Wall clock time and date at job start Wed Apr 1 2020 00:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99934 * 2 1 4 4 C 1.50701 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.30937 * 122.90391 * 269.71190 * 4 3 2 6 6 C 1.29434 * 117.36287 * 179.74685 * 5 4 3 7 7 S 1.70953 * 110.39001 * 0.50025 * 6 5 4 8 8 C 1.35664 * 122.89908 * 89.99876 * 4 3 2 9 9 C 1.46675 * 126.13308 * 0.02605 * 8 4 3 10 10 O 1.21684 * 120.00248 * 41.89755 * 9 8 4 11 11 N 1.34775 * 119.99849 * 221.89645 * 9 8 4 12 12 C 1.46929 * 120.63344 * 5.60809 * 11 9 8 13 13 C 1.53193 * 108.77497 * 126.36729 * 12 11 9 14 14 C 1.53035 * 109.31313 * 54.63717 * 13 12 11 15 15 H 1.09004 * 109.46262 * 178.61606 * 14 13 12 16 16 N 1.46499 * 109.46063 * 58.65731 * 14 13 12 17 17 C 1.36937 * 120.00197 * 84.99620 * 16 14 13 18 18 H 1.08001 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99759 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99645 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47190 * 59.99935 * 21 19 17 23 23 H 1.48500 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46911 * 299.99914 * 21 19 17 25 25 C 1.53039 * 109.53943 * 298.63296 * 14 13 12 26 26 H 1.09000 * 109.50237 * 301.38282 * 25 14 13 27 27 C 1.53005 * 109.49766 * 181.31460 * 25 14 13 28 28 C 1.46931 * 120.63164 * 185.32825 * 11 9 8 29 29 H 1.08993 * 109.47078 * 59.99835 * 1 2 3 30 30 H 1.08994 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46798 * 299.99840 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00458 * 3 2 1 33 33 H 1.09007 * 109.47041 * 60.00318 * 3 2 1 34 34 H 1.07998 * 124.80890 * 180.22691 * 6 5 4 35 35 H 1.08998 * 109.58857 * 246.15875 * 12 11 9 36 36 H 1.08998 * 109.57941 * 6.58114 * 12 11 9 37 37 H 1.09001 * 109.49761 * 174.59165 * 13 12 11 38 38 H 1.09005 * 109.49536 * 294.68401 * 13 12 11 39 39 H 0.97008 * 119.99743 * 264.99935 * 16 14 13 40 40 H 0.97003 * 119.99761 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.46880 * 60.00269 * 27 25 14 42 42 H 1.09000 * 109.47034 * 180.02562 * 27 25 14 43 43 H 1.09002 * 109.47218 * 299.99994 * 27 25 14 44 44 H 1.08994 * 109.58277 * 353.41912 * 28 11 9 45 45 H 1.08997 * 109.58564 * 113.84316 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2217 1.1361 1.1002 6 6 5.5055 1.0287 0.9758 7 16 5.9430 0.9939 -0.6764 8 6 4.2476 1.1281 -1.1381 9 6 3.7250 1.1698 -2.5080 10 8 2.8338 1.9467 -2.7958 11 7 4.2319 0.3476 -3.4479 12 6 5.2203 -0.6790 -3.0903 13 6 4.7224 -2.0385 -3.5911 14 6 4.4244 -1.9477 -5.0894 15 1 4.0933 -2.9204 -5.4534 16 7 5.6382 -1.5466 -5.8050 17 6 6.5568 -2.4911 -6.1782 18 1 6.3863 -3.5318 -5.9454 19 6 7.7071 -2.1108 -6.8558 20 7 7.9146 -0.8425 -7.1399 21 14 8.9598 -3.3993 -7.3656 22 1 8.3170 -4.3826 -8.2738 23 1 10.0891 -2.7404 -8.0697 24 1 9.4690 -4.0992 -6.1589 25 6 3.3243 -0.9116 -5.3307 26 1 2.4284 -1.1969 -4.7791 27 6 3.0042 -0.8453 -6.8254 28 6 3.8022 0.4569 -4.8487 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8464 0.8901 34 1 6.2022 0.9736 1.7992 35 1 6.1763 -0.4449 -3.5587 36 1 5.3395 -0.7098 -2.0073 37 1 5.4894 -2.7933 -3.4177 38 1 3.8136 -2.3129 -3.0554 39 1 5.7912 -0.6118 -6.0144 40 1 8.7183 -0.5768 -7.6137 41 1 2.6640 -1.8225 -7.1678 42 1 2.2209 -0.1069 -6.9968 43 1 3.9000 -0.5588 -7.3765 44 1 2.9861 1.1753 -4.9255 45 1 4.6401 0.7856 -5.4634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036205483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:08 Heat of formation + Delta-G solvation = -32.847374 kcal Electronic energy + Delta-G solvation = -28445.804648 eV Core-core repulsion = 24590.223365 eV Total energy + Delta-G solvation = -3855.581284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.78933 -40.75797 -39.05432 -38.59259 -35.93767 -34.57148 -33.09023 -32.45659 -30.96425 -29.61301 -27.66967 -27.13602 -26.31631 -25.61027 -25.29180 -23.13518 -22.56296 -20.38422 -19.85615 -19.38196 -19.23584 -18.00098 -17.52800 -17.48882 -16.79070 -16.53225 -16.32018 -16.10408 -15.94202 -15.68586 -15.52379 -15.19504 -14.87681 -14.76721 -14.36143 -14.20151 -13.94654 -13.64892 -13.33663 -13.07770 -12.98381 -12.83013 -12.70307 -12.56578 -12.44555 -12.36300 -12.14906 -12.01260 -11.95330 -11.58145 -11.37295 -11.17052 -10.88516 -10.84248 -10.70744 -10.46843 -10.03823 -9.71000 -8.90985 -7.86053 -5.12398 -0.82924 0.01825 0.49526 1.29159 1.52516 1.53285 1.58975 1.63961 1.92368 2.62069 2.79918 3.22184 3.40711 3.47560 3.79534 3.85621 3.86181 3.96715 4.02901 4.06561 4.26762 4.32190 4.35317 4.42556 4.49945 4.51328 4.55693 4.58121 4.67690 4.80988 4.81284 4.87144 4.91880 5.00231 5.12360 5.17676 5.24132 5.27916 5.45239 5.57609 5.62897 6.05440 6.20957 6.35286 6.47685 6.86017 7.43484 8.17917 8.42892 9.36746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003684 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.758321 B = 7599.403644 C = 8641.622548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.127 3.873 4 C 0.123 3.877 5 N -0.486 5.486 6 C 0.039 3.961 7 S 0.225 5.775 8 C -0.298 4.298 9 C 0.595 3.405 10 O -0.561 6.561 11 N -0.591 5.591 12 C 0.115 3.885 13 C -0.141 4.141 14 C 0.174 3.826 15 H 0.050 0.950 16 N -0.723 5.723 17 C -0.229 4.229 18 H 0.074 0.926 19 C -0.068 4.068 20 N -0.967 5.967 21 Si 0.961 3.039 22 H -0.284 1.284 23 H -0.302 1.302 24 H -0.279 1.279 25 C -0.099 4.099 26 H 0.083 0.917 27 C -0.130 4.130 28 C 0.125 3.875 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 2.944 16.286 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.049 3.951 4 C -0.015 4.015 5 N -0.200 5.200 6 C -0.256 4.256 7 S 0.482 5.518 8 C -0.423 4.423 9 C 0.382 3.618 10 O -0.442 6.442 11 N -0.321 5.321 12 C -0.008 4.008 13 C -0.181 4.181 14 C 0.065 3.935 15 H 0.068 0.932 16 N -0.364 5.364 17 C -0.361 4.361 18 H 0.092 0.908 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.792 3.208 22 H -0.210 1.210 23 H -0.229 1.229 24 H -0.206 1.206 25 C -0.119 4.119 26 H 0.101 0.899 27 C -0.188 4.188 28 C 0.003 3.997 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.267 0.733 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.143 2.951 16.125 18.770 hybrid contribution 0.085 0.022 -0.636 0.642 sum -9.057 2.974 15.489 18.188 Atomic orbital electron populations 1.22956 0.78630 1.04133 1.01067 1.87870 1.22102 1.26992 1.95688 1.20991 0.85510 0.85853 1.02773 1.20272 0.97411 0.98249 0.85614 1.66082 1.06194 1.17199 1.30502 1.29536 0.94952 0.99146 1.01936 1.84401 1.02322 1.62733 1.02386 1.25463 0.99334 1.19115 0.98387 1.16945 0.81450 0.80269 0.83088 1.90731 1.31354 1.40961 1.81124 1.48001 1.42378 1.33420 1.08321 1.21879 0.91120 0.87608 1.00230 1.22391 1.01173 0.95896 0.98672 1.20403 0.86479 0.96154 0.90422 0.93184 1.42549 1.20052 1.06754 1.67019 1.19517 0.98443 0.90258 1.27879 0.90767 1.25334 1.00586 0.97434 1.02702 1.69786 1.28396 1.15914 1.47670 0.85389 0.78897 0.78599 0.77905 1.21037 1.22893 1.20550 1.21550 0.98299 0.94399 0.97607 0.89914 1.21589 1.01066 1.02063 0.94049 1.21529 1.00064 0.98472 0.79620 0.93674 0.88083 0.92183 0.90730 0.89904 0.73296 0.91560 0.89523 0.91023 0.91395 0.79199 0.94358 0.92129 0.91560 0.93877 0.89270 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -11.07 10.69 -148.98 -1.59 -12.66 16 3 C 0.13 3.38 6.13 71.24 0.44 3.81 16 4 C 0.12 3.45 6.42 42.10 0.27 3.72 16 5 N -0.49 -11.89 10.50 -190.40 -2.00 -13.89 16 6 C 0.04 0.68 12.22 130.60 1.60 2.28 16 7 S 0.22 4.84 20.36 -56.49 -1.15 3.69 16 8 C -0.30 -8.65 5.36 23.88 0.13 -8.52 16 9 C 0.60 20.05 7.30 86.45 0.63 20.69 16 10 O -0.56 -21.09 14.67 -4.30 -0.06 -21.15 16 11 N -0.59 -19.54 2.98 -824.45 -2.46 -21.99 16 12 C 0.11 3.68 5.43 86.36 0.47 4.15 16 13 C -0.14 -4.57 5.78 30.67 0.18 -4.39 16 14 C 0.17 6.31 2.53 45.02 0.11 6.43 16 15 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 16 N -0.72 -32.70 3.64 -322.82 -1.18 -33.87 16 17 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 18 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 19 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 21 Si 0.96 44.25 29.55 68.60 2.03 46.27 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.10 -3.14 2.66 -10.86 -0.03 -3.16 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 C -0.13 -4.00 9.05 71.98 0.65 -3.35 16 28 C 0.13 4.21 5.40 86.22 0.47 4.68 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 2.15 6.21 -2.39 -0.01 2.14 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.25 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.07 2.47 7.74 -2.39 -0.02 2.45 16 36 H 0.09 2.46 4.60 -9.79 -0.05 2.41 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.37 18.45 5.94 -92.70 -0.55 17.90 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.58 7.54 -2.39 -0.02 1.56 16 44 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 45 H 0.06 2.24 6.64 -2.39 -0.02 2.23 16 Total: -1.00 -66.79 372.69 1.77 -65.02 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.43 Total: 30.39 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 7.46 Total: 14.03 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.35 Total: -125.59 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.66 Total: -33.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.15 Total: 3.69 kcal Total: -66.79 1.77 -65.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.177 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds