Wall clock time and date at job start Wed Apr 1 2020 00:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00036 * 2 1 4 4 C 1.50695 * 109.47481 * 180.02562 * 3 2 1 5 5 N 1.30943 * 122.90674 * 269.96528 * 4 3 2 6 6 C 1.29427 * 117.36622 * 180.02562 * 5 4 3 7 7 S 1.70955 * 110.39069 * 359.72226 * 6 5 4 8 8 C 1.35663 * 122.90317 * 89.99625 * 4 3 2 9 9 C 1.46676 * 126.13257 * 359.97083 * 8 4 3 10 10 O 1.21690 * 119.99778 * 49.81236 * 9 8 4 11 11 N 1.34773 * 120.00108 * 229.81144 * 9 8 4 12 12 C 1.46928 * 120.62980 * 355.63932 * 11 9 8 13 13 C 1.53190 * 108.77140 * 126.37249 * 12 11 9 14 14 C 1.53043 * 109.34396 * 54.62017 * 13 12 11 15 15 H 1.08999 * 109.45822 * 58.66816 * 14 13 12 16 16 N 1.46501 * 109.46022 * 178.62746 * 14 13 12 17 17 C 1.36930 * 119.99886 * 274.99688 * 16 14 13 18 18 H 1.07993 * 120.00259 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99719 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00207 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46770 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47461 * 120.00092 * 21 19 17 24 24 H 1.48506 * 109.47040 * 240.00326 * 21 19 17 25 25 C 1.53040 * 109.53622 * 298.68388 * 14 13 12 26 26 H 1.09005 * 109.49327 * 301.34716 * 25 14 13 27 27 C 1.53002 * 109.49546 * 181.28298 * 25 14 13 28 28 C 1.46929 * 120.63226 * 175.62212 * 11 9 8 29 29 H 1.09007 * 109.47215 * 299.99540 * 1 2 3 30 30 H 1.08997 * 109.47563 * 59.99666 * 1 2 3 31 31 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47145 * 60.00164 * 3 2 1 33 33 H 1.09001 * 109.47510 * 300.00415 * 3 2 1 34 34 H 1.08003 * 124.80721 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.58592 * 6.58535 * 12 11 9 36 36 H 1.09005 * 109.70159 * 246.22465 * 12 11 9 37 37 H 1.09006 * 109.49342 * 174.58885 * 13 12 11 38 38 H 1.08995 * 109.49795 * 294.64880 * 13 12 11 39 39 H 0.97001 * 119.99638 * 95.00170 * 16 14 13 40 40 H 0.96991 * 119.99973 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.46899 * 300.13057 * 27 25 14 42 42 H 1.09001 * 109.46968 * 60.12484 * 27 25 14 43 43 H 1.08994 * 109.47080 * 180.12617 * 27 25 14 44 44 H 1.09002 * 109.58726 * 353.41349 * 28 11 9 45 45 H 1.09000 * 109.58986 * 113.70127 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2221 1.1309 1.0984 6 6 5.5063 1.0297 0.9729 7 16 5.9417 0.9873 -0.6797 8 6 4.2466 1.1285 -1.1400 9 6 3.7228 1.1695 -2.5094 10 8 2.9358 2.0390 -2.8340 11 7 4.1132 0.2442 -3.4082 12 6 5.1340 -0.7536 -3.0600 13 6 4.5767 -2.1508 -3.3502 14 6 4.1042 -2.2161 -4.8044 15 1 4.9389 -1.9902 -5.4679 16 7 3.6009 -3.5611 -5.0941 17 6 4.4694 -4.5510 -5.4694 18 1 5.5254 -4.3403 -5.5514 19 6 3.9924 -5.8252 -5.7444 20 7 2.7052 -6.0819 -5.6449 21 14 5.1772 -7.1759 -6.2557 22 1 6.5593 -6.6340 -6.2927 23 1 5.1083 -8.2913 -5.2777 24 1 4.8058 -7.6760 -7.6038 25 6 2.9868 -1.1941 -5.0258 26 1 2.1612 -1.4047 -4.3459 27 6 2.4931 -1.2823 -6.4713 28 6 3.5260 0.2139 -4.7547 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.2037 0.9753 1.7957 35 1 5.3797 -0.6709 -2.0014 36 1 6.0302 -0.5864 -3.6575 37 1 5.3568 -2.8946 -3.1874 38 1 3.7370 -2.3528 -2.6854 39 1 2.6524 -3.7503 -5.0201 40 1 2.3720 -6.9723 -5.8367 41 1 3.3193 -1.0728 -7.1508 42 1 2.1097 -2.2843 -6.6638 43 1 1.6989 -0.5528 -6.6292 44 1 2.7108 0.9351 -4.8141 45 1 4.2891 0.4634 -5.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036205482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:04 Heat of formation + Delta-G solvation = -37.135193 kcal Electronic energy + Delta-G solvation = -28173.174242 eV Core-core repulsion = 24317.407025 eV Total energy + Delta-G solvation = -3855.767217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77837 -40.70609 -38.98931 -38.64414 -36.24911 -34.56445 -33.15542 -32.48252 -31.10471 -29.61299 -27.70481 -27.14755 -26.51018 -25.63330 -24.56434 -23.16865 -22.47642 -21.01924 -19.89086 -19.61199 -19.03029 -18.09752 -17.59744 -17.54238 -16.78408 -16.63541 -16.42790 -16.11337 -15.78295 -15.67564 -15.49304 -15.15544 -15.07681 -14.83253 -14.26282 -14.06048 -13.92644 -13.68568 -13.39421 -13.25268 -12.99516 -12.87957 -12.80169 -12.61655 -12.51307 -12.35560 -12.12910 -12.06974 -11.86203 -11.69067 -11.40174 -11.17607 -10.92649 -10.85115 -10.76729 -10.46714 -10.02061 -9.78884 -8.95754 -7.89770 -5.17564 -0.79902 -0.00165 0.46120 1.30987 1.49827 1.50171 1.52048 1.59694 1.93585 2.59146 2.79344 3.19641 3.38995 3.43932 3.75871 3.76787 3.84926 3.92798 4.00917 4.03130 4.24131 4.28111 4.32755 4.38422 4.44190 4.46441 4.52070 4.61081 4.73431 4.74933 4.76697 4.78729 4.84858 4.92492 4.99893 5.16204 5.26385 5.37171 5.47649 5.56765 5.59763 6.01709 6.14422 6.31457 6.49929 6.83437 7.38108 8.13511 8.36978 9.34117 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003328 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.327591 B = 8411.296028 C = 8699.616363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.126 3.874 4 C 0.115 3.885 5 N -0.489 5.489 6 C 0.033 3.967 7 S 0.249 5.751 8 C -0.299 4.299 9 C 0.597 3.403 10 O -0.560 6.560 11 N -0.594 5.594 12 C 0.105 3.895 13 C -0.140 4.140 14 C 0.180 3.820 15 H 0.056 0.944 16 N -0.731 5.731 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.299 1.299 24 H -0.298 1.298 25 C -0.100 4.100 26 H 0.049 0.951 27 C -0.128 4.128 28 C 0.129 3.871 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 18.566 11.553 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.047 3.953 4 C -0.023 4.023 5 N -0.203 5.203 6 C -0.262 4.262 7 S 0.506 5.494 8 C -0.424 4.424 9 C 0.384 3.616 10 O -0.440 6.440 11 N -0.325 5.325 12 C -0.018 4.018 13 C -0.181 4.181 14 C 0.072 3.928 15 H 0.074 0.926 16 N -0.370 5.370 17 C -0.361 4.361 18 H 0.098 0.902 19 C -0.268 4.268 20 N -0.623 5.623 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.227 1.227 24 H -0.225 1.225 25 C -0.120 4.120 26 H 0.067 0.933 27 C -0.186 4.186 28 C 0.006 3.994 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.266 0.734 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.201 0.799 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.123 18.700 11.348 23.004 hybrid contribution -1.370 -1.133 -0.098 1.780 sum 5.753 17.567 11.250 21.639 Atomic orbital electron populations 1.22938 0.78735 1.03905 1.01190 1.87898 1.22035 1.27293 1.95674 1.20977 0.86037 0.85645 1.02611 1.20184 0.97211 0.99006 0.85911 1.66036 1.06406 1.17220 1.30663 1.29529 0.94806 0.99537 1.02319 1.83819 1.01181 1.62470 1.01921 1.25513 1.00162 1.18430 0.98278 1.16950 0.80400 0.81300 0.82985 1.90767 1.36688 1.37241 1.79324 1.48079 1.40615 1.30307 1.13526 1.22187 0.90628 0.86831 1.02202 1.22460 1.00621 0.95694 0.99304 1.20419 0.94817 0.84264 0.93314 0.92629 1.42595 1.06813 1.06315 1.81246 1.19656 0.91075 0.89934 1.35434 0.90164 1.25480 0.97243 1.00000 1.04067 1.69830 1.13539 1.20965 1.57955 0.85162 0.79013 0.79485 0.76660 1.18645 1.22656 1.22549 1.21610 0.97915 0.94467 0.98045 0.93281 1.21564 1.01192 1.01363 0.94496 1.21730 0.99350 0.96473 0.81800 0.91820 0.93581 0.88752 0.89865 0.91079 0.73378 0.89369 0.88002 0.91019 0.94429 0.79852 0.94336 0.91888 0.94080 0.91617 0.89329 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -12.30 10.69 -148.98 -1.59 -13.90 16 3 C 0.13 3.42 6.13 71.23 0.44 3.86 16 4 C 0.12 3.12 6.42 42.09 0.27 3.39 16 5 N -0.49 -11.53 10.50 -190.40 -2.00 -13.53 16 6 C 0.03 0.49 12.22 130.60 1.60 2.09 16 7 S 0.25 3.99 20.40 -56.49 -1.15 2.84 16 8 C -0.30 -7.77 5.36 23.88 0.13 -7.64 16 9 C 0.60 17.88 7.18 86.45 0.62 18.50 16 10 O -0.56 -19.44 15.08 -4.32 -0.07 -19.51 16 11 N -0.59 -16.46 2.97 -823.62 -2.45 -18.91 16 12 C 0.10 2.62 5.98 86.36 0.52 3.13 16 13 C -0.14 -4.65 5.66 30.67 0.17 -4.47 16 14 C 0.18 6.64 2.19 45.02 0.10 6.74 16 15 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 16 N -0.73 -35.23 4.41 -322.81 -1.42 -36.65 16 17 C -0.23 -12.10 9.93 84.04 0.83 -11.27 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.93 13.06 21.65 0.28 -58.64 16 21 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 C -0.10 -3.25 2.46 -10.72 -0.03 -3.28 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 C -0.13 -4.03 9.03 71.98 0.65 -3.38 16 28 C 0.13 3.50 5.71 86.36 0.49 3.99 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 2.05 6.50 -2.39 -0.02 2.04 16 34 H 0.25 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.09 1.99 4.23 -12.56 -0.05 1.94 16 36 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.37 19.80 7.51 -92.71 -0.70 19.11 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.57 7.37 -2.39 -0.02 1.55 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.50 7.03 -2.39 -0.02 2.48 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.70 377.22 1.41 -71.30 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.27 Total: 30.05 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 7.51 Total: 9.75 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.59 Total: -127.73 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.66 Total: -33.40 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.15 Total: 2.84 kcal Total: -72.70 1.41 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.160 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds