Wall clock time and date at job start Wed Apr 1 2020 00:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99778 * 2 1 4 4 C 1.50698 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.28649 * 124.72149 * 90.29930 * 4 3 2 6 6 C 1.33553 * 115.76759 * 180.18560 * 5 4 3 7 7 C 1.47266 * 123.14308 * 179.83049 * 6 5 4 8 8 O 1.21636 * 119.99667 * 171.46183 * 7 6 5 9 9 N 1.34773 * 119.99982 * 351.45196 * 7 6 5 10 10 C 1.46929 * 120.62820 * 351.60540 * 9 7 6 11 11 C 1.53195 * 108.77270 * 233.58227 * 10 9 7 12 12 C 1.53041 * 109.31246 * 305.36482 * 11 10 9 13 13 H 1.08994 * 109.45995 * 181.38886 * 12 11 10 14 14 N 1.46507 * 109.46187 * 301.34588 * 12 11 10 15 15 C 1.36936 * 119.99972 * 275.00230 * 14 12 11 16 16 H 1.07995 * 120.00172 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99951 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00035 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47145 * 89.99847 * 19 17 15 21 21 H 1.48504 * 109.46926 * 209.99893 * 19 17 15 22 22 H 1.48496 * 109.47248 * 329.99810 * 19 17 15 23 23 C 1.53039 * 109.53767 * 61.36749 * 12 11 10 24 24 H 1.08994 * 109.49887 * 58.58321 * 23 12 11 25 25 C 1.53002 * 109.49972 * 178.68414 * 23 12 11 26 26 C 1.46928 * 120.63036 * 171.57606 * 9 7 6 27 27 C 1.35213 * 113.71681 * 359.55757 * 6 5 4 28 28 S 1.70772 * 124.71938 * 270.02226 * 4 3 2 29 29 H 1.09000 * 109.47204 * 299.99391 * 1 2 3 30 30 H 1.08998 * 109.47628 * 59.99649 * 1 2 3 31 31 H 1.09007 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46845 * 60.00274 * 3 2 1 33 33 H 1.09001 * 109.47256 * 300.00424 * 3 2 1 34 34 H 1.09003 * 109.58575 * 113.79454 * 10 9 7 35 35 H 1.08992 * 109.58718 * 353.36862 * 10 9 7 36 36 H 1.08999 * 109.49406 * 185.41946 * 11 10 9 37 37 H 1.08997 * 109.52617 * 65.33300 * 11 10 9 38 38 H 0.97002 * 119.99586 * 94.99579 * 14 12 11 39 39 H 0.97004 * 120.00076 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47218 * 59.99632 * 25 23 12 41 41 H 1.08993 * 109.47346 * 179.97438 * 25 23 12 42 42 H 1.08997 * 109.46945 * 300.00062 * 25 23 12 43 43 H 1.08994 * 109.58442 * 246.20623 * 26 9 7 44 44 H 1.08998 * 109.58359 * 6.49186 * 26 9 7 45 45 H 1.08001 * 125.58653 * 180.26820 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2430 1.1344 -1.0583 6 6 5.5578 1.0252 -0.8511 7 6 6.5416 0.9488 -1.9442 8 8 7.7312 1.0067 -1.6969 9 7 6.1239 0.8147 -3.2185 10 6 4.7086 0.5594 -3.5195 11 6 4.6098 -0.6866 -4.4051 12 6 5.4916 -0.4997 -5.6419 13 1 5.4040 -1.3746 -6.2860 14 7 5.0571 0.6916 -6.3757 15 6 4.0333 0.6027 -7.2807 16 1 3.5464 -0.3456 -7.4539 17 6 3.6219 1.7313 -7.9764 18 7 4.2156 2.8870 -7.7657 19 14 2.2258 1.6099 -9.2114 20 1 0.9341 1.8664 -8.5252 21 1 2.4250 2.6172 -10.2842 22 1 2.2084 0.2496 -9.8067 23 6 6.9497 -0.3287 -5.2098 24 1 7.2661 -1.2039 -4.6425 25 6 7.8348 -0.1747 -6.4483 26 6 7.0751 0.9215 -4.3333 27 6 5.9018 0.9971 0.4563 28 16 4.4826 1.1089 1.4026 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 4.2866 1.4159 -4.0453 35 1 4.1621 0.3923 -2.5914 36 1 3.5749 -0.8316 -4.7148 37 1 4.9479 -1.5589 -3.8458 38 1 5.4946 1.5433 -6.2203 39 1 3.9279 3.6757 -8.2515 40 1 7.5186 0.7016 -7.0142 41 1 8.8730 -0.0525 -6.1401 42 1 7.7431 -1.0631 -7.0731 43 1 6.8461 1.8074 -4.9254 44 1 8.0897 0.9957 -3.9419 45 1 6.9083 0.9178 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036316990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:44 Heat of formation + Delta-G solvation = -4.625314 kcal Electronic energy + Delta-G solvation = -28136.844811 eV Core-core repulsion = 24282.487328 eV Total energy + Delta-G solvation = -3854.357483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78783 -39.12841 -38.03976 -37.42292 -34.16806 -32.74730 -31.75493 -31.28156 -29.07300 -28.42415 -27.08168 -26.14724 -25.19455 -23.89328 -23.36731 -21.54678 -21.07688 -19.75076 -18.77577 -17.87697 -17.26268 -16.88577 -16.38288 -16.00344 -15.96487 -15.44845 -15.25041 -14.68992 -14.40762 -14.10152 -13.98129 -13.76184 -13.42153 -13.17621 -13.03226 -12.75092 -12.53050 -12.44644 -12.26429 -11.94479 -11.74702 -11.50230 -11.29997 -11.11021 -10.87217 -10.68269 -10.57914 -10.40111 -10.14612 -10.07446 -9.97517 -9.86993 -9.75372 -9.49079 -9.22852 -9.10206 -8.76797 -8.09429 -6.89929 -5.73417 -3.00942 0.30740 1.00716 1.40309 1.83598 3.26202 3.40765 3.44324 3.48061 3.50200 3.51392 4.04396 4.56334 4.62151 4.80069 4.96529 5.02278 5.06092 5.13113 5.21073 5.31715 5.42323 5.42603 5.49606 5.56608 5.72726 5.76586 5.94299 6.02288 6.08259 6.16376 6.24791 6.35865 6.52470 6.58898 6.63759 6.71196 6.76862 6.88155 6.90054 7.05175 7.13933 7.29362 7.73865 7.80679 8.37622 8.45281 9.56684 10.14682 10.50113 11.49267 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.003944 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.880851 B = 7098.295877 C = 9079.270415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.014 3.986 5 N -0.408 5.408 6 C 0.020 3.980 7 C 0.587 3.413 8 O -0.551 6.551 9 N -0.579 5.579 10 C 0.090 3.910 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.233 4.233 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.903 3.097 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.107 4.107 24 H 0.065 0.935 25 C -0.137 4.137 26 C 0.118 3.882 27 C -0.224 4.224 28 S 0.224 5.776 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 -4.264 20.365 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.265 4.265 5 N -0.125 5.125 6 C -0.115 4.115 7 C 0.372 3.628 8 O -0.430 6.430 9 N -0.308 5.308 10 C -0.033 4.033 11 C -0.190 4.190 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.364 4.364 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.735 3.265 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.209 1.209 23 C -0.127 4.127 24 H 0.083 0.917 25 C -0.194 4.194 26 C -0.004 4.004 27 C -0.366 4.366 28 S 0.481 5.519 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.544 -4.392 20.875 21.483 hybrid contribution -0.323 0.420 -1.554 1.642 sum -2.866 -3.972 19.321 19.933 Atomic orbital electron populations 1.22813 0.79858 1.03366 1.00440 1.87952 1.20414 1.26189 1.95548 1.20794 0.84211 0.86209 1.02832 1.26861 1.01017 1.06537 0.92055 1.67062 1.03303 1.12890 1.29286 1.20536 0.89879 1.07419 0.93668 1.17080 0.86415 0.77456 0.81868 1.90765 1.15890 1.52967 1.83410 1.47967 1.10847 1.67500 1.04503 1.22644 0.79513 0.98973 1.02124 1.22524 1.02030 0.96239 0.98161 1.20242 0.89852 0.91816 0.91375 0.93335 1.42459 1.40734 1.06211 1.46596 1.19226 1.08784 0.94569 1.13862 0.91320 1.24681 0.99934 0.95652 1.00589 1.69655 1.43919 0.99155 1.45479 0.86244 0.82291 0.76895 0.81082 1.21915 1.21948 1.20891 1.21689 0.97556 0.97249 0.96228 0.91660 1.21663 0.97537 1.03126 0.97117 1.21721 0.93117 0.98849 0.86745 1.26640 1.06068 1.07106 0.96782 1.82697 0.94789 1.63292 1.11134 0.93819 0.93265 0.89121 0.90790 0.89490 0.90301 0.85967 0.90972 0.93816 0.78149 0.93637 0.91045 0.93801 0.92824 0.90470 0.89826 0.79217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.10 10.69 -35.23 -0.38 -4.47 16 3 C 0.14 1.32 6.51 36.00 0.23 1.56 16 4 C 0.01 0.16 6.97 -13.61 -0.09 0.06 16 5 N -0.41 -6.08 6.83 -8.51 -0.06 -6.14 16 6 C 0.02 0.31 6.46 -84.53 -0.55 -0.24 16 7 C 0.59 10.65 7.64 -12.59 -0.10 10.55 16 8 O -0.55 -10.89 16.17 5.25 0.08 -10.80 16 9 N -0.58 -10.66 2.97 -174.09 -0.52 -11.18 16 10 C 0.09 1.67 5.71 -3.71 -0.02 1.65 16 11 C -0.15 -2.77 5.78 -26.61 -0.15 -2.93 16 12 C 0.18 3.55 2.53 -67.89 -0.17 3.38 16 13 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -17.25 3.64 -53.38 -0.19 -17.44 16 15 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 19 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -1.90 2.67 -90.50 -0.24 -2.14 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 C -0.14 -2.31 9.05 37.16 0.34 -1.98 16 26 C 0.12 2.16 5.43 -3.71 -0.02 2.14 16 27 C -0.22 -2.70 10.62 29.66 0.32 -2.39 16 28 S 0.22 2.03 22.92 -107.50 -2.46 -0.43 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 35 H 0.12 2.18 4.14 -69.20 -0.29 1.90 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.38 9.86 5.93 -40.82 -0.24 9.62 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.54 6.64 -51.93 -0.34 1.20 16 44 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 45 H 0.19 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -32.35 375.62 -8.40 -40.75 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.65 Total: 9.70 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.41 Total: 4.15 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.05 Total: -61.71 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.29 Total: -15.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.46 Total: -0.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.35 -8.40 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036316990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.121 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds