0.247 0.753 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -5.665 21.344 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.060 3.940 4 C -0.267 4.267 5 N -0.193 5.193 6 C -0.075 4.075 7 C -0.099 4.099 8 C 0.312 3.688 9 O -0.454 6.454 10 N -0.337 5.337 11 C -0.048 4.048 12 C 0.046 3.954 13 H 0.107 0.893 14 N -0.367 5.367 15 C -0.362 4.362 16 H 0.107 0.893 17 C -0.271 4.271 18 N -0.625 5.625 19 Si 0.799 3.201 20 H -0.180 1.180 21 H -0.226 1.226 22 H -0.230 1.230 23 C -0.159 4.159 24 C 0.031 3.969 25 H 0.047 0.953 26 C -0.202 4.202 27 C -0.380 4.380 28 S 0.448 5.552 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.199 0.801 39 H 0.055 0.945 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.121 -5.980 22.100 22.922 hybrid contribution -0.477 1.122 -1.739 2.124 sum 0.644 -4.858 20.361 20.942 Atomic orbital electron populations 1.22996 0.78329 1.04166 1.01478 1.87936 1.22328 1.27296 1.95718 1.20926 0.83948 0.85797 1.03374 1.26899 1.01454 1.06244 0.92138 1.65932 1.05981 1.13800 1.33560 1.19792 0.89567 1.03600 0.94552 1.20250 0.99111 0.97866 0.92631 1.20468 0.81842 0.85323 0.81141 1.90672 1.28333 1.52160 1.74277 1.48514 1.29187 1.32673 1.23303 1.23321 0.86889 0.96411 0.98157 1.21682 0.95016 0.89101 0.89639 0.89343 1.42595 1.14674 1.13381 1.66066 1.19726 0.98253 0.90890 1.27352 0.89338 1.25569 0.96424 1.02460 1.02695 1.69855 1.08259 1.37393 1.46985 0.85126 0.78022 0.80074 0.76877 1.18038 1.22582 1.23029 1.22960 0.98378 0.97231 0.97332 1.21466 0.97990 0.87921 0.89485 0.95303 1.21994 1.02206 0.95365 1.00679 1.27314 1.05500 1.10442 0.94793 1.83335 0.96174 1.65657 1.10027 0.93595 0.88527 0.91229 0.87503 0.91205 0.83539 0.87967 0.91650 0.88119 0.80133 0.94452 0.86629 0.90965 0.94465 0.90729 0.90289 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.41 -11.39 10.69 -148.98 -1.59 -12.98 16 3 C 0.14 3.41 6.51 71.24 0.46 3.87 16 4 C 0.01 0.30 7.02 88.53 0.62 0.92 16 5 N -0.48 -17.44 9.68 -179.39 -1.74 -19.18 16 6 C 0.06 1.77 5.64 41.52 0.23 2.01 16 7 C -0.06 -1.67 5.20 29.10 0.15 -1.52 16 8 C 0.52 19.74 7.61 87.66 0.67 20.41 16 9 O -0.57 -26.43 14.48 -3.01 -0.04 -26.47 16 10 N -0.60 -20.87 3.06 -788.08 -2.42 -23.29 16 11 C 0.08 2.33 6.38 86.86 0.55 2.88 16 12 C 0.16 5.35 3.69 46.38 0.17 5.52 16 13 H 0.09 2.76 8.13 -2.39 -0.02 2.75 16 14 N -0.73 -34.94 5.27 -316.38 -1.67 -36.60 16 15 C -0.23 -12.07 9.98 84.03 0.84 -11.23 16 16 H 0.09 4.28 7.83 -2.91 -0.02 4.25 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 18 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 19 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 23 C -0.12 -3.53 6.05 31.78 0.19 -3.34 16 24 C 0.13 4.57 3.45 45.34 0.16 4.73 16 25 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 26 C -0.14 -4.10 9.10 71.98 0.66 -3.44 16 27 C -0.24 -5.34 11.07 66.78 0.74 -4.60 16 28 S 0.19 4.01 23.18 -56.49 -1.31 2.70 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.15 2.89 8.03 -2.39 -0.02 2.87 16 35 H 0.10 3.20 7.85 -2.39 -0.02 3.18 16 36 H 0.07 2.18 7.48 -2.39 -0.02 2.16 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.37 20.14 7.82 -92.71 -0.72 19.42 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.12 2.47 7.85 -2.38 -0.02 2.45 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.27 6.88 -2.39 -0.02 1.25 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -82.00 388.15 0.98 -81.02 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.27 Total: 33.74 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 7.16 Total: 13.87 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.54 Total: -139.42 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.64 Total: -39.46 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.31 Total: 2.70 kcal Total: -82.00 0.98 -81.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989658392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.632 kcal (2) G-P(sol) polarization free energy of solvation -82.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds