Wall clock time and date at job start Wed Apr 1 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99532 * 2 1 4 4 C 1.50704 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80660 * 90.03881 * 4 3 2 6 6 C 1.30938 * 117.36403 * 179.69975 * 5 4 3 7 7 C 1.35668 * 114.19123 * 0.48162 * 6 5 4 8 8 C 1.46680 * 126.12931 * 179.82863 * 7 6 5 9 9 O 1.21683 * 120.00414 * 43.90894 * 8 7 6 10 10 N 1.34781 * 119.99725 * 223.90946 * 8 7 6 11 11 C 1.46932 * 120.63050 * 356.10246 * 10 8 7 12 12 C 1.53622 * 108.53872 * 126.37165 * 11 10 8 13 13 C 1.53035 * 109.24515 * 54.85905 * 12 11 10 14 14 H 1.08996 * 109.46416 * 178.48730 * 13 12 11 15 15 N 1.46503 * 109.45894 * 58.52535 * 13 12 11 16 16 C 1.36938 * 119.99617 * 84.93866 * 15 13 12 17 17 H 1.08005 * 120.00258 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99807 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47074 * 89.99771 * 20 18 16 22 22 H 1.48491 * 109.47379 * 209.99759 * 20 18 16 23 23 H 1.48502 * 109.46851 * 329.99816 * 20 18 16 24 24 C 1.53045 * 109.53865 * 298.51048 * 13 12 11 25 25 H 1.09004 * 109.49371 * 301.41719 * 24 13 12 26 26 C 1.52995 * 109.52824 * 181.33308 * 24 13 12 27 27 C 1.46923 * 120.62896 * 176.39087 * 10 8 7 28 28 S 1.70954 * 124.80003 * 270.00201 * 4 3 2 29 29 H 1.08992 * 109.47427 * 59.99670 * 1 2 3 30 30 H 1.09004 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47176 * 299.99269 * 1 2 3 32 32 H 1.08994 * 109.47490 * 60.00312 * 3 2 1 33 33 H 1.09002 * 109.47211 * 300.00228 * 3 2 1 34 34 H 1.07997 * 122.90707 * 180.30820 * 6 5 4 35 35 H 1.08999 * 109.58368 * 246.20467 * 11 10 8 36 36 H 1.08997 * 109.58571 * 6.63241 * 11 10 8 37 37 H 1.09000 * 109.63623 * 294.86601 * 12 11 10 38 38 H 1.09000 * 109.45663 * 174.74288 * 12 11 10 39 39 H 0.96993 * 120.00227 * 264.92949 * 15 13 12 40 40 H 0.97003 * 119.99544 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46957 * 300.14483 * 26 24 13 42 42 H 1.09001 * 109.47255 * 60.14056 * 26 24 13 43 43 H 1.09001 * 109.47300 * 180.14577 * 26 24 13 44 44 H 1.09002 * 109.58884 * 353.36470 * 27 10 8 45 45 H 1.09002 * 109.59123 * 113.79732 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1293 -1.0637 6 6 5.5434 1.0328 -0.8946 7 6 5.9333 0.9960 0.4043 8 6 7.3130 0.8877 0.8905 9 8 8.1923 1.5561 0.3797 10 7 7.6067 0.0479 1.9029 11 6 6.5437 -0.7018 2.5861 12 6 6.9067 -2.1943 2.5634 13 6 8.2987 -2.3842 3.1702 14 1 8.5488 -3.4450 3.1805 15 7 8.3081 -1.8674 4.5411 16 6 7.8912 -2.6623 5.5752 17 1 7.5550 -3.6700 5.3803 18 6 7.8996 -2.1726 6.8740 19 7 8.3088 -0.9444 7.1116 20 14 7.3302 -3.2566 8.2847 21 1 8.4879 -4.0125 8.8267 22 1 6.7470 -2.4094 9.3558 23 1 6.3030 -4.2098 7.7931 24 6 9.3302 -1.6253 2.3322 25 1 9.3063 -1.9922 1.3061 26 6 10.7261 -1.8423 2.9198 27 6 8.9954 -0.1304 2.3485 28 16 4.4857 1.1094 1.4027 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 6.2406 0.9837 -1.7180 35 1 6.4596 -0.3589 3.6173 36 1 5.5969 -0.5467 2.0688 37 1 6.9057 -2.5560 1.5351 38 1 6.1760 -2.7546 3.1468 39 1 8.6098 -0.9624 4.7161 40 1 8.3150 -0.6023 8.0193 41 1 10.7491 -1.4763 3.9462 42 1 10.9638 -2.9060 2.9080 43 1 11.4596 -1.2994 2.3239 44 1 9.6667 0.4017 1.6745 45 1 9.1071 0.2580 3.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036319610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:23 Heat of formation + Delta-G solvation = -12.509993 kcal Electronic energy + Delta-G solvation = -27715.436678 eV Core-core repulsion = 23860.737289 eV Total energy + Delta-G solvation = -3854.699389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.41995 -39.59300 -38.12438 -37.60625 -34.38191 -32.98050 -31.71239 -31.40985 -29.24409 -28.87694 -26.72877 -26.15438 -25.07444 -24.02330 -23.53529 -21.77670 -21.48985 -19.28953 -18.76137 -18.10813 -17.40132 -16.97259 -16.74178 -16.32865 -15.93677 -15.49401 -15.01962 -14.81723 -14.62720 -14.29992 -14.10674 -13.97238 -13.58600 -13.33717 -13.11215 -12.85911 -12.69869 -12.56087 -12.29822 -11.84569 -11.68634 -11.67282 -11.46362 -11.25892 -10.94541 -10.83799 -10.64308 -10.54286 -10.24688 -10.21577 -10.06340 -9.89245 -9.78086 -9.59324 -9.36393 -9.11191 -8.91069 -8.34803 -7.01826 -5.82442 -3.11169 0.10949 0.96085 1.40394 2.34666 2.90757 3.21104 3.37984 3.39443 3.45464 3.46620 4.02847 4.54273 4.54583 4.55329 4.89077 4.95725 4.99477 5.04415 5.09946 5.19874 5.25024 5.31463 5.32979 5.46748 5.52859 5.66613 5.75675 5.85693 5.89580 5.99997 6.01615 6.16972 6.27546 6.34349 6.45448 6.54710 6.63377 6.63407 6.70724 6.86855 6.94166 7.41327 7.53545 7.65880 8.15215 8.35900 9.47734 10.03495 10.38799 11.39869 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003572 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.931605 B = 7837.620956 C = 9595.419227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.140 3.860 4 C 0.022 3.978 5 N -0.459 5.459 6 C 0.101 3.899 7 C -0.275 4.275 8 C 0.590 3.410 9 O -0.534 6.534 10 N -0.590 5.590 11 C 0.103 3.897 12 C -0.147 4.147 13 C 0.178 3.822 14 H 0.053 0.947 15 N -0.719 5.719 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.109 4.109 25 H 0.067 0.933 26 C -0.137 4.137 27 C 0.121 3.879 28 S 0.230 5.770 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 3.824 -14.023 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.252 4.252 5 N -0.175 5.175 6 C -0.056 4.056 7 C -0.400 4.400 8 C 0.376 3.624 9 O -0.413 6.413 10 N -0.321 5.321 11 C -0.020 4.020 12 C -0.188 4.188 13 C 0.068 3.932 14 H 0.071 0.929 15 N -0.361 5.361 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.129 4.129 25 H 0.085 0.915 26 C -0.195 4.195 27 C -0.001 4.001 28 S 0.487 5.513 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.202 0.798 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.190 3.921 -13.552 18.007 hybrid contribution 0.031 -0.208 0.208 0.296 sum -11.159 3.713 -13.344 17.787 Atomic orbital electron populations 1.22816 0.79928 1.03430 1.00318 1.87982 1.20355 1.26126 1.95515 1.20796 0.84466 0.86206 1.02556 1.27028 1.00718 1.04639 0.92802 1.66124 1.04784 1.15062 1.31507 1.21994 0.90707 0.97800 0.95111 1.25900 0.98799 1.17167 0.98137 1.16780 0.85477 0.80242 0.79950 1.90814 1.47401 1.44742 1.58378 1.48036 1.09468 1.41907 1.32704 1.22190 0.88374 0.93107 0.98297 1.22587 1.01958 0.94337 0.99951 1.20223 0.90611 0.96575 0.85790 0.92889 1.42481 1.78094 1.15552 0.99993 1.19219 1.35600 0.95734 0.86397 0.91212 1.24697 1.02175 0.96495 0.97292 1.69647 1.53327 1.15150 1.19903 0.86243 0.78225 0.79432 0.82577 1.21816 1.21883 1.20819 1.21722 0.96780 0.94848 0.99528 0.91484 1.21662 0.94374 1.01429 1.02019 1.21742 0.80629 0.96869 1.00856 1.84325 0.95221 1.62241 1.09494 0.93641 0.89036 0.93584 0.90681 0.89976 0.79792 0.88953 0.91327 0.93147 0.90481 0.78112 0.93508 0.90967 0.92700 0.93678 0.89477 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.98 10.69 -35.23 -0.38 -4.35 16 3 C 0.14 1.27 6.51 36.01 0.23 1.51 16 4 C 0.02 0.27 7.02 -13.29 -0.09 0.17 16 5 N -0.46 -6.20 10.51 -11.50 -0.12 -6.32 16 6 C 0.10 1.37 11.30 -18.85 -0.21 1.16 16 7 C -0.28 -3.99 5.53 -37.09 -0.21 -4.19 16 8 C 0.59 9.86 7.57 -12.85 -0.10 9.76 16 9 O -0.53 -10.20 16.51 5.20 0.09 -10.12 16 10 N -0.59 -9.71 2.97 -174.04 -0.52 -10.23 16 11 C 0.10 1.68 5.69 -3.48 -0.02 1.66 16 12 C -0.15 -2.44 5.79 -26.39 -0.15 -2.59 16 13 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 15 N -0.72 -16.12 3.64 -53.38 -0.19 -16.32 16 16 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 17 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 20 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.11 -1.75 2.67 -90.50 -0.24 -1.99 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 C -0.14 -2.14 9.06 37.15 0.34 -1.80 16 27 C 0.12 2.01 5.41 -3.71 -0.02 1.99 16 28 S 0.23 2.84 19.98 -107.50 -2.15 0.69 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.09 1.71 7.74 -51.93 -0.40 1.31 16 36 H 0.07 1.01 3.94 -29.72 -0.12 0.89 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.38 9.22 5.92 -40.82 -0.24 8.98 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.43 7.02 -51.93 -0.36 1.07 16 45 H 0.08 1.46 6.64 -51.93 -0.34 1.11 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -30.89 376.22 -8.15 -39.04 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.48 Total: 7.88 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.22 Total: 3.47 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.11 Total: -58.68 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.29 Total: -14.47 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.15 Total: 0.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.89 -8.15 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036319610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.533 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds