Wall clock time and date at job start Wed Apr 1 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00256 * 2 1 4 4 C 1.50699 * 109.47545 * 179.97438 * 3 2 1 5 5 N 1.28645 * 124.72389 * 90.24772 * 4 3 2 6 6 C 1.33556 * 115.76455 * 180.22909 * 5 4 3 7 7 C 1.47276 * 123.13969 * 179.82827 * 6 5 4 8 8 O 1.21629 * 119.99748 * 179.70344 * 7 6 5 9 9 N 1.34769 * 119.99858 * 359.70492 * 7 6 5 10 10 C 1.46502 * 120.00228 * 180.27873 * 9 7 6 11 11 H 1.09001 * 109.49349 * 324.72167 * 10 9 7 12 12 C 1.53035 * 109.50124 * 84.78225 * 10 9 7 13 13 C 1.53041 * 109.54274 * 181.28591 * 12 10 9 14 14 C 1.53192 * 109.33627 * 298.68944 * 13 12 10 15 15 N 1.46921 * 108.77976 * 54.61776 * 14 13 12 16 16 C 1.36939 * 120.63347 * 126.41160 * 15 14 13 17 17 H 1.08003 * 120.00123 * 221.17998 * 16 15 14 18 18 C 1.38813 * 119.99900 * 41.17511 * 16 15 14 19 19 N 1.31616 * 120.00012 * 214.89245 * 18 16 15 20 20 Si 1.86795 * 120.00019 * 34.89362 * 18 16 15 21 21 H 1.48497 * 109.47214 * 84.62129 * 20 18 16 22 22 H 1.48498 * 109.47304 * 204.62498 * 20 18 16 23 23 H 1.48496 * 109.47271 * 324.62510 * 20 18 16 24 24 C 1.46934 * 118.73672 * 306.38718 * 15 14 13 25 25 H 1.08995 * 109.58691 * 293.82004 * 24 15 14 26 26 C 1.53004 * 109.70026 * 173.46338 * 24 15 14 27 27 C 1.35208 * 113.72217 * 359.55815 * 6 5 4 28 28 S 1.70775 * 124.71631 * 270.02313 * 4 3 2 29 29 H 1.09001 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47454 * 300.00354 * 1 2 3 31 31 H 1.08995 * 109.46946 * 60.00692 * 1 2 3 32 32 H 1.08999 * 109.47467 * 59.99433 * 3 2 1 33 33 H 1.09005 * 109.46726 * 299.99772 * 3 2 1 34 34 H 0.97002 * 120.00114 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46396 * 301.34545 * 12 10 9 36 36 H 1.09007 * 109.45734 * 61.30290 * 12 10 9 37 37 H 1.08996 * 109.49745 * 178.71859 * 13 12 10 38 38 H 1.09004 * 109.49362 * 58.65124 * 13 12 10 39 39 H 1.08999 * 109.58606 * 294.82209 * 14 13 12 40 40 H 1.09006 * 109.70192 * 174.47441 * 14 13 12 41 41 H 0.96991 * 120.00491 * 180.02562 * 19 18 16 42 42 H 1.08992 * 109.47291 * 300.63929 * 26 24 15 43 43 H 1.09002 * 109.46693 * 60.64384 * 26 24 15 44 44 H 1.09005 * 109.46423 * 180.63971 * 26 24 15 45 45 H 1.07992 * 125.59122 * 180.23618 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2439 1.1330 -1.0564 6 6 5.5585 1.0232 -0.8479 7 6 6.5432 0.9453 -1.9402 8 8 7.7286 0.8516 -1.6848 9 7 6.1307 0.9780 -3.2228 10 6 7.1097 0.8944 -4.3095 11 1 8.0224 1.4139 -4.0176 12 6 7.4282 -0.5743 -4.5984 13 6 8.4747 -0.6619 -5.7116 14 6 7.9119 -0.0283 -6.9878 15 7 7.4695 1.3389 -6.6817 16 6 7.9224 2.4003 -7.4190 17 1 8.1909 3.3238 -6.9276 18 6 8.0364 2.2893 -8.7980 19 7 9.0153 2.9025 -9.4289 20 14 6.8006 1.2695 -9.7582 21 1 5.6038 2.0958 -10.0584 22 1 7.4175 0.8117 -11.0290 23 1 6.3978 0.0903 -8.9505 24 6 6.5315 1.5456 -5.5698 25 1 5.5724 1.0872 -5.8109 26 6 6.3379 3.0443 -5.3301 27 6 5.9014 0.9960 0.4597 28 16 4.4815 1.1094 1.4048 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 5.1853 1.0524 -3.4265 35 1 7.8170 -1.0459 -3.6959 36 1 6.5197 -1.0876 -4.9136 37 1 8.7177 -1.7074 -5.9011 38 1 9.3752 -0.1284 -5.4072 39 1 7.0654 -0.6151 -7.3445 40 1 8.6853 0.0012 -7.7554 41 1 9.0948 2.8253 -10.3924 42 1 7.2988 3.5016 -5.0943 43 1 5.9265 3.5056 -6.2280 44 1 5.6504 3.1932 -4.4974 45 1 6.9074 0.9159 0.8441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994517691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:41 Heat of formation + Delta-G solvation = -11.586415 kcal Electronic energy + Delta-G solvation = -27419.772693 eV Core-core repulsion = 23565.113353 eV Total energy + Delta-G solvation = -3854.659339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67119 -39.20133 -38.20492 -37.52964 -34.35024 -32.70434 -31.95253 -31.65230 -29.90732 -28.54024 -26.72244 -26.33551 -25.18099 -24.63091 -22.39371 -21.22771 -20.75121 -20.03411 -19.62220 -18.70898 -17.05613 -16.76092 -16.47130 -16.24228 -16.06780 -15.57749 -15.29322 -14.86791 -14.38020 -14.32198 -14.07877 -13.83201 -13.57312 -13.35323 -13.12944 -12.98718 -12.67964 -12.49073 -12.24421 -11.92841 -11.89699 -11.81689 -11.36710 -11.12024 -10.73237 -10.55075 -10.37365 -10.33585 -10.30087 -10.18957 -10.10886 -9.97778 -9.89763 -9.66988 -9.47603 -9.27757 -8.69711 -8.33476 -6.72180 -6.07250 -3.38299 0.18877 0.88079 1.28747 1.73287 3.12574 3.35780 3.41690 3.45687 3.52193 3.57422 3.89236 4.41681 4.58842 4.71190 4.83453 4.88380 4.92243 4.96296 4.99338 5.05971 5.24626 5.28740 5.40399 5.47977 5.61286 5.67444 5.83944 5.99005 6.13255 6.28985 6.38121 6.40427 6.50481 6.54025 6.57216 6.62108 6.69823 6.91249 6.93233 7.05549 7.09967 7.16663 7.75318 8.03906 8.33493 8.44224 9.00439 9.72415 10.20563 11.08062 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002749 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.139809 B =10184.073697 C =10974.161754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.015 3.985 5 N -0.422 5.422 6 C 0.015 3.985 7 C 0.591 3.409 8 O -0.536 6.536 9 N -0.698 5.698 10 C 0.130 3.870 11 H 0.091 0.909 12 C -0.118 4.118 13 C -0.133 4.133 14 C 0.141 3.859 15 N -0.590 5.590 16 C -0.276 4.276 17 H 0.077 0.923 18 C 0.052 3.948 19 N -0.879 5.879 20 Si 0.843 3.157 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.260 1.260 24 C 0.164 3.836 25 H 0.030 0.970 26 C -0.134 4.134 27 C -0.222 4.222 28 S 0.229 5.771 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.263 0.737 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 -4.586 23.062 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.061 3.939 4 C -0.265 4.265 5 N -0.139 5.139 6 C -0.121 4.121 7 C 0.373 3.627 8 O -0.413 6.413 9 N -0.347 5.347 10 C 0.025 3.975 11 H 0.109 0.891 12 C -0.157 4.157 13 C -0.173 4.173 14 C 0.016 3.984 15 N -0.314 5.314 16 C -0.404 4.404 17 H 0.095 0.905 18 C -0.151 4.151 19 N -0.517 5.517 20 Si 0.670 3.330 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.185 1.185 24 C 0.057 3.943 25 H 0.047 0.953 26 C -0.191 4.191 27 C -0.364 4.364 28 S 0.486 5.514 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.093 -4.693 23.559 28.370 hybrid contribution -0.697 -0.400 -1.554 1.750 sum -15.791 -5.093 22.004 27.558 Atomic orbital electron populations 1.22813 0.79867 1.03392 1.00407 1.87961 1.20387 1.26270 1.95536 1.20769 0.84255 0.86125 1.02702 1.26563 1.00695 1.07117 0.92091 1.66867 1.03234 1.12470 1.31330 1.20574 0.89882 1.07809 0.93814 1.17007 0.86518 0.77117 0.82051 1.90820 1.16056 1.50693 1.83744 1.45952 1.11688 1.72146 1.04943 1.21800 0.92450 0.96729 0.86521 0.89091 1.21775 0.99272 0.96033 0.98631 1.22029 0.98604 0.99813 0.96853 1.21352 0.96969 0.85489 0.94629 1.44281 1.49630 1.03322 1.34178 1.18572 1.39041 0.95041 0.87708 0.90529 1.25560 0.96613 0.96345 0.96579 1.70079 1.27223 1.45087 1.09315 0.87370 0.84336 0.81581 0.79738 1.21541 1.22396 1.18469 1.20691 0.92002 0.94641 0.86965 0.95260 1.21775 1.01183 0.95755 1.00427 1.26707 1.06204 1.06574 0.96923 1.82757 0.94687 1.63079 1.10899 0.89100 0.93702 0.93430 0.90750 0.89736 0.75933 0.92699 0.92632 0.92663 0.91661 0.95723 0.91288 0.92680 0.92359 0.91575 0.94226 0.79069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.38 10.69 -35.23 -0.38 -3.75 16 3 C 0.14 1.05 6.51 36.00 0.23 1.28 16 4 C 0.01 0.15 6.97 -13.61 -0.09 0.05 16 5 N -0.42 -5.37 10.12 -8.51 -0.09 -5.45 16 6 C 0.01 0.20 6.70 -84.52 -0.57 -0.36 16 7 C 0.59 9.72 7.76 -12.59 -0.10 9.62 16 8 O -0.54 -10.30 16.38 5.25 0.09 -10.21 16 9 N -0.70 -11.20 4.57 -54.81 -0.25 -11.45 16 10 C 0.13 2.39 1.99 -67.81 -0.14 2.25 16 11 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 12 C -0.12 -2.09 5.46 -26.69 -0.15 -2.24 16 13 C -0.13 -2.49 6.08 -26.61 -0.16 -2.65 16 14 C 0.14 3.08 4.60 -3.71 -0.02 3.06 16 15 N -0.59 -13.87 2.47 -164.77 -0.41 -14.28 16 16 C -0.28 -7.49 8.44 -15.06 -0.13 -7.62 16 17 H 0.08 2.24 6.83 -52.48 -0.36 1.88 16 18 C 0.05 1.46 4.82 -17.43 -0.08 1.38 16 19 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 20 Si 0.84 21.25 27.39 -169.99 -4.66 16.59 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.26 -6.29 5.24 56.52 0.30 -5.99 16 24 C 0.16 3.27 3.03 -67.59 -0.20 3.07 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.13 -2.57 7.97 37.16 0.30 -2.27 16 27 C -0.22 -2.44 10.62 29.65 0.31 -2.12 16 28 S 0.23 1.81 22.92 -107.50 -2.46 -0.65 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 5.95 8.12 -40.82 -0.33 5.61 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.54 6.71 -51.93 -0.35 0.19 16 40 H 0.07 1.62 7.01 -51.93 -0.36 1.26 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.06 1.19 7.39 -51.93 -0.38 0.81 16 43 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 44 H 0.04 0.64 7.78 -51.93 -0.40 0.24 16 45 H 0.19 1.89 8.03 -52.49 -0.42 1.47 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -32.97 376.80 -8.25 -41.22 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.87 Total: 3.02 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 0.32 Total: 4.73 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.03 Total: -56.63 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.29 Total: -13.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.66 Total: 16.59 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.46 Total: -0.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.97 -8.25 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994517691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.631 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds