Wall clock time and date at job start Wed Apr 1 2020 00:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99902 * 2 1 4 4 C 1.50705 * 109.46876 * 179.97438 * 3 2 1 5 5 N 1.28653 * 124.71790 * 89.99933 * 4 3 2 6 6 C 1.33557 * 115.76541 * 179.97438 * 5 4 3 7 7 C 1.47266 * 123.14142 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00006 * 188.17505 * 7 6 5 9 9 N 1.34778 * 119.99878 * 8.17723 * 7 6 5 10 10 C 1.46921 * 120.62889 * 6.99991 * 9 7 6 11 11 C 1.53199 * 108.76077 * 126.40917 * 10 9 7 12 12 C 1.53047 * 109.31262 * 54.65801 * 11 10 9 13 13 H 1.08995 * 109.45927 * 58.62535 * 12 11 10 14 14 N 1.46498 * 109.45904 * 178.60334 * 12 11 10 15 15 C 1.36937 * 119.99553 * 275.02079 * 14 12 11 16 16 H 1.08002 * 120.00105 * 359.73011 * 15 14 12 17 17 C 1.38807 * 120.00018 * 180.02562 * 15 14 12 18 18 N 1.31624 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47218 * 90.00083 * 19 17 15 21 21 H 1.48500 * 109.47351 * 210.00200 * 19 17 15 22 22 H 1.48497 * 109.47271 * 330.00289 * 19 17 15 23 23 C 1.53046 * 109.52235 * 298.61133 * 12 11 10 24 24 C 1.46922 * 120.62586 * 187.02928 * 9 7 6 25 25 H 1.09005 * 109.58989 * 113.79976 * 24 9 7 26 26 C 1.52995 * 109.70895 * 353.43700 * 24 9 7 27 27 C 1.35215 * 113.71580 * 0.26512 * 6 5 4 28 28 S 1.70764 * 124.72006 * 269.95707 * 4 3 2 29 29 H 1.09002 * 109.46925 * 299.99911 * 1 2 3 30 30 H 1.08996 * 109.47166 * 60.00360 * 1 2 3 31 31 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47482 * 60.00286 * 3 2 1 33 33 H 1.08997 * 109.47015 * 299.99798 * 3 2 1 34 34 H 1.09002 * 109.58677 * 246.20131 * 10 9 7 35 35 H 1.08993 * 109.58874 * 6.48982 * 10 9 7 36 36 H 1.08990 * 109.51094 * 294.69474 * 11 10 9 37 37 H 1.09001 * 109.48347 * 174.59783 * 11 10 9 38 38 H 0.96996 * 120.00541 * 95.02631 * 14 12 11 39 39 H 0.96992 * 120.00454 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49478 * 181.32513 * 23 12 11 41 41 H 1.08995 * 109.49946 * 301.38784 * 23 12 11 42 42 H 1.08998 * 109.47349 * 303.20735 * 26 24 9 43 43 H 1.09003 * 109.46740 * 63.20468 * 26 24 9 44 44 H 1.08998 * 109.47220 * 183.19554 * 26 24 9 45 45 H 1.08001 * 125.58564 * 179.73731 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2434 1.1284 -1.0565 6 6 5.5585 1.0247 -0.8481 7 6 6.5431 0.9472 -1.9405 8 8 7.7090 0.7050 -1.6924 9 7 6.1524 1.1445 -3.2152 10 6 4.7848 1.5873 -3.5188 11 6 4.8561 2.8418 -4.3953 12 6 5.7104 2.5482 -5.6308 13 1 5.2746 1.7164 -6.1841 14 7 5.7534 3.7355 -6.4878 15 6 4.7527 3.9618 -7.3947 16 1 3.9340 3.2626 -7.4812 17 6 4.7936 5.0865 -8.2072 18 7 5.7945 5.9353 -8.1062 19 14 3.4289 5.3948 -9.4449 20 1 2.3555 6.1994 -8.8080 21 1 3.9758 6.1339 -10.6110 22 1 2.8704 4.0962 -9.8997 23 6 7.1311 2.1822 -5.1950 24 6 7.0858 0.9204 -4.3274 25 1 6.7439 0.0768 -4.9272 26 6 8.4827 0.6258 -3.7773 27 6 5.9011 0.9925 0.4595 28 16 4.4816 1.1109 1.4046 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 4.2552 0.7981 -4.0526 35 1 4.2604 1.8165 -2.5912 36 1 5.3050 3.6571 -3.8280 37 1 3.8509 3.1251 -4.7071 38 1 6.4906 4.3613 -6.4129 39 1 5.8229 6.7214 -8.6736 40 1 7.7452 1.9961 -6.0761 41 1 7.5586 3.0040 -4.6206 42 1 8.8019 1.4482 -3.1371 43 1 8.4578 -0.2971 -3.1979 44 1 9.1835 0.5163 -4.6049 45 1 6.9069 0.9083 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044880366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:17 Heat of formation + Delta-G solvation = 8.851865 kcal Electronic energy + Delta-G solvation = -27666.277643 eV Core-core repulsion = 23812.504574 eV Total energy + Delta-G solvation = -3853.773069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01732 -39.38164 -38.11658 -37.25644 -34.45666 -32.69813 -31.88165 -31.65468 -29.21449 -28.56129 -26.95386 -26.48886 -25.26067 -24.12855 -22.85179 -21.82476 -20.88464 -20.03311 -19.49982 -18.11424 -17.06528 -17.01370 -16.48939 -16.17351 -16.03133 -15.63300 -15.35845 -14.79363 -14.53363 -14.25549 -13.94449 -13.70189 -13.61382 -13.22383 -13.08701 -12.94336 -12.64197 -12.47460 -12.23108 -12.10018 -11.94526 -11.84493 -11.50488 -11.34542 -10.88380 -10.81594 -10.67227 -10.46892 -10.21189 -10.20448 -9.97293 -9.80619 -9.70606 -9.49264 -9.23123 -9.06025 -8.78864 -8.28906 -6.92568 -5.74383 -3.03021 0.20391 0.90196 1.30347 1.71048 3.08535 3.19387 3.43747 3.44467 3.49181 3.50976 3.89352 4.44383 4.59969 4.68222 4.84940 4.90345 4.95208 5.01232 5.08057 5.19928 5.25785 5.30687 5.43169 5.46797 5.56937 5.67146 5.71291 5.83671 5.98053 6.09769 6.18078 6.28381 6.45059 6.49006 6.55253 6.59244 6.60437 6.63530 6.83887 7.02376 7.14401 7.16570 7.62774 7.71624 8.26562 8.44130 9.55076 10.13622 10.48680 11.48377 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003223 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.589835 B = 8685.647377 C =10605.141011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.012 3.988 5 N -0.413 5.413 6 C 0.016 3.984 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.580 5.580 10 C 0.077 3.923 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.046 0.954 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.133 4.133 24 C 0.145 3.855 25 H 0.072 0.928 26 C -0.135 4.135 27 C -0.223 4.223 28 S 0.231 5.769 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.133 0.867 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -12.004 22.431 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.266 4.266 5 N -0.130 5.130 6 C -0.119 4.119 7 C 0.374 3.626 8 O -0.415 6.415 9 N -0.311 5.311 10 C -0.046 4.046 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.064 0.936 14 N -0.365 5.365 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.172 4.172 24 C 0.042 3.958 25 H 0.090 0.910 26 C -0.192 4.192 27 C -0.365 4.365 28 S 0.488 5.512 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.290 -12.261 22.933 26.754 hybrid contribution -0.167 0.727 -1.600 1.766 sum -6.456 -11.533 21.332 25.095 Atomic orbital electron populations 1.22816 0.79835 1.03355 1.00495 1.87952 1.20414 1.26211 1.95556 1.20792 0.84192 0.86176 1.02880 1.26841 1.00965 1.06553 0.92248 1.66948 1.03430 1.13297 1.29338 1.20663 0.89887 1.07499 0.93863 1.17133 0.86101 0.77630 0.81716 1.90855 1.16637 1.50662 1.83346 1.48024 1.14072 1.64338 1.04647 1.22882 0.81424 0.96767 1.03516 1.22646 1.02281 0.96113 0.97856 1.20208 0.92024 0.90921 0.90133 0.93550 1.42435 1.27672 1.24385 1.41981 1.19246 1.01061 1.05108 1.11365 0.91204 1.24737 0.98289 0.97706 1.00301 1.69664 1.31686 1.14211 1.42640 0.86209 0.81398 0.77716 0.80994 1.21798 1.21829 1.20774 1.22281 0.99294 0.96575 0.99082 1.21376 0.89870 0.97847 0.86713 0.90996 1.22202 0.93885 1.03673 0.99455 1.26653 1.06182 1.06881 0.96794 1.82758 0.94742 1.62831 1.10867 0.93718 0.93317 0.89132 0.90721 0.89550 0.92165 0.85006 0.92672 0.90895 0.78327 0.93561 0.90642 0.91818 0.91037 0.91520 0.93718 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.52 10.69 -35.23 -0.38 -3.90 16 3 C 0.14 1.11 6.51 36.01 0.23 1.34 16 4 C 0.01 0.12 6.97 -13.61 -0.09 0.03 16 5 N -0.41 -5.35 6.78 -8.51 -0.06 -5.41 16 6 C 0.02 0.22 6.48 -84.52 -0.55 -0.33 16 7 C 0.59 9.41 7.57 -12.59 -0.10 9.31 16 8 O -0.54 -9.20 12.15 5.25 0.06 -9.13 16 9 N -0.58 -9.30 2.97 -166.54 -0.49 -9.80 16 10 C 0.08 1.22 6.01 -3.71 -0.02 1.19 16 11 C -0.15 -2.73 5.66 -26.60 -0.15 -2.89 16 12 C 0.18 3.61 2.73 -67.88 -0.19 3.42 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 N -0.72 -18.40 5.12 -53.38 -0.27 -18.68 16 15 C -0.24 -6.59 9.93 -15.06 -0.15 -6.73 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.13 -2.38 4.84 -26.61 -0.13 -2.51 16 24 C 0.14 2.30 3.49 -67.60 -0.24 2.06 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 C -0.13 -2.05 7.60 37.15 0.28 -1.77 16 27 C -0.22 -2.40 10.62 29.66 0.32 -2.08 16 28 S 0.23 1.84 22.92 -107.50 -2.46 -0.62 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.13 2.00 4.03 -74.89 -0.30 1.70 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.38 10.43 7.80 -40.82 -0.32 10.11 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.19 6.76 -51.93 -0.35 0.84 16 43 H 0.07 1.04 6.76 -51.93 -0.35 0.69 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.19 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -33.19 374.77 -8.80 -41.99 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.78 Total: 8.35 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 0.24 Total: 1.84 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.10 Total: -61.60 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.31 Total: -13.03 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.46 Total: -0.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.19 -8.80 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044880366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.841 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds