Wall clock time and date at job start Wed Apr 1 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99532 * 2 1 4 4 C 1.50704 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80660 * 90.03881 * 4 3 2 6 6 C 1.30938 * 117.36403 * 179.69975 * 5 4 3 7 7 C 1.35668 * 114.19123 * 0.48162 * 6 5 4 8 8 C 1.46680 * 126.12931 * 179.82863 * 7 6 5 9 9 O 1.21683 * 120.00414 * 43.90894 * 8 7 6 10 10 N 1.34781 * 119.99725 * 223.90946 * 8 7 6 11 11 C 1.46932 * 120.63050 * 356.10246 * 10 8 7 12 12 C 1.53622 * 108.53872 * 126.37165 * 11 10 8 13 13 C 1.53035 * 109.24515 * 54.85905 * 12 11 10 14 14 H 1.08996 * 109.46416 * 178.48730 * 13 12 11 15 15 N 1.46503 * 109.45894 * 58.52535 * 13 12 11 16 16 C 1.36938 * 119.99617 * 84.93866 * 15 13 12 17 17 H 1.08005 * 120.00258 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99807 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47074 * 89.99771 * 20 18 16 22 22 H 1.48491 * 109.47379 * 209.99759 * 20 18 16 23 23 H 1.48502 * 109.46851 * 329.99816 * 20 18 16 24 24 C 1.53045 * 109.53865 * 298.51048 * 13 12 11 25 25 H 1.09004 * 109.49371 * 301.41719 * 24 13 12 26 26 C 1.52995 * 109.52824 * 181.33308 * 24 13 12 27 27 C 1.46923 * 120.62896 * 176.39087 * 10 8 7 28 28 S 1.70954 * 124.80003 * 270.00201 * 4 3 2 29 29 H 1.08992 * 109.47427 * 59.99670 * 1 2 3 30 30 H 1.09004 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47176 * 299.99269 * 1 2 3 32 32 H 1.08994 * 109.47490 * 60.00312 * 3 2 1 33 33 H 1.09002 * 109.47211 * 300.00228 * 3 2 1 34 34 H 1.07997 * 122.90707 * 180.30820 * 6 5 4 35 35 H 1.08999 * 109.58368 * 246.20467 * 11 10 8 36 36 H 1.08997 * 109.58571 * 6.63241 * 11 10 8 37 37 H 1.09000 * 109.63623 * 294.86601 * 12 11 10 38 38 H 1.09000 * 109.45663 * 174.74288 * 12 11 10 39 39 H 0.96993 * 120.00227 * 264.92949 * 15 13 12 40 40 H 0.97003 * 119.99544 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46957 * 300.14483 * 26 24 13 42 42 H 1.09001 * 109.47255 * 60.14056 * 26 24 13 43 43 H 1.09001 * 109.47300 * 180.14577 * 26 24 13 44 44 H 1.09002 * 109.58884 * 353.36470 * 27 10 8 45 45 H 1.09002 * 109.59123 * 113.79732 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1293 -1.0637 6 6 5.5434 1.0328 -0.8946 7 6 5.9333 0.9960 0.4043 8 6 7.3130 0.8877 0.8905 9 8 8.1923 1.5561 0.3797 10 7 7.6067 0.0479 1.9029 11 6 6.5437 -0.7018 2.5861 12 6 6.9067 -2.1943 2.5634 13 6 8.2987 -2.3842 3.1702 14 1 8.5488 -3.4450 3.1805 15 7 8.3081 -1.8674 4.5411 16 6 7.8912 -2.6623 5.5752 17 1 7.5550 -3.6700 5.3803 18 6 7.8996 -2.1726 6.8740 19 7 8.3088 -0.9444 7.1116 20 14 7.3302 -3.2566 8.2847 21 1 8.4879 -4.0125 8.8267 22 1 6.7470 -2.4094 9.3558 23 1 6.3030 -4.2098 7.7931 24 6 9.3302 -1.6253 2.3322 25 1 9.3063 -1.9922 1.3061 26 6 10.7261 -1.8423 2.9198 27 6 8.9954 -0.1304 2.3485 28 16 4.4857 1.1094 1.4027 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 6.2406 0.9837 -1.7180 35 1 6.4596 -0.3589 3.6173 36 1 5.5969 -0.5467 2.0688 37 1 6.9057 -2.5560 1.5351 38 1 6.1760 -2.7546 3.1468 39 1 8.6098 -0.9624 4.7161 40 1 8.3150 -0.6023 8.0193 41 1 10.7491 -1.4763 3.9462 42 1 10.9638 -2.9060 2.9080 43 1 11.4596 -1.2994 2.3239 44 1 9.6667 0.4017 1.6745 45 1 9.1071 0.2580 3.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036319610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:22 Heat of formation + Delta-G solvation = -32.705268 kcal Electronic energy + Delta-G solvation = -27716.312411 eV Core-core repulsion = 23860.737289 eV Total energy + Delta-G solvation = -3855.575121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65240 -40.71304 -39.14797 -38.69314 -35.95739 -34.58146 -33.08913 -32.57914 -30.95833 -29.82254 -27.73353 -27.12263 -26.46833 -25.36796 -24.93645 -23.14931 -22.67407 -20.49045 -19.89535 -19.42178 -19.24778 -18.00259 -17.58330 -17.52198 -16.83260 -16.55796 -16.31804 -16.19351 -15.90651 -15.72054 -15.49204 -15.19315 -14.91362 -14.82518 -14.37215 -14.23254 -13.69777 -13.65183 -13.27768 -13.09675 -12.99081 -12.85695 -12.72728 -12.71629 -12.47533 -12.37320 -12.11743 -12.05455 -11.96656 -11.59431 -11.40186 -11.17665 -10.91700 -10.88063 -10.73607 -10.43308 -10.06881 -9.73332 -8.91878 -7.87059 -5.13470 -0.91350 -0.05746 0.39432 1.28188 1.51192 1.52294 1.59570 1.67924 1.94308 2.61321 2.62315 3.21440 3.37067 3.46747 3.78489 3.80412 3.85332 3.96207 4.04784 4.12046 4.22893 4.25789 4.33383 4.34371 4.49056 4.54046 4.55982 4.60643 4.67257 4.80778 4.89671 4.90920 4.91161 5.00371 5.12313 5.16907 5.22472 5.27253 5.44579 5.57245 5.62567 6.05295 6.18373 6.34577 6.44620 6.83882 7.42586 8.17330 8.41629 9.36019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003572 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.931605 B = 7837.620956 C = 9595.419227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.135 3.865 4 C 0.035 3.965 5 N -0.477 5.477 6 C 0.111 3.889 7 C -0.305 4.305 8 C 0.594 3.406 9 O -0.563 6.563 10 N -0.591 5.591 11 C 0.112 3.888 12 C -0.140 4.140 13 C 0.173 3.827 14 H 0.052 0.948 15 N -0.724 5.724 16 C -0.227 4.227 17 H 0.075 0.925 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.962 3.038 21 H -0.294 1.294 22 H -0.301 1.301 23 H -0.270 1.270 24 C -0.099 4.099 25 H 0.087 0.913 26 C -0.131 4.131 27 C 0.125 3.875 28 S 0.243 5.757 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.374 0.626 40 H 0.247 0.753 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 3.103 -15.507 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.055 3.945 4 C -0.239 4.239 5 N -0.193 5.193 6 C -0.047 4.047 7 C -0.430 4.430 8 C 0.381 3.619 9 O -0.444 6.444 10 N -0.321 5.321 11 C -0.012 4.012 12 C -0.181 4.181 13 C 0.065 3.935 14 H 0.070 0.930 15 N -0.365 5.365 16 C -0.359 4.359 17 H 0.093 0.907 18 C -0.262 4.262 19 N -0.619 5.619 20 Si 0.792 3.208 21 H -0.222 1.222 22 H -0.228 1.228 23 H -0.195 1.195 24 C -0.119 4.119 25 H 0.106 0.894 26 C -0.189 4.189 27 C 0.003 3.997 28 S 0.500 5.500 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.213 0.787 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.900 3.160 -15.066 20.084 hybrid contribution 0.468 0.017 0.558 0.729 sum -12.431 3.176 -14.509 19.368 Atomic orbital electron populations 1.23021 0.77982 1.04305 1.01714 1.87926 1.22503 1.26706 1.95817 1.21054 0.82423 0.86363 1.04637 1.27644 1.02098 1.02050 0.92106 1.66224 1.04727 1.16295 1.32026 1.22228 0.91102 0.96268 0.95129 1.25680 0.98381 1.19911 0.98990 1.16995 0.86171 0.79379 0.79400 1.90789 1.48645 1.45668 1.59292 1.48043 1.09308 1.41975 1.32791 1.22065 0.89263 0.92763 0.97068 1.22475 1.00303 0.94440 1.00907 1.20427 0.92346 0.96557 0.84207 0.93029 1.42581 1.77794 1.14879 1.01265 1.19560 1.33340 0.95930 0.87086 0.90670 1.25350 1.03719 0.97619 0.99542 1.69797 1.55669 1.16802 1.19602 0.85310 0.77746 0.77918 0.79795 1.22157 1.22849 1.19508 1.21650 0.96215 0.93953 1.00039 0.89430 1.21595 0.94798 1.01986 1.00494 1.21638 0.81132 0.97302 0.99670 1.84252 0.94256 1.62135 1.09321 0.92316 0.88522 0.92104 0.88044 0.88441 0.78736 0.91644 0.89495 0.90886 0.91126 0.79233 0.94376 0.93997 0.92052 0.91507 0.89145 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.57 10.69 -148.98 -1.59 -9.16 16 3 C 0.13 2.09 6.51 71.24 0.46 2.55 16 4 C 0.04 0.77 7.02 88.46 0.62 1.39 16 5 N -0.48 -12.00 10.51 -190.30 -2.00 -14.00 16 6 C 0.11 2.85 11.30 84.23 0.95 3.80 16 7 C -0.31 -8.53 5.53 23.88 0.13 -8.40 16 8 C 0.59 19.55 7.57 86.45 0.65 20.20 16 9 O -0.56 -21.38 16.51 -4.30 -0.07 -21.46 16 10 N -0.59 -19.23 2.97 -822.75 -2.44 -21.67 16 11 C 0.11 3.56 5.69 86.51 0.49 4.05 16 12 C -0.14 -4.47 5.79 30.82 0.18 -4.29 16 13 C 0.17 6.19 2.53 45.02 0.11 6.30 16 14 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 15 N -0.72 -32.76 3.64 -322.81 -1.17 -33.93 16 16 C -0.23 -11.60 9.93 84.03 0.83 -10.76 16 17 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 19 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 20 Si 0.96 44.40 29.55 68.60 2.03 46.43 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C -0.10 -3.06 2.67 -10.71 -0.03 -3.09 16 25 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 26 C -0.13 -3.99 9.06 71.98 0.65 -3.33 16 27 C 0.12 4.15 5.41 86.37 0.47 4.62 16 28 S 0.24 5.65 19.98 -56.49 -1.13 4.52 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.20 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.07 2.47 7.74 -2.39 -0.02 2.45 16 36 H 0.09 2.46 3.94 -16.51 -0.07 2.39 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.37 18.50 5.92 -92.71 -0.55 17.95 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 2.96 7.02 -2.39 -0.02 2.94 16 45 H 0.06 2.19 6.64 -2.39 -0.02 2.17 16 Total: -1.00 -66.38 376.22 1.56 -64.82 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.41 Total: 29.44 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 7.25 Total: 11.22 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -5.33 Total: -125.83 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.66 Total: -30.61 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.13 Total: 4.52 kcal Total: -66.38 1.56 -64.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036319610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.120 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds