Wall clock time and date at job start Wed Apr 1 2020 00:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00384 * 2 1 4 4 C 1.50706 * 109.47276 * 180.02562 * 3 2 1 5 5 N 1.28648 * 124.71785 * 89.99735 * 4 3 2 6 6 C 1.33562 * 115.76198 * 180.02562 * 5 4 3 7 7 C 1.47266 * 123.13866 * 180.02562 * 6 5 4 8 8 O 1.21629 * 119.99958 * 173.01273 * 7 6 5 9 9 N 1.34776 * 120.00223 * 353.00615 * 7 6 5 10 10 C 1.46934 * 120.62818 * 352.76003 * 9 7 6 11 11 C 1.53189 * 108.77396 * 126.36491 * 10 9 7 12 12 C 1.53043 * 109.31436 * 54.63379 * 11 10 9 13 13 H 1.08997 * 109.45725 * 178.61234 * 12 11 10 14 14 N 1.46496 * 109.46034 * 58.65169 * 12 11 10 15 15 C 1.36945 * 119.99935 * 85.00271 * 14 12 11 16 16 H 1.08002 * 119.99749 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00178 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99584 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00215 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46874 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46690 * 119.99796 * 19 17 15 22 22 H 1.48495 * 109.47329 * 240.00060 * 19 17 15 23 23 C 1.53035 * 109.53564 * 298.63003 * 12 11 10 24 24 H 1.08998 * 109.53089 * 301.39918 * 23 12 11 25 25 C 1.52997 * 109.49766 * 181.31574 * 23 12 11 26 26 C 1.46926 * 120.63205 * 172.72731 * 9 7 6 27 27 C 1.35208 * 113.71798 * 0.27266 * 6 5 4 28 28 S 1.70766 * 124.71874 * 270.04229 * 4 3 2 29 29 H 1.08999 * 109.47341 * 300.00125 * 1 2 3 30 30 H 1.09006 * 109.47409 * 59.99731 * 1 2 3 31 31 H 1.09004 * 109.47751 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46862 * 60.00318 * 3 2 1 33 33 H 1.08995 * 109.47081 * 300.00120 * 3 2 1 34 34 H 1.08991 * 109.58393 * 6.57667 * 10 9 7 35 35 H 1.08999 * 109.69968 * 246.21751 * 10 9 7 36 36 H 1.09007 * 109.49437 * 174.58516 * 11 10 9 37 37 H 1.09002 * 109.49944 * 294.67906 * 11 10 9 38 38 H 0.97000 * 120.00391 * 264.99875 * 14 12 11 39 39 H 0.97000 * 119.99447 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47487 * 300.16708 * 25 23 12 41 41 H 1.09008 * 109.47307 * 60.16349 * 25 23 12 42 42 H 1.08996 * 109.47557 * 180.16430 * 25 23 12 43 43 H 1.08995 * 109.58387 * 353.42612 * 26 9 7 44 44 H 1.08995 * 109.58379 * 113.84895 * 26 9 7 45 45 H 1.08004 * 125.58276 * 179.72880 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2425 1.1286 -1.0584 6 6 5.5578 1.0238 -0.8510 7 6 6.5415 0.9464 -1.9442 8 8 7.7315 0.9801 -1.6950 9 7 6.1232 0.8382 -3.2208 10 6 4.7004 0.6371 -3.5279 11 6 4.2528 1.7159 -4.5191 12 6 5.1699 1.6899 -5.7440 13 1 4.8384 2.4401 -6.4618 14 7 5.1176 0.3640 -6.3648 15 6 4.1275 0.0672 -7.2631 16 1 3.3850 0.8105 -7.5136 17 6 4.0781 -1.1890 -7.8518 18 7 4.9827 -2.0949 -7.5461 19 14 2.7272 -1.5941 -9.0766 20 1 1.8424 -0.4135 -9.2461 21 1 3.3349 -1.9484 -10.3845 22 1 1.9308 -2.7420 -8.5735 23 6 6.6066 1.9952 -5.3141 24 1 6.6425 2.9712 -4.8301 25 6 7.5171 2.0013 -6.5436 26 6 7.0811 0.9196 -4.3319 27 6 5.9013 0.9901 0.4563 28 16 4.4826 1.1082 1.4026 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0277 -0.0005 32 1 1.6887 1.8462 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 4.1144 0.7162 -2.6123 35 1 4.5557 -0.3484 -3.9704 36 1 3.2260 1.5215 -4.8292 37 1 4.3102 2.6945 -4.0423 38 1 5.7842 -0.3037 -6.1396 39 1 4.9484 -2.9726 -7.9578 40 1 7.4801 1.0256 -7.0281 41 1 7.1792 2.7668 -7.2423 42 1 8.5407 2.2160 -6.2367 43 1 8.0656 1.1850 -3.9469 44 1 7.1328 -0.0428 -4.8410 45 1 6.9073 0.9046 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036316988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:37 Heat of formation + Delta-G solvation = -1.797357 kcal Electronic energy + Delta-G solvation = -28156.803153 eV Core-core repulsion = 24302.568299 eV Total energy + Delta-G solvation = -3854.234854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82889 -39.12036 -38.05559 -37.43566 -34.15437 -32.73749 -31.78529 -31.26278 -29.05197 -28.45713 -27.09750 -26.16307 -25.18709 -23.92761 -23.35647 -21.52756 -21.09817 -19.79389 -18.77665 -17.87341 -17.25428 -16.91454 -16.43917 -16.04356 -15.98442 -15.43513 -15.20452 -14.54577 -14.47784 -14.10437 -14.03166 -13.87282 -13.46299 -13.17578 -13.00788 -12.72749 -12.56060 -12.43999 -12.27923 -11.93502 -11.76726 -11.50540 -11.29921 -11.10763 -10.88111 -10.68510 -10.60952 -10.39408 -10.11081 -10.09679 -9.97511 -9.88862 -9.74849 -9.48201 -9.17794 -9.08138 -8.68757 -8.07211 -6.88516 -5.72427 -2.99931 0.28479 0.97727 1.37335 1.79847 3.24990 3.40184 3.45010 3.49829 3.50724 3.52909 4.00785 4.52854 4.63015 4.78023 4.93982 4.99246 5.03250 5.11215 5.16837 5.31013 5.42439 5.42710 5.51121 5.53669 5.73733 5.78160 5.96073 6.03792 6.10544 6.18994 6.26415 6.36360 6.53601 6.60198 6.67203 6.70238 6.79610 6.89137 6.93150 7.05528 7.18794 7.29103 7.74962 7.83358 8.38619 8.46338 9.57665 10.16019 10.51121 11.50367 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003899 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.093090 B = 7180.074160 C = 9141.492498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.013 3.987 5 N -0.407 5.407 6 C 0.022 3.978 7 C 0.586 3.414 8 O -0.551 6.551 9 N -0.577 5.577 10 C 0.064 3.936 11 C -0.140 4.140 12 C 0.176 3.824 13 H 0.048 0.952 14 N -0.718 5.718 15 C -0.233 4.233 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.107 4.107 24 H 0.064 0.936 25 C -0.137 4.137 26 C 0.118 3.882 27 C -0.224 4.224 28 S 0.228 5.772 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.383 0.617 39 H 0.253 0.747 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 9.374 20.078 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.265 4.265 5 N -0.124 5.124 6 C -0.113 4.113 7 C 0.371 3.629 8 O -0.430 6.430 9 N -0.306 5.306 10 C -0.058 4.058 11 C -0.181 4.181 12 C 0.066 3.934 13 H 0.066 0.934 14 N -0.360 5.360 15 C -0.364 4.364 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.735 3.265 20 H -0.207 1.207 21 H -0.221 1.221 22 H -0.220 1.220 23 C -0.127 4.127 24 H 0.082 0.918 25 C -0.195 4.195 26 C -0.004 4.004 27 C -0.366 4.366 28 S 0.485 5.515 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.218 0.782 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.746 9.253 20.608 23.083 hybrid contribution -0.158 -0.464 -1.597 1.671 sum -4.903 8.789 19.011 21.511 Atomic orbital electron populations 1.22817 0.79813 1.03484 1.00344 1.87973 1.20444 1.26040 1.95519 1.20787 0.84199 0.86332 1.02728 1.26954 1.01100 1.06224 0.92216 1.66757 1.03390 1.13636 1.28624 1.20562 0.89757 1.07265 0.93731 1.17080 0.86426 0.77521 0.81919 1.90767 1.15867 1.52946 1.83458 1.47964 1.10254 1.67999 1.04358 1.23099 0.79447 0.99887 1.03351 1.22397 1.01184 0.97009 0.97520 1.20257 0.91080 0.89653 0.92394 0.93426 1.42467 1.33818 1.09845 1.49916 1.19269 1.04719 0.96774 1.15640 0.91277 1.24690 0.98867 0.96551 1.00806 1.69667 1.36226 1.05231 1.47033 0.86175 0.81462 0.77814 0.81085 1.20686 1.22052 1.22043 1.21691 0.97435 0.97817 0.95762 0.91765 1.21667 0.97378 1.03407 0.97002 1.21712 0.92199 1.00080 0.86444 1.26639 1.06147 1.07029 0.96746 1.82708 0.94764 1.63094 1.10901 0.93823 0.93311 0.89038 0.90783 0.89619 0.83931 0.90909 0.91223 0.93789 0.78162 0.93675 0.91015 0.92832 0.93825 0.89956 0.90500 0.79149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.07 10.69 -35.23 -0.38 -4.45 16 3 C 0.14 1.24 6.51 36.01 0.23 1.47 16 4 C 0.01 0.15 6.97 -13.61 -0.09 0.05 16 5 N -0.41 -5.86 6.72 -8.51 -0.06 -5.92 16 6 C 0.02 0.33 6.52 -84.52 -0.55 -0.22 16 7 C 0.59 10.64 7.65 -12.59 -0.10 10.55 16 8 O -0.55 -10.96 16.18 5.25 0.08 -10.87 16 9 N -0.58 -10.69 2.97 -174.10 -0.52 -11.21 16 10 C 0.06 1.21 6.02 -3.71 -0.02 1.19 16 11 C -0.14 -2.59 5.78 -26.61 -0.15 -2.75 16 12 C 0.18 3.53 2.53 -67.89 -0.17 3.36 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -17.40 3.64 -53.39 -0.19 -17.59 16 15 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 19 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C -0.11 -1.89 2.67 -90.50 -0.24 -2.13 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.14 -2.32 9.05 37.16 0.34 -1.98 16 26 C 0.12 2.18 5.40 -3.71 -0.02 2.16 16 27 C -0.22 -2.66 10.62 29.65 0.31 -2.35 16 28 S 0.23 2.01 22.92 -107.50 -2.46 -0.45 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.14 2.53 3.55 -90.57 -0.32 2.21 16 35 H 0.07 1.61 7.74 -51.93 -0.40 1.21 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.38 9.98 5.93 -40.82 -0.24 9.74 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 1.40 7.53 -51.93 -0.39 1.01 16 41 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.49 7.06 -51.93 -0.37 1.12 16 44 H 0.08 1.57 6.64 -51.93 -0.34 1.22 16 45 H 0.19 2.01 8.04 -52.48 -0.42 1.59 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -32.88 375.33 -8.45 -41.32 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.68 Total: 9.66 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.40 Total: 3.76 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.04 Total: -61.94 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.29 Total: -15.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -8.45 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036316988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.527 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds