Wall clock time and date at job start Wed Apr 1 2020 00:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00210 * 2 1 4 4 C 1.50702 * 109.47209 * 180.02562 * 3 2 1 5 5 N 1.29418 * 124.80737 * 89.96088 * 4 3 2 6 6 C 1.30941 * 117.36741 * 180.02562 * 5 4 3 7 7 C 1.35661 * 114.19331 * 359.97438 * 6 5 4 8 8 C 1.46679 * 126.13404 * 180.02562 * 7 6 5 9 9 O 1.21681 * 120.00082 * 312.82709 * 8 7 6 10 10 N 1.34776 * 119.99925 * 132.82790 * 8 7 6 11 11 C 1.46931 * 120.63372 * 4.24279 * 10 8 7 12 12 C 1.53184 * 108.77628 * 233.58690 * 11 10 8 13 13 C 1.53035 * 109.31577 * 305.36471 * 12 11 10 14 14 H 1.09006 * 109.45988 * 301.34358 * 13 12 11 15 15 N 1.46497 * 109.46224 * 181.37400 * 13 12 11 16 16 C 1.36933 * 120.00031 * 84.99872 * 15 13 12 17 17 H 1.07997 * 120.00519 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00128 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99887 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00309 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46917 * 89.99551 * 20 18 16 22 22 H 1.48500 * 109.47009 * 209.99910 * 20 18 16 23 23 H 1.48493 * 109.46861 * 329.99740 * 20 18 16 24 24 C 1.53038 * 109.53956 * 61.36505 * 13 12 11 25 25 C 1.46931 * 120.63110 * 183.96387 * 10 8 7 26 26 H 1.08997 * 109.58662 * 246.20414 * 25 10 8 27 27 C 1.52998 * 109.58344 * 6.62972 * 25 10 8 28 28 S 1.70958 * 124.80297 * 270.00073 * 4 3 2 29 29 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46915 * 299.99747 * 1 2 3 31 31 H 1.08996 * 109.47068 * 59.99632 * 1 2 3 32 32 H 1.09006 * 109.47073 * 60.00343 * 3 2 1 33 33 H 1.08997 * 109.47437 * 300.00002 * 3 2 1 34 34 H 1.08003 * 122.90477 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.58255 * 353.37783 * 11 10 8 36 36 H 1.09002 * 109.58235 * 113.65656 * 11 10 8 37 37 H 1.09004 * 109.49839 * 65.32083 * 12 11 10 38 38 H 1.09000 * 109.49617 * 185.37775 * 12 11 10 39 39 H 0.97001 * 119.99993 * 264.99975 * 15 13 12 40 40 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.49808 * 58.58677 * 24 13 12 42 42 H 1.09002 * 109.50047 * 178.65279 * 24 13 12 43 43 H 1.08996 * 109.47478 * 49.88040 * 27 25 10 44 44 H 1.08998 * 109.47191 * 169.88193 * 27 25 10 45 45 H 1.09001 * 109.46975 * 289.88085 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2485 1.1275 -1.0636 6 6 5.5429 1.0246 -0.8946 7 6 5.9333 0.9944 0.4043 8 6 7.3129 0.8854 0.8905 9 8 8.0607 0.0506 0.4167 10 7 7.7521 1.7099 1.8619 11 6 6.8364 2.6598 2.5084 12 6 7.4400 4.0649 2.4193 13 6 8.8505 4.0486 3.0127 14 1 8.8044 3.7151 4.0495 15 7 9.4183 5.3980 2.9590 16 6 9.1497 6.2941 3.9589 17 1 8.5197 6.0061 4.7874 18 6 9.6873 7.5730 3.9077 19 7 10.4557 7.9239 2.8983 20 14 9.3216 8.7953 5.2721 21 1 10.3514 8.6735 6.3350 22 1 9.3406 10.1737 4.7199 23 1 7.9819 8.5104 5.8458 24 6 9.7333 3.0918 2.2081 25 6 9.1545 1.6717 2.2989 26 1 9.2069 1.3178 3.3284 27 6 9.9495 0.7326 1.3895 28 16 4.4858 1.1091 1.4027 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 6.2394 0.9685 -1.7180 35 1 5.8730 2.6429 1.9990 36 1 6.7018 2.3833 3.5542 37 1 7.4881 4.3747 1.3753 38 1 6.8178 4.7642 2.9778 39 1 9.9845 5.6566 2.2151 40 1 10.8311 8.8176 2.8622 41 1 9.7598 3.4107 1.1661 42 1 10.7438 3.0988 2.6166 43 1 9.7551 0.9853 0.3472 44 1 11.0141 0.8409 1.5971 45 1 9.6458 -0.2974 1.5764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044888013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:08 Heat of formation + Delta-G solvation = -21.636193 kcal Electronic energy + Delta-G solvation = -27267.622973 eV Core-core repulsion = 23412.527843 eV Total energy + Delta-G solvation = -3855.095130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81275 -40.73091 -38.88567 -38.62980 -36.22275 -34.34876 -33.72622 -32.36739 -31.07377 -29.53570 -28.32256 -27.11836 -26.07293 -25.21058 -24.56401 -23.75438 -22.06985 -21.33356 -20.03894 -19.47471 -19.06018 -17.88214 -17.64423 -17.33613 -16.73898 -16.66261 -16.54977 -16.39824 -15.71477 -15.60913 -15.48732 -15.09470 -15.02948 -14.73347 -14.51499 -14.10151 -13.70526 -13.54406 -13.41193 -13.24490 -13.10534 -12.89242 -12.80554 -12.66042 -12.63373 -12.38500 -12.16816 -12.05713 -12.00549 -11.72954 -11.41412 -11.00689 -10.93418 -10.72094 -10.60593 -10.26540 -10.05480 -9.71484 -9.00158 -7.91924 -5.20831 -0.87421 -0.05873 0.39327 1.30606 1.49678 1.50812 1.58945 1.64870 1.96289 2.57873 2.63075 3.23049 3.37828 3.41475 3.70428 3.78168 3.80638 3.96251 4.03526 4.14515 4.20106 4.23154 4.29237 4.35752 4.51165 4.53964 4.56995 4.59915 4.67166 4.69741 4.80369 4.89475 4.90148 4.96593 5.03918 5.11879 5.22771 5.39171 5.47374 5.54807 5.62643 6.04162 6.20003 6.29447 6.47757 6.91511 7.35668 8.10937 8.33877 9.31691 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002872 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.328944 B = 9745.538752 C =11330.285218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.134 3.866 4 C 0.029 3.971 5 N -0.482 5.482 6 C 0.099 3.901 7 C -0.304 4.304 8 C 0.594 3.406 9 O -0.544 6.544 10 N -0.593 5.593 11 C 0.104 3.896 12 C -0.138 4.138 13 C 0.174 3.826 14 H 0.055 0.945 15 N -0.737 5.737 16 C -0.233 4.233 17 H 0.081 0.919 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.970 3.030 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.265 1.265 24 C -0.124 4.124 25 C 0.153 3.847 26 H 0.095 0.905 27 C -0.128 4.128 28 S 0.261 5.739 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.188 0.812 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.008 -16.859 -2.305 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.055 3.945 4 C -0.245 4.245 5 N -0.197 5.197 6 C -0.058 4.058 7 C -0.429 4.429 8 C 0.380 3.620 9 O -0.424 6.424 10 N -0.326 5.326 11 C -0.019 4.019 12 C -0.179 4.179 13 C 0.065 3.935 14 H 0.073 0.927 15 N -0.376 5.376 16 C -0.365 4.365 17 H 0.099 0.901 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.190 1.190 24 C -0.163 4.163 25 C 0.051 3.949 26 H 0.113 0.887 27 C -0.185 4.185 28 S 0.518 5.482 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.205 0.795 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.120 -17.351 -1.766 25.880 hybrid contribution 0.881 1.395 -0.813 1.839 sum -18.239 -15.956 -2.579 24.371 Atomic orbital electron populations 1.23023 0.77972 1.04321 1.01721 1.87910 1.22509 1.26777 1.95825 1.21055 0.82562 0.86271 1.04648 1.27569 1.02084 1.02597 0.92276 1.66173 1.04866 1.16261 1.32448 1.22153 0.91061 0.97112 0.95471 1.25905 0.99209 1.18800 0.98959 1.16977 0.84804 0.81021 0.79190 1.90884 1.55541 1.36904 1.59041 1.48172 1.11309 1.36567 1.36514 1.22200 0.92427 0.88003 0.99309 1.22435 0.99015 0.95486 1.00919 1.20409 0.91304 0.84405 0.97340 0.92732 1.42654 1.58865 1.09868 1.26226 1.19638 1.23541 0.92571 1.00733 0.90067 1.25557 1.01099 0.99827 1.00596 1.69826 1.39217 1.19816 1.33484 0.85181 0.78190 0.78078 0.78588 1.21674 1.22778 1.18981 1.22248 0.99850 0.93960 1.00273 1.21454 0.78773 0.95105 0.99581 0.88716 1.22065 0.98449 0.98949 0.99018 1.83725 0.93331 1.62185 1.08940 0.88402 0.91869 0.92656 0.87655 0.88971 0.79543 0.89237 0.88309 0.93846 0.91006 0.79852 0.94241 0.93083 0.90554 0.92974 0.92083 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.77 10.69 -148.98 -1.59 -8.37 16 3 C 0.13 1.87 6.51 71.24 0.46 2.34 16 4 C 0.03 0.58 7.02 88.46 0.62 1.20 16 5 N -0.48 -11.89 10.51 -190.30 -2.00 -13.89 16 6 C 0.10 2.50 11.31 84.23 0.95 3.45 16 7 C -0.30 -7.54 5.44 23.88 0.13 -7.41 16 8 C 0.59 16.74 7.38 86.45 0.64 17.38 16 9 O -0.54 -17.80 12.63 -4.29 -0.05 -17.86 16 10 N -0.59 -15.61 2.97 -798.89 -2.37 -17.98 16 11 C 0.10 2.46 5.95 86.36 0.51 2.98 16 12 C -0.14 -4.33 5.66 30.67 0.17 -4.16 16 13 C 0.17 6.27 2.73 45.02 0.12 6.39 16 14 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 15 N -0.74 -35.45 5.12 -322.82 -1.65 -37.10 16 16 C -0.23 -12.28 9.93 84.04 0.83 -11.44 16 17 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 20 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C -0.12 -3.94 4.85 30.82 0.15 -3.79 16 25 C 0.15 4.08 3.51 45.12 0.16 4.24 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 27 C -0.13 -3.44 7.63 71.98 0.55 -2.89 16 28 S 0.26 4.79 20.18 -56.49 -1.14 3.65 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.35 16 32 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.09 1.89 4.10 -14.50 -0.06 1.83 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.37 19.65 7.80 -92.71 -0.72 18.92 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 1.60 6.57 -2.39 -0.02 1.58 16 44 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 45 H 0.07 1.83 6.90 -2.39 -0.02 1.81 16 Total: -1.00 -69.80 375.79 0.76 -69.04 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.24 Total: 28.38 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 7.02 Total: 5.81 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.74 Total: -127.48 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.65 Total: -26.22 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.14 Total: 3.65 kcal Total: -69.80 0.76 -69.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044888013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds