Wall clock time and date at job start Wed Apr 1 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99934 * 2 1 4 4 C 1.50701 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.30937 * 122.90391 * 269.71190 * 4 3 2 6 6 C 1.29434 * 117.36287 * 179.74685 * 5 4 3 7 7 S 1.70953 * 110.39001 * 0.50025 * 6 5 4 8 8 C 1.35664 * 122.89908 * 89.99876 * 4 3 2 9 9 C 1.46675 * 126.13308 * 0.02605 * 8 4 3 10 10 O 1.21684 * 120.00248 * 41.89755 * 9 8 4 11 11 N 1.34775 * 119.99849 * 221.89645 * 9 8 4 12 12 C 1.46929 * 120.63344 * 5.60809 * 11 9 8 13 13 C 1.53193 * 108.77497 * 126.36729 * 12 11 9 14 14 C 1.53035 * 109.31313 * 54.63717 * 13 12 11 15 15 H 1.09004 * 109.46262 * 178.61606 * 14 13 12 16 16 N 1.46499 * 109.46063 * 58.65731 * 14 13 12 17 17 C 1.36937 * 120.00197 * 84.99620 * 16 14 13 18 18 H 1.08001 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99759 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99645 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47190 * 59.99935 * 21 19 17 23 23 H 1.48500 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46911 * 299.99914 * 21 19 17 25 25 C 1.53039 * 109.53943 * 298.63296 * 14 13 12 26 26 H 1.09000 * 109.50237 * 301.38282 * 25 14 13 27 27 C 1.53005 * 109.49766 * 181.31460 * 25 14 13 28 28 C 1.46931 * 120.63164 * 185.32825 * 11 9 8 29 29 H 1.08993 * 109.47078 * 59.99835 * 1 2 3 30 30 H 1.08994 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46798 * 299.99840 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00458 * 3 2 1 33 33 H 1.09007 * 109.47041 * 60.00318 * 3 2 1 34 34 H 1.07998 * 124.80890 * 180.22691 * 6 5 4 35 35 H 1.08998 * 109.58857 * 246.15875 * 12 11 9 36 36 H 1.08998 * 109.57941 * 6.58114 * 12 11 9 37 37 H 1.09001 * 109.49761 * 174.59165 * 13 12 11 38 38 H 1.09005 * 109.49536 * 294.68401 * 13 12 11 39 39 H 0.97008 * 119.99743 * 264.99935 * 16 14 13 40 40 H 0.97003 * 119.99761 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.46880 * 60.00269 * 27 25 14 42 42 H 1.09000 * 109.47034 * 180.02562 * 27 25 14 43 43 H 1.09002 * 109.47218 * 299.99994 * 27 25 14 44 44 H 1.08994 * 109.58277 * 353.41912 * 28 11 9 45 45 H 1.08997 * 109.58564 * 113.84316 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2217 1.1361 1.1002 6 6 5.5055 1.0287 0.9758 7 16 5.9430 0.9939 -0.6764 8 6 4.2476 1.1281 -1.1381 9 6 3.7250 1.1698 -2.5080 10 8 2.8338 1.9467 -2.7958 11 7 4.2319 0.3476 -3.4479 12 6 5.2203 -0.6790 -3.0903 13 6 4.7224 -2.0385 -3.5911 14 6 4.4244 -1.9477 -5.0894 15 1 4.0933 -2.9204 -5.4534 16 7 5.6382 -1.5466 -5.8050 17 6 6.5568 -2.4911 -6.1782 18 1 6.3863 -3.5318 -5.9454 19 6 7.7071 -2.1108 -6.8558 20 7 7.9146 -0.8425 -7.1399 21 14 8.9598 -3.3993 -7.3656 22 1 8.3170 -4.3826 -8.2738 23 1 10.0891 -2.7404 -8.0697 24 1 9.4690 -4.0992 -6.1589 25 6 3.3243 -0.9116 -5.3307 26 1 2.4284 -1.1969 -4.7791 27 6 3.0042 -0.8453 -6.8254 28 6 3.8022 0.4569 -4.8487 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8464 0.8901 34 1 6.2022 0.9736 1.7992 35 1 6.1763 -0.4449 -3.5587 36 1 5.3395 -0.7098 -2.0073 37 1 5.4894 -2.7933 -3.4177 38 1 3.8136 -2.3129 -3.0554 39 1 5.7912 -0.6118 -6.0144 40 1 8.7183 -0.5768 -7.6137 41 1 2.6640 -1.8225 -7.1678 42 1 2.2209 -0.1069 -6.9968 43 1 3.9000 -0.5588 -7.3765 44 1 2.9861 1.1753 -4.9255 45 1 4.6401 0.7856 -5.4634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036205483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:09 Heat of formation + Delta-G solvation = -12.496997 kcal Electronic energy + Delta-G solvation = -28444.922190 eV Core-core repulsion = 24590.223365 eV Total energy + Delta-G solvation = -3854.698825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61576 -39.57042 -37.69793 -37.58724 -34.36692 -32.96348 -31.58845 -31.33758 -29.23994 -28.54784 -26.60468 -25.93679 -24.91424 -24.63410 -23.52092 -21.73635 -21.36126 -19.12490 -18.77874 -18.06368 -17.38685 -16.84086 -16.46667 -16.30124 -15.61852 -15.39611 -15.04420 -14.72850 -14.68055 -14.26293 -14.10653 -13.97792 -13.48287 -13.31884 -13.10647 -12.91315 -12.56122 -12.43663 -12.26179 -11.72183 -11.64254 -11.45068 -11.40287 -11.23067 -10.92203 -10.81670 -10.58741 -10.52014 -10.24983 -10.15839 -9.88672 -9.87036 -9.66739 -9.57780 -9.41780 -9.10624 -8.91756 -8.32940 -7.00943 -5.81757 -3.10307 0.16566 1.00415 1.43392 2.30077 2.86743 3.19487 3.40109 3.45656 3.46077 3.72773 4.17614 4.55081 4.55755 4.82054 4.89596 5.13430 5.16415 5.23834 5.26991 5.33023 5.35091 5.48611 5.51663 5.53731 5.54880 5.68384 5.78667 5.82318 5.89846 6.01885 6.03143 6.18339 6.29219 6.36053 6.47203 6.56426 6.65802 6.73001 6.88791 6.95444 6.96424 7.41174 7.55454 7.66032 8.16086 8.36665 9.48385 10.04371 10.39792 11.40515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003684 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.758321 B = 7599.403644 C = 8641.622548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.127 3.873 4 C 0.123 3.877 5 N -0.463 5.463 6 C 0.010 3.990 7 S 0.208 5.792 8 C -0.260 4.260 9 C 0.595 3.405 10 O -0.536 6.536 11 N -0.589 5.589 12 C 0.105 3.895 13 C -0.147 4.147 14 C 0.179 3.821 15 H 0.053 0.947 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.109 4.109 26 H 0.067 0.933 27 C -0.136 4.136 28 C 0.121 3.879 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 3.847 14.231 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.048 3.952 4 C -0.015 4.015 5 N -0.177 5.177 6 C -0.285 4.285 7 S 0.464 5.536 8 C -0.385 4.385 9 C 0.381 3.619 10 O -0.416 6.416 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.189 4.189 14 C 0.068 3.932 15 H 0.071 0.929 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.581 5.581 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.129 4.129 26 H 0.085 0.915 27 C -0.194 4.194 28 C -0.001 4.001 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.222 0.778 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.693 3.889 14.047 16.971 hybrid contribution 0.016 -0.260 -0.109 0.282 sum -8.676 3.630 13.938 16.814 Atomic orbital electron populations 1.22743 0.80461 1.02891 1.00149 1.87916 1.19995 1.26762 1.95538 1.21008 0.85588 0.85818 1.02745 1.20043 0.96829 0.99273 0.85348 1.66004 1.05116 1.15471 1.31077 1.28735 0.95290 1.02983 1.01463 1.84446 1.04582 1.62945 1.01581 1.25623 0.97319 1.16149 0.99414 1.16687 0.81920 0.81001 0.82324 1.90759 1.30233 1.40191 1.80391 1.47996 1.42306 1.33251 1.08413 1.22006 0.92347 0.88042 0.99346 1.22509 1.00577 0.95757 1.00017 1.20220 0.87367 0.95742 0.89855 0.92928 1.42468 1.19234 1.07680 1.66697 1.19177 0.98453 0.89577 1.29768 0.91283 1.24689 0.98549 0.95983 1.01394 1.69635 1.28145 1.14266 1.46021 0.86320 0.81203 0.80685 0.78260 1.21373 1.21812 1.21347 1.21632 0.98707 0.95469 0.97051 0.91472 1.21661 1.01744 1.01129 0.94903 1.21644 1.00812 0.98160 0.79480 0.93693 0.89456 0.94001 0.89352 0.91430 0.77768 0.89146 0.91365 0.90521 0.93085 0.78132 0.93470 0.92716 0.93727 0.90999 0.89516 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.43 10.69 -35.23 -0.38 -5.81 16 3 C 0.13 1.74 6.13 36.01 0.22 1.96 16 4 C 0.12 1.80 6.42 -83.89 -0.54 1.26 16 5 N -0.46 -6.22 10.50 -11.53 -0.12 -6.34 16 6 C 0.01 0.11 12.22 51.75 0.63 0.74 16 7 S 0.21 2.43 20.36 -107.50 -2.19 0.24 16 8 C -0.26 -3.89 5.36 -37.10 -0.20 -4.08 16 9 C 0.60 10.06 7.30 -12.86 -0.09 9.96 16 10 O -0.54 -10.00 14.67 5.20 0.08 -9.92 16 11 N -0.59 -9.77 2.98 -174.57 -0.52 -10.29 16 12 C 0.11 1.72 5.43 -3.71 -0.02 1.70 16 13 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 14 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.72 -16.11 3.64 -53.39 -0.19 -16.30 16 17 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 21 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.11 -1.76 2.66 -90.72 -0.24 -2.00 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 C -0.14 -2.14 9.05 37.16 0.34 -1.81 16 28 C 0.12 2.02 5.40 -3.93 -0.02 2.00 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.09 1.67 7.74 -51.93 -0.40 1.27 16 36 H 0.07 1.01 4.60 -40.29 -0.19 0.82 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.38 9.20 5.94 -40.82 -0.24 8.95 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 44 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 45 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -30.82 372.69 -7.83 -38.66 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.44 Total: 8.46 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.62 Total: 5.05 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.11 Total: -58.68 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.30 Total: -15.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.19 Total: 0.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.82 -7.83 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.159 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds