Wall clock time and date at job start Wed Apr 1 2020 00:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99832 * 2 1 4 4 C 1.50704 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.30938 * 122.90460 * 270.04454 * 4 3 2 6 6 C 1.29425 * 117.36655 * 179.97438 * 5 4 3 7 7 S 1.70959 * 110.38756 * 359.72423 * 6 5 4 8 8 C 1.35656 * 122.90154 * 90.00217 * 4 3 2 9 9 C 1.46689 * 126.13313 * 0.03829 * 8 4 3 10 10 O 1.21684 * 119.99652 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99786 * 180.02562 * 9 8 4 12 12 C 1.46500 * 119.99545 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.52876 * 35.07963 * 12 11 9 14 14 C 1.53041 * 109.49371 * 274.99491 * 12 11 9 15 15 C 1.53039 * 109.54065 * 301.41550 * 14 12 11 16 16 C 1.53191 * 109.31163 * 298.63229 * 15 14 12 17 17 N 1.46932 * 108.77428 * 54.64019 * 16 15 14 18 18 C 1.36935 * 120.63266 * 126.36195 * 17 16 15 19 19 H 1.07998 * 119.99767 * 209.79772 * 18 17 16 20 20 C 1.38813 * 119.99672 * 30.07949 * 18 17 16 21 21 N 1.31620 * 120.00355 * 11.68148 * 20 18 17 22 22 Si 1.86803 * 119.99521 * 191.68212 * 20 18 17 23 23 H 1.48495 * 109.47535 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46903 * 119.99986 * 22 20 18 25 25 H 1.48498 * 109.46988 * 239.99599 * 22 20 18 26 26 C 1.46928 * 118.73319 * 306.63663 * 17 16 15 27 27 H 1.08990 * 109.58812 * 293.57343 * 26 17 16 28 28 C 1.53007 * 109.58438 * 173.14604 * 26 17 16 29 29 H 1.08997 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46925 * 300.00054 * 1 2 3 31 31 H 1.09006 * 109.47144 * 59.99379 * 1 2 3 32 32 H 1.09000 * 109.47060 * 60.00490 * 3 2 1 33 33 H 1.08998 * 109.47539 * 300.00340 * 3 2 1 34 34 H 1.08001 * 124.81120 * 179.97438 * 6 5 4 35 35 H 0.97002 * 119.99953 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.45809 * 181.39418 * 14 12 11 37 37 H 1.09000 * 109.46157 * 61.44333 * 14 12 11 38 38 H 1.09006 * 109.49808 * 178.68494 * 15 14 12 39 39 H 1.08995 * 109.52479 * 58.60297 * 15 14 12 40 40 H 1.08993 * 109.59114 * 294.84836 * 16 15 14 41 41 H 1.09006 * 109.58320 * 174.41704 * 16 15 14 42 42 H 0.96999 * 120.00015 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.46838 * 59.99578 * 28 26 17 44 44 H 1.08997 * 109.46946 * 180.02562 * 28 26 17 45 45 H 1.09008 * 109.46501 * 300.00270 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2211 1.1298 1.1003 6 6 5.5054 1.0277 0.9759 7 16 5.9422 0.9858 -0.6764 8 6 4.2476 1.1282 -1.1380 9 6 3.7250 1.1702 -2.5080 10 8 2.5272 1.2663 -2.6995 11 7 4.5716 1.1025 -3.5545 12 6 4.0497 1.1450 -4.9227 13 1 3.1846 1.8070 -4.9623 14 6 3.6355 -0.2633 -5.3553 15 6 4.8419 -1.2010 -5.2688 16 6 5.9373 -0.7061 -6.2185 17 7 6.2393 0.6966 -5.9020 18 6 7.5244 1.0922 -5.6427 19 1 7.7099 1.9217 -4.9765 20 6 8.5882 0.4309 -6.2409 21 7 8.3678 -0.4157 -7.2243 22 14 10.3327 0.7424 -5.6499 23 1 10.3110 1.7304 -4.5415 24 1 10.9266 -0.5304 -5.1676 25 1 11.1475 1.2751 -6.7713 26 6 5.1354 1.6654 -5.8630 27 1 4.7207 1.7872 -6.8635 28 6 5.6523 3.0115 -5.3513 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 6.2021 0.9723 1.7993 35 1 5.5265 1.0263 -3.4018 36 1 3.2703 -0.2352 -6.3820 37 1 2.8449 -0.6271 -4.6990 38 1 4.5406 -2.2088 -5.5547 39 1 5.2229 -1.2110 -4.2477 40 1 5.5893 -0.7815 -7.2486 41 1 6.8345 -1.3113 -6.0884 42 1 9.1112 -0.8781 -7.6420 43 1 6.4328 3.3781 -6.0179 44 1 4.8319 3.7286 -5.3227 45 1 6.0603 2.8864 -4.3482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993961806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:08 Heat of formation + Delta-G solvation = -7.878127 kcal Electronic energy + Delta-G solvation = -28610.026911 eV Core-core repulsion = 24755.528375 eV Total energy + Delta-G solvation = -3854.498536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47057 -39.40716 -37.59908 -37.43747 -34.03463 -32.51995 -31.86915 -31.33749 -29.61454 -28.01965 -26.42887 -26.02546 -25.06438 -24.60766 -22.65245 -21.41118 -20.79160 -19.42935 -18.93765 -18.49730 -16.87944 -16.55281 -16.46737 -15.79397 -15.47912 -15.19404 -15.05267 -14.93923 -14.52991 -14.19967 -13.94705 -13.74700 -13.42246 -13.10043 -13.07407 -12.94842 -12.61623 -12.35235 -11.89917 -11.57933 -11.33815 -11.31662 -11.28782 -11.01314 -10.75458 -10.67964 -10.55931 -10.16474 -10.10260 -10.03672 -9.82992 -9.70733 -9.61494 -9.43059 -9.36425 -9.10818 -8.62561 -8.52246 -6.72035 -5.85299 -3.33179 0.15655 1.10548 1.49016 2.30340 3.22985 3.30253 3.37876 3.39742 3.41985 3.81192 4.26691 4.39908 4.85295 4.89311 5.07843 5.24356 5.26008 5.29706 5.35382 5.45200 5.51848 5.56220 5.60683 5.63231 5.70583 5.89819 5.94013 6.06008 6.16539 6.27318 6.35936 6.49456 6.60590 6.64452 6.74047 6.88819 6.89921 7.00607 7.10494 7.36522 7.45949 7.65546 7.72874 7.82840 8.37419 8.40502 9.13709 9.75676 10.32685 11.22122 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004062 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.216722 B = 6891.784708 C = 8065.056489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.132 3.868 4 C 0.128 3.872 5 N -0.465 5.465 6 C 0.020 3.980 7 S 0.194 5.806 8 C -0.263 4.263 9 C 0.589 3.411 10 O -0.531 6.531 11 N -0.692 5.692 12 C 0.135 3.865 13 H 0.080 0.920 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.170 3.830 17 N -0.587 5.587 18 C -0.256 4.256 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.158 3.842 27 H 0.042 0.958 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.206 0.794 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.018 0.982 41 H 0.091 0.909 42 H 0.253 0.747 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 3.029 12.711 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.298 6.298 3 C 0.053 3.947 4 C -0.010 4.010 5 N -0.179 5.179 6 C -0.276 4.276 7 S 0.450 5.550 8 C -0.388 4.388 9 C 0.373 3.627 10 O -0.411 6.411 11 N -0.342 5.342 12 C 0.029 3.971 13 H 0.098 0.902 14 C -0.160 4.160 15 C -0.181 4.181 16 C 0.045 3.955 17 N -0.311 5.311 18 C -0.386 4.386 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.051 3.949 27 H 0.060 0.940 28 C -0.194 4.194 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.223 0.777 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.415 2.775 12.465 15.293 hybrid contribution 0.511 0.206 0.430 0.699 sum -7.904 2.980 12.895 15.416 Atomic orbital electron populations 1.22703 0.80681 1.02650 0.99996 1.87898 1.19791 1.26614 1.95479 1.20992 0.85271 0.86078 1.02367 1.20175 0.97053 0.98476 0.85334 1.66018 1.05034 1.15641 1.31202 1.28678 0.95210 1.02718 1.00965 1.84424 1.04970 1.63247 1.02376 1.25815 0.96817 1.16545 0.99635 1.16677 0.86311 0.77317 0.82363 1.90739 1.14436 1.51077 1.84847 1.45958 1.10497 1.72045 1.05739 1.21565 0.97677 0.97278 0.80608 0.90228 1.21778 0.98081 0.95448 1.00688 1.22160 0.97171 0.97307 1.01430 1.20858 0.95999 0.85366 0.93299 1.44163 1.02306 1.02563 1.82046 1.19196 0.81828 1.16309 1.21243 0.91177 1.25126 0.98066 1.00016 0.95986 1.69993 1.30265 1.30546 1.23615 0.86276 0.85047 0.77624 0.78136 1.20174 1.21576 1.21727 1.20652 0.89112 0.90121 0.95031 0.94034 1.21800 1.00295 0.95856 1.01465 0.89722 0.94310 0.93583 0.92150 0.88869 0.77746 0.75619 0.91714 0.92952 0.93342 0.93039 0.96363 0.89108 0.93639 0.91586 0.94098 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.74 10.69 -35.23 -0.38 -6.11 16 3 C 0.13 1.87 5.75 36.01 0.21 2.08 16 4 C 0.13 1.93 6.42 -83.89 -0.54 1.39 16 5 N -0.47 -6.43 10.50 -11.53 -0.12 -6.55 16 6 C 0.02 0.21 12.22 51.75 0.63 0.85 16 7 S 0.19 2.36 22.35 -107.50 -2.40 -0.04 16 8 C -0.26 -4.00 6.48 -37.10 -0.24 -4.24 16 9 C 0.59 9.99 7.74 -12.85 -0.10 9.89 16 10 O -0.53 -9.88 13.93 5.20 0.07 -9.81 16 11 N -0.69 -11.69 3.44 -55.21 -0.19 -11.88 16 12 C 0.13 2.34 2.32 -68.03 -0.16 2.19 16 13 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 14 C -0.12 -2.13 5.58 -26.69 -0.15 -2.27 16 15 C -0.14 -2.67 5.93 -26.61 -0.16 -2.83 16 16 C 0.17 3.81 5.27 -3.71 -0.02 3.79 16 17 N -0.59 -13.14 2.66 -165.02 -0.44 -13.57 16 18 C -0.26 -6.24 8.59 -15.06 -0.13 -6.37 16 19 H 0.07 1.65 6.21 -52.49 -0.33 1.33 16 20 C 0.01 0.18 5.04 -17.43 -0.09 0.10 16 21 N -0.90 -24.56 11.01 55.49 0.61 -23.95 16 22 Si 0.90 20.28 29.57 -169.99 -5.03 15.25 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.16 3.02 3.18 -67.82 -0.22 2.81 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.14 -2.39 7.72 37.16 0.29 -2.10 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.38 6.01 -51.93 -0.31 1.07 16 34 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.41 7.05 6.92 -40.82 -0.28 6.77 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 42 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.90 6.36 -51.92 -0.33 0.57 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -29.68 370.77 -8.37 -38.05 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.53 Total: 6.24 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 0.44 Total: 6.78 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.14 Total: -55.95 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.30 Total: -15.92 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.40 Total: -0.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.68 -8.37 -38.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993961806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.174 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds