Wall clock time and date at job start Wed Apr 1 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00036 * 2 1 4 4 C 1.50695 * 109.47481 * 180.02562 * 3 2 1 5 5 N 1.30943 * 122.90674 * 269.96528 * 4 3 2 6 6 C 1.29427 * 117.36622 * 180.02562 * 5 4 3 7 7 S 1.70955 * 110.39069 * 359.72226 * 6 5 4 8 8 C 1.35663 * 122.90317 * 89.99625 * 4 3 2 9 9 C 1.46676 * 126.13257 * 359.97083 * 8 4 3 10 10 O 1.21690 * 119.99778 * 49.81236 * 9 8 4 11 11 N 1.34773 * 120.00108 * 229.81144 * 9 8 4 12 12 C 1.46928 * 120.62980 * 355.63932 * 11 9 8 13 13 C 1.53190 * 108.77140 * 126.37249 * 12 11 9 14 14 C 1.53043 * 109.34396 * 54.62017 * 13 12 11 15 15 H 1.08999 * 109.45822 * 58.66816 * 14 13 12 16 16 N 1.46501 * 109.46022 * 178.62746 * 14 13 12 17 17 C 1.36930 * 119.99886 * 274.99688 * 16 14 13 18 18 H 1.07993 * 120.00259 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99719 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00207 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46770 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47461 * 120.00092 * 21 19 17 24 24 H 1.48506 * 109.47040 * 240.00326 * 21 19 17 25 25 C 1.53040 * 109.53622 * 298.68388 * 14 13 12 26 26 H 1.09005 * 109.49327 * 301.34716 * 25 14 13 27 27 C 1.53002 * 109.49546 * 181.28298 * 25 14 13 28 28 C 1.46929 * 120.63226 * 175.62212 * 11 9 8 29 29 H 1.09007 * 109.47215 * 299.99540 * 1 2 3 30 30 H 1.08997 * 109.47563 * 59.99666 * 1 2 3 31 31 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47145 * 60.00164 * 3 2 1 33 33 H 1.09001 * 109.47510 * 300.00415 * 3 2 1 34 34 H 1.08003 * 124.80721 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.58592 * 6.58535 * 12 11 9 36 36 H 1.09005 * 109.70159 * 246.22465 * 12 11 9 37 37 H 1.09006 * 109.49342 * 174.58885 * 13 12 11 38 38 H 1.08995 * 109.49795 * 294.64880 * 13 12 11 39 39 H 0.97001 * 119.99638 * 95.00170 * 16 14 13 40 40 H 0.96991 * 119.99973 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.46899 * 300.13057 * 27 25 14 42 42 H 1.09001 * 109.46968 * 60.12484 * 27 25 14 43 43 H 1.08994 * 109.47080 * 180.12617 * 27 25 14 44 44 H 1.09002 * 109.58726 * 353.41349 * 28 11 9 45 45 H 1.09000 * 109.58986 * 113.70127 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2221 1.1309 1.0984 6 6 5.5063 1.0297 0.9729 7 16 5.9417 0.9873 -0.6797 8 6 4.2466 1.1285 -1.1400 9 6 3.7228 1.1695 -2.5094 10 8 2.9358 2.0390 -2.8340 11 7 4.1132 0.2442 -3.4082 12 6 5.1340 -0.7536 -3.0600 13 6 4.5767 -2.1508 -3.3502 14 6 4.1042 -2.2161 -4.8044 15 1 4.9389 -1.9902 -5.4679 16 7 3.6009 -3.5611 -5.0941 17 6 4.4694 -4.5510 -5.4694 18 1 5.5254 -4.3403 -5.5514 19 6 3.9924 -5.8252 -5.7444 20 7 2.7052 -6.0819 -5.6449 21 14 5.1772 -7.1759 -6.2557 22 1 6.5593 -6.6340 -6.2927 23 1 5.1083 -8.2913 -5.2777 24 1 4.8058 -7.6760 -7.6038 25 6 2.9868 -1.1941 -5.0258 26 1 2.1612 -1.4047 -4.3459 27 6 2.4931 -1.2823 -6.4713 28 6 3.5260 0.2139 -4.7547 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.2037 0.9753 1.7957 35 1 5.3797 -0.6709 -2.0014 36 1 6.0302 -0.5864 -3.6575 37 1 5.3568 -2.8946 -3.1874 38 1 3.7370 -2.3528 -2.6854 39 1 2.6524 -3.7503 -5.0201 40 1 2.3720 -6.9723 -5.8367 41 1 3.3193 -1.0728 -7.1508 42 1 2.1097 -2.2843 -6.6638 43 1 1.6989 -0.5528 -6.6292 44 1 2.7108 0.9351 -4.8141 45 1 4.2891 0.4634 -5.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036205482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:05 Heat of formation + Delta-G solvation = -14.364008 kcal Electronic energy + Delta-G solvation = -28172.186810 eV Core-core repulsion = 24317.407025 eV Total energy + Delta-G solvation = -3854.779785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72772 -39.62997 -37.69822 -37.59064 -34.70097 -32.99900 -31.66127 -31.42432 -29.42344 -28.56814 -26.64319 -25.99039 -24.98126 -24.71797 -22.97636 -21.79324 -21.31386 -19.64099 -18.96807 -18.52146 -17.15158 -16.99639 -16.56030 -16.44873 -15.64585 -15.42261 -15.07992 -14.99426 -14.75736 -14.30954 -14.14861 -13.78631 -13.69123 -13.36052 -13.17033 -12.92349 -12.49557 -12.46271 -12.31705 -11.88006 -11.73232 -11.66010 -11.43793 -11.21439 -10.96800 -10.84078 -10.69974 -10.45573 -10.30088 -10.18309 -9.95458 -9.79102 -9.76674 -9.65775 -9.53646 -9.20718 -8.90341 -8.58994 -6.98255 -5.79267 -3.08033 0.07525 0.84896 1.27416 2.23199 2.63258 3.03936 3.40849 3.46453 3.48848 3.66959 4.10861 4.40758 4.55792 4.73366 4.82382 4.98153 5.14984 5.20060 5.21442 5.25197 5.31255 5.33783 5.43816 5.48694 5.53912 5.62261 5.65077 5.71049 5.74611 5.89233 6.03973 6.10857 6.28090 6.32249 6.40451 6.46173 6.59501 6.77637 6.88695 6.97140 7.03115 7.27461 7.37835 7.67335 7.98382 8.38766 9.50456 10.07602 10.42598 11.43258 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003328 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.327591 B = 8411.296028 C = 8699.616363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.127 3.873 4 C 0.126 3.874 5 N -0.459 5.459 6 C 0.018 3.982 7 S 0.191 5.809 8 C -0.259 4.259 9 C 0.597 3.403 10 O -0.532 6.532 11 N -0.592 5.592 12 C 0.097 3.903 13 C -0.150 4.150 14 C 0.185 3.815 15 H 0.049 0.951 16 N -0.720 5.720 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.110 4.110 26 H 0.071 0.929 27 C -0.135 4.135 28 C 0.122 3.878 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.207 0.793 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 17.235 10.740 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.048 3.952 4 C -0.012 4.012 5 N -0.173 5.173 6 C -0.278 4.278 7 S 0.446 5.554 8 C -0.383 4.383 9 C 0.383 3.617 10 O -0.410 6.410 11 N -0.323 5.323 12 C -0.027 4.027 13 C -0.191 4.191 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.360 5.360 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.130 4.130 26 H 0.089 0.911 27 C -0.193 4.193 28 C 0.000 4.000 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.315 17.327 10.528 20.729 hybrid contribution -0.552 -0.795 0.079 0.971 sum 3.763 16.532 10.607 19.999 Atomic orbital electron populations 1.22773 0.80202 1.03237 1.00070 1.87949 1.20202 1.26304 1.95507 1.20965 0.85524 0.86113 1.02608 1.20050 0.96922 0.98953 0.85246 1.65988 1.05015 1.15260 1.30998 1.28731 0.95244 1.02823 1.00979 1.84115 1.04907 1.63801 1.02556 1.25556 0.97268 1.16163 0.99332 1.16708 0.80971 0.81722 0.82325 1.90795 1.35548 1.36092 1.78589 1.48029 1.40461 1.30314 1.13523 1.22183 0.90370 0.89465 1.00687 1.22682 1.01709 0.93346 1.01358 1.20187 0.94005 0.86100 0.92303 0.93335 1.42402 1.07722 1.04691 1.81159 1.19256 0.90391 0.89499 1.37803 0.91166 1.24724 0.95881 0.97602 1.02572 1.69668 1.11655 1.21002 1.55611 0.86164 0.80034 0.82401 0.77852 1.20587 1.21933 1.21920 1.21754 0.99375 0.93683 0.98230 0.91062 1.21654 1.00192 1.02807 0.94659 1.21794 0.98629 0.98428 0.81110 0.93975 0.93685 0.89150 0.91237 0.89835 0.77647 0.90689 0.90808 0.90387 0.91918 0.78174 0.93563 0.92993 0.90653 0.93779 0.89152 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.62 10.69 -35.23 -0.38 -6.00 16 3 C 0.13 1.71 6.13 36.00 0.22 1.93 16 4 C 0.13 1.75 6.42 -83.89 -0.54 1.21 16 5 N -0.46 -5.85 10.50 -11.53 -0.12 -5.97 16 6 C 0.02 0.17 12.22 51.75 0.63 0.80 16 7 S 0.19 1.83 20.40 -107.50 -2.19 -0.36 16 8 C -0.26 -3.52 5.36 -37.10 -0.20 -3.72 16 9 C 0.60 9.18 7.18 -12.86 -0.09 9.08 16 10 O -0.53 -9.23 15.08 5.20 0.08 -9.15 16 11 N -0.59 -8.62 2.97 -174.31 -0.52 -9.13 16 12 C 0.10 1.32 5.98 -3.71 -0.02 1.29 16 13 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 14 C 0.18 3.44 2.19 -67.89 -0.15 3.29 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 N -0.72 -17.08 4.41 -53.39 -0.24 -17.32 16 17 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 21 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C -0.11 -1.80 2.46 -90.50 -0.22 -2.02 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 C -0.14 -2.14 9.03 37.16 0.34 -1.81 16 28 C 0.12 1.75 5.71 -3.71 -0.02 1.73 16 29 H 0.04 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.16 6.50 -51.93 -0.34 0.82 16 34 H 0.21 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.08 0.94 4.23 -35.94 -0.15 0.79 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.38 9.89 7.51 -40.82 -0.31 9.59 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.32 7.03 -51.93 -0.36 0.95 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -32.60 377.22 -7.90 -40.50 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.58 Total: 7.96 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.66 Total: 3.70 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.15 Total: -59.16 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.30 Total: -15.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.19 Total: -0.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.60 -7.90 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.134 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds