Wall clock time and date at job start Wed Apr 1 2020 00:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00195 * 2 1 4 4 C 1.50700 * 109.47354 * 180.02562 * 3 2 1 5 5 N 1.30948 * 122.90416 * 269.71418 * 4 3 2 6 6 C 1.29426 * 117.36760 * 179.75216 * 5 4 3 7 7 S 1.70958 * 110.38696 * 0.48933 * 6 5 4 8 8 C 1.35661 * 122.90795 * 89.99393 * 4 3 2 9 9 C 1.46681 * 126.13049 * 0.02833 * 8 4 3 10 10 O 1.21686 * 119.99947 * 359.97438 * 9 8 4 11 11 N 1.34772 * 120.00149 * 179.97438 * 9 8 4 12 12 C 1.46506 * 119.99945 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.49881 * 35.00175 * 12 11 9 14 14 C 1.53040 * 109.49535 * 155.06779 * 12 11 9 15 15 C 1.53103 * 109.50452 * 58.62303 * 14 12 11 16 16 C 1.53193 * 109.33361 * 61.33835 * 15 14 12 17 17 H 1.09003 * 109.58235 * 65.15145 * 16 15 14 18 18 C 1.52998 * 109.58693 * 185.57942 * 16 15 14 19 19 N 1.46928 * 108.77463 * 305.36973 * 16 15 14 20 20 C 1.36935 * 120.62693 * 233.62360 * 19 16 15 21 21 H 1.08003 * 119.99835 * 29.01264 * 20 19 16 22 22 C 1.38808 * 119.99893 * 209.00299 * 20 19 16 23 23 N 1.31621 * 120.00074 * 15.02680 * 22 20 19 24 24 Si 1.86805 * 120.00156 * 195.02177 * 22 20 19 25 25 H 1.48502 * 109.46830 * 59.99964 * 24 22 20 26 26 H 1.48491 * 109.47240 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46942 * 300.00724 * 24 22 20 28 28 C 1.46922 * 118.73916 * 53.60367 * 19 16 15 29 29 H 1.09000 * 109.46864 * 300.00144 * 1 2 3 30 30 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47354 * 59.99801 * 1 2 3 32 32 H 1.09000 * 109.47315 * 299.99799 * 3 2 1 33 33 H 1.08993 * 109.47218 * 60.00344 * 3 2 1 34 34 H 1.08000 * 124.80981 * 180.22554 * 6 5 4 35 35 H 0.97000 * 120.00423 * 0.02562 * 11 9 8 36 36 H 1.09006 * 109.45984 * 178.61143 * 14 12 11 37 37 H 1.09001 * 109.46268 * 298.56645 * 14 12 11 38 38 H 1.09006 * 109.48760 * 301.38581 * 15 14 12 39 39 H 1.09003 * 109.51561 * 181.31462 * 15 14 12 40 40 H 1.09003 * 109.46779 * 179.29151 * 18 16 15 41 41 H 1.09000 * 109.47011 * 299.28816 * 18 16 15 42 42 H 1.08995 * 109.47377 * 59.29296 * 18 16 15 43 43 H 0.97003 * 119.99952 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.58429 * 186.60336 * 28 19 16 45 45 H 1.09009 * 109.70334 * 66.24967 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2225 1.1355 1.0985 6 6 5.5062 1.0283 0.9731 7 16 5.9424 0.9939 -0.6796 8 6 4.2468 1.1283 -1.1399 9 6 3.7232 1.1704 -2.5094 10 8 2.5251 1.2654 -2.7000 11 7 4.5689 1.1039 -3.5566 12 6 4.0458 1.1454 -4.9244 13 1 3.1789 1.8050 -4.9626 14 6 5.1289 1.6703 -5.8697 15 6 6.3592 0.7623 -5.7918 16 6 5.9741 -0.6527 -6.2348 17 1 5.6924 -0.6420 -7.2877 18 6 7.1609 -1.5958 -6.0278 19 7 4.8358 -1.1083 -5.4251 20 6 4.8937 -2.2961 -4.7461 21 1 5.8444 -2.6749 -4.4008 22 6 3.7306 -3.0130 -4.5014 23 7 2.6280 -2.7229 -5.1591 24 14 3.7301 -4.3896 -3.2386 25 1 4.1003 -3.8417 -1.9089 26 1 2.3757 -4.9941 -3.1658 27 1 4.7142 -5.4277 -3.6376 28 6 3.6345 -0.2652 -5.3576 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8463 0.8899 34 1 6.2036 0.9729 1.7959 35 1 5.5239 1.0279 -3.4047 36 1 4.7473 1.6776 -6.8908 37 1 5.4054 2.6836 -5.5784 38 1 6.7266 0.7349 -4.7659 39 1 7.1394 1.1491 -6.4475 40 1 6.8807 -2.6044 -6.3317 41 1 8.0041 -1.2561 -6.6292 42 1 7.4433 -1.5989 -4.9751 43 1 1.8153 -3.2242 -4.9883 44 1 2.9363 -0.6814 -4.6313 45 1 3.1598 -0.2225 -6.3380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071882932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:23 Heat of formation + Delta-G solvation = -5.507263 kcal Electronic energy + Delta-G solvation = -29018.630167 eV Core-core repulsion = 25164.234439 eV Total energy + Delta-G solvation = -3854.395727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.29090 -39.16703 -37.49345 -37.24900 -34.17058 -32.74190 -31.52032 -30.62440 -29.86938 -27.94435 -26.29015 -25.87136 -24.93091 -24.45322 -22.23327 -22.02402 -20.46192 -19.36995 -18.88019 -18.42656 -16.80002 -16.37867 -16.30854 -15.50928 -15.34732 -15.20929 -14.87020 -14.74238 -14.33978 -14.05380 -13.84472 -13.67712 -13.45565 -13.16678 -12.89795 -12.77219 -12.49606 -12.13834 -11.92511 -11.42432 -11.25118 -11.17349 -11.12051 -10.94900 -10.89045 -10.65777 -10.38522 -10.34116 -9.97950 -9.93164 -9.69661 -9.52137 -9.47196 -9.46013 -9.20814 -8.97101 -8.43229 -8.40971 -6.58526 -5.71814 -3.15927 0.29336 1.20422 1.57548 2.44773 3.39401 3.42478 3.49749 3.51891 3.65761 3.98711 4.43836 4.54196 4.98414 5.03886 5.20083 5.30182 5.35339 5.42414 5.44697 5.49685 5.56641 5.59597 5.65445 5.77026 5.90331 5.98462 6.06112 6.08493 6.14028 6.30586 6.33914 6.41969 6.48983 6.57952 6.65002 6.84758 7.03960 7.10384 7.34545 7.36549 7.57674 7.70775 7.85952 7.96777 8.51754 8.61273 9.26454 9.90936 10.46141 11.36066 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005489 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.611823 B = 5099.459977 C = 6030.098845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.376 6.376 3 C 0.132 3.868 4 C 0.125 3.875 5 N -0.462 5.462 6 C 0.020 3.980 7 S 0.172 5.828 8 C -0.249 4.249 9 C 0.593 3.407 10 O -0.522 6.522 11 N -0.691 5.691 12 C 0.118 3.882 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.136 4.136 19 N -0.582 5.582 20 C -0.253 4.253 21 H 0.067 0.933 22 C 0.009 3.991 23 N -0.898 5.898 24 Si 0.895 3.105 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.161 3.839 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.205 0.795 35 H 0.393 0.607 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.051 0.949 43 H 0.254 0.746 44 H 0.099 0.901 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 11.474 7.089 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.294 6.294 3 C 0.053 3.947 4 C -0.012 4.012 5 N -0.176 5.176 6 C -0.275 4.275 7 S 0.427 5.573 8 C -0.373 4.373 9 C 0.377 3.623 10 O -0.400 6.400 11 N -0.341 5.341 12 C 0.013 3.987 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.171 4.171 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.190 4.190 23 N -0.542 5.542 24 Si 0.725 3.275 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.034 3.966 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.008 11.208 6.950 14.492 hybrid contribution -0.534 -0.688 0.919 1.266 sum 5.473 10.520 7.870 14.232 Atomic orbital electron populations 1.22700 0.80672 1.02784 0.99786 1.87947 1.19808 1.26265 1.95414 1.20973 0.85200 0.86358 1.02171 1.20193 0.97166 0.98584 0.85300 1.65990 1.04957 1.15411 1.31258 1.28589 0.95263 1.03250 1.00442 1.83923 1.05907 1.64279 1.03146 1.25807 0.96285 1.15455 0.99801 1.16529 0.86316 0.77331 0.82160 1.90764 1.14242 1.50399 1.84617 1.45764 1.09439 1.72848 1.06025 1.21873 0.95945 1.01519 0.79364 0.90331 1.21712 0.96366 0.97859 0.99770 1.22095 0.96454 0.97943 1.00587 1.20462 0.89145 0.90806 0.93755 0.95706 1.21793 0.96285 1.00522 1.00708 1.44025 1.12468 1.20258 1.53751 1.19007 0.93568 0.97168 1.28475 0.91527 1.25022 0.97084 0.97743 0.99139 1.69957 1.01026 1.42316 1.40853 0.86497 0.76748 0.82143 0.82150 1.21042 1.21631 1.21043 1.21207 0.89914 0.85597 0.99883 0.94498 0.89676 0.93487 0.88918 0.92304 0.77843 0.77221 0.90871 0.92978 0.92882 0.92728 0.91992 0.94432 0.92990 0.93622 0.88264 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.01 101.05 1.11 1.65 16 2 O -0.38 -7.13 10.69 -35.23 -0.38 -7.51 16 3 C 0.13 2.22 5.75 36.01 0.21 2.43 16 4 C 0.13 2.17 6.42 -83.89 -0.54 1.63 16 5 N -0.46 -7.19 10.50 -11.53 -0.12 -7.31 16 6 C 0.02 0.24 12.22 51.75 0.63 0.88 16 7 S 0.17 2.20 22.35 -107.50 -2.40 -0.20 16 8 C -0.25 -4.30 6.48 -37.10 -0.24 -4.54 16 9 C 0.59 11.60 7.75 -12.85 -0.10 11.50 16 10 O -0.52 -11.52 13.93 5.20 0.07 -11.45 16 11 N -0.69 -12.51 4.91 -55.00 -0.27 -12.78 16 12 C 0.12 2.22 2.81 -67.81 -0.19 2.03 16 13 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.12 -1.82 5.59 -26.66 -0.15 -1.97 16 15 C -0.13 -2.04 5.21 -26.58 -0.14 -2.18 16 16 C 0.17 3.18 3.50 -67.60 -0.24 2.95 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 19 N -0.58 -13.66 2.91 -164.78 -0.48 -14.14 16 20 C -0.25 -6.66 8.60 -15.06 -0.13 -6.79 16 21 H 0.07 1.72 6.21 -52.48 -0.33 1.39 16 22 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 23 N -0.90 -26.42 11.14 55.49 0.62 -25.81 16 24 Si 0.89 22.61 29.58 -169.99 -5.03 17.59 16 25 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.16 3.78 4.89 -3.72 -0.02 3.76 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.61 6.01 -51.93 -0.31 1.30 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.39 6.45 5.95 -40.82 -0.24 6.21 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.93 7.44 -51.93 -0.39 0.54 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 2.79 6.06 -51.93 -0.31 2.47 16 45 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -33.13 371.50 -8.46 -41.59 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.49 Total: 5.01 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 0.42 Total: 9.42 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.25 Total: -60.04 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.30 Total: -18.96 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.59 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.40 Total: -0.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.13 -8.46 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071882932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.083 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds