Wall clock time and date at job start Wed Apr 1 2020 00:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00032 * 2 1 4 4 C 1.50695 * 109.47494 * 179.97438 * 3 2 1 5 5 N 1.28653 * 124.71820 * 89.99484 * 4 3 2 6 6 C 1.33559 * 115.76577 * 180.02562 * 5 4 3 7 7 C 1.47271 * 123.14114 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00004 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99905 * 0.02965 * 7 6 5 10 10 C 1.46499 * 120.00018 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.49827 * 35.05032 * 10 9 7 12 12 C 1.53104 * 109.51859 * 155.12526 * 10 9 7 13 13 C 1.53040 * 109.50409 * 58.62407 * 12 10 9 14 14 C 1.53192 * 109.33834 * 61.35162 * 13 12 10 15 15 H 1.09000 * 109.58613 * 65.13444 * 14 13 12 16 16 C 1.53003 * 109.58622 * 185.56013 * 14 13 12 17 17 N 1.46930 * 108.77613 * 305.34804 * 14 13 12 18 18 C 1.36934 * 120.62925 * 233.59084 * 17 14 13 19 19 H 1.07997 * 120.00083 * 29.05171 * 18 17 14 20 20 C 1.38818 * 120.00008 * 209.05389 * 18 17 14 21 21 N 1.31620 * 119.99342 * 15.05203 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 195.05059 * 20 18 17 23 23 H 1.48499 * 109.47304 * 60.00127 * 22 20 18 24 24 H 1.48506 * 109.46600 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47518 * 299.99835 * 22 20 18 26 26 C 1.46918 * 118.73744 * 53.60536 * 17 14 13 27 27 C 1.35213 * 113.71778 * 0.24601 * 6 5 4 28 28 S 1.70775 * 124.72381 * 270.00546 * 4 3 2 29 29 H 1.09008 * 109.46999 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47270 * 299.99566 * 1 2 3 31 31 H 1.08999 * 109.47549 * 60.00122 * 1 2 3 32 32 H 1.09009 * 109.47225 * 60.00218 * 3 2 1 33 33 H 1.09003 * 109.47629 * 300.00233 * 3 2 1 34 34 H 0.97000 * 120.00016 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.50297 * 298.59991 * 12 10 9 36 36 H 1.08999 * 109.44846 * 178.62155 * 12 10 9 37 37 H 1.08996 * 109.49798 * 301.38331 * 13 12 10 38 38 H 1.09003 * 109.49853 * 181.31698 * 13 12 10 39 39 H 1.08998 * 109.47080 * 59.99740 * 16 14 13 40 40 H 1.08997 * 109.47262 * 179.97438 * 16 14 13 41 41 H 1.08999 * 109.46886 * 300.00316 * 16 14 13 42 42 H 0.97004 * 119.99493 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.58686 * 66.18205 * 26 17 14 44 44 H 1.09005 * 109.58821 * 186.45892 * 26 17 14 45 45 H 1.07997 * 125.58614 * 179.74866 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2433 1.1284 -1.0565 6 6 5.5584 1.0238 -0.8481 7 6 6.5429 0.9450 -1.9406 8 8 7.7284 0.8503 -1.6852 9 7 6.1304 0.9779 -3.2232 10 6 7.1097 0.8989 -4.3099 11 1 7.9275 0.2412 -4.0155 12 6 6.4350 0.3439 -5.5672 13 6 5.2663 1.2496 -5.9620 14 6 5.7953 2.6526 -6.2760 15 1 6.4369 2.6127 -7.1563 16 6 4.6204 3.5974 -6.5364 17 7 6.5693 3.1349 -5.1239 18 6 6.2801 4.3418 -4.5451 19 1 5.2718 4.7274 -4.5756 20 6 7.2829 5.0695 -3.9192 21 7 8.5460 4.7642 -4.1287 22 14 6.8398 6.4817 -2.7797 23 1 6.0130 5.9711 -1.6568 24 1 8.0821 7.0918 -2.2414 25 1 6.0721 7.5046 -3.5344 26 6 7.6596 2.2980 -4.6051 27 6 5.9010 0.9912 0.4595 28 16 4.4816 1.1098 1.4047 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 5.1850 1.0531 -3.4268 35 1 6.0639 -0.6614 -5.3675 36 1 7.1584 0.3086 -6.3817 37 1 4.5546 1.3051 -5.1383 38 1 4.7715 0.8417 -6.8435 39 1 3.9849 3.6394 -5.6518 40 1 4.9988 4.5950 -6.7591 41 1 4.0403 3.2310 -7.3833 42 1 9.2467 5.2725 -3.6910 43 1 8.4532 2.2291 -5.3491 44 1 8.0545 2.7384 -3.6895 45 1 6.9067 0.9064 0.8437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072113500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:52 Heat of formation + Delta-G solvation = -11.245577 kcal Electronic energy + Delta-G solvation = -28383.391660 eV Core-core repulsion = 24528.747101 eV Total energy + Delta-G solvation = -3854.644559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.31055 -38.89862 -38.00433 -37.22985 -34.06227 -32.67430 -31.68079 -30.56703 -29.81110 -28.27848 -26.48649 -26.14803 -25.13265 -24.39907 -22.11239 -21.56145 -20.41186 -19.77209 -18.83822 -18.51609 -16.84732 -16.45674 -16.30097 -16.01693 -15.79990 -15.24841 -15.02978 -14.60998 -14.20707 -14.00665 -13.79384 -13.52983 -13.41320 -13.06516 -12.89381 -12.71417 -12.45225 -12.44374 -11.98822 -11.80807 -11.73023 -11.17345 -11.11187 -10.91271 -10.81602 -10.66334 -10.33655 -10.27910 -10.09988 -9.90689 -9.87526 -9.67104 -9.61108 -9.41669 -9.37414 -8.94454 -8.39137 -8.26801 -6.53864 -5.68933 -3.12322 0.51038 1.18463 1.58961 2.10738 3.40359 3.41140 3.47247 3.47505 3.69848 3.94940 4.18772 4.54940 4.66503 4.97929 5.03159 5.08193 5.17197 5.28894 5.36937 5.37427 5.38846 5.42430 5.51261 5.58180 5.67161 5.94527 6.07985 6.18561 6.21370 6.39387 6.40866 6.50298 6.58721 6.68148 6.72533 6.75483 6.96333 7.10038 7.19101 7.40320 7.49010 7.76430 7.89152 8.20748 8.55280 8.80644 9.29675 9.94285 10.50371 11.39043 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.004279 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.498716 B = 6542.403990 C = 7060.563294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.143 3.857 4 C 0.014 3.986 5 N -0.417 5.417 6 C 0.024 3.976 7 C 0.590 3.410 8 O -0.542 6.542 9 N -0.678 5.678 10 C 0.116 3.884 11 H 0.076 0.924 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.025 0.975 16 C -0.135 4.135 17 N -0.582 5.582 18 C -0.246 4.246 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.162 3.838 27 C -0.223 4.223 28 S 0.216 5.784 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.098 0.902 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 -9.861 8.208 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.063 3.937 4 C -0.266 4.266 5 N -0.134 5.134 6 C -0.112 4.112 7 C 0.373 3.627 8 O -0.420 6.420 9 N -0.327 5.327 10 C 0.010 3.990 11 H 0.094 0.906 12 C -0.156 4.156 13 C -0.171 4.171 14 C 0.060 3.940 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.305 5.305 18 C -0.376 4.376 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.726 3.274 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.035 3.965 27 C -0.365 4.365 28 S 0.472 5.528 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.116 0.884 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.491 -9.948 8.925 18.990 hybrid contribution -0.073 1.063 -0.204 1.085 sum -13.564 -8.885 8.721 18.411 Atomic orbital electron populations 1.22794 0.80133 1.03181 1.00363 1.87952 1.20175 1.26521 1.95533 1.20758 0.84438 0.85852 1.02652 1.26502 1.00523 1.07527 0.92034 1.66857 1.03386 1.12034 1.31149 1.20628 0.89829 1.06782 0.93933 1.16904 0.86386 0.77316 0.82137 1.90789 1.15978 1.51469 1.83790 1.45674 1.11388 1.71241 1.04432 1.21873 0.90830 1.01158 0.85109 0.90556 1.21693 0.98619 0.97860 0.97421 1.22078 0.97225 0.97742 1.00073 1.20455 0.92230 0.90885 0.90467 0.95768 1.21792 0.97626 1.00314 0.99556 1.44023 1.37015 1.18541 1.30963 1.19031 0.92962 0.95388 1.30186 0.91590 1.25024 0.95205 0.97745 1.01369 1.69972 0.98238 1.41907 1.44335 0.86479 0.77087 0.82500 0.81360 1.21364 1.21665 1.20984 1.21195 0.88980 0.86024 1.00282 1.26650 1.05914 1.07027 0.96906 1.82598 0.95138 1.63798 1.11303 0.89245 0.93784 0.93511 0.90853 0.89745 0.75922 0.92992 0.91040 0.92502 0.92872 0.92929 0.92116 0.94447 0.93693 0.95606 0.88428 0.79196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.22 10.69 -35.23 -0.38 -4.59 16 3 C 0.14 1.49 6.51 36.00 0.23 1.73 16 4 C 0.01 0.18 6.97 -13.61 -0.09 0.09 16 5 N -0.42 -7.05 10.12 -8.51 -0.09 -7.13 16 6 C 0.02 0.43 6.70 -84.52 -0.57 -0.14 16 7 C 0.59 12.42 7.76 -12.59 -0.10 12.32 16 8 O -0.54 -12.76 16.38 5.25 0.09 -12.67 16 9 N -0.68 -13.60 4.91 -54.78 -0.27 -13.87 16 10 C 0.12 2.34 2.81 -67.78 -0.19 2.15 16 11 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 12 C -0.12 -1.98 5.59 -26.66 -0.15 -2.13 16 13 C -0.13 -2.24 5.20 -26.61 -0.14 -2.38 16 14 C 0.17 3.39 3.50 -67.60 -0.24 3.16 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.54 7.95 37.16 0.30 -2.25 16 17 N -0.58 -14.28 2.91 -164.77 -0.48 -14.76 16 18 C -0.25 -6.66 8.61 -15.06 -0.13 -6.79 16 19 H 0.07 1.76 6.20 -52.49 -0.33 1.43 16 20 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 21 N -0.90 -26.86 11.14 55.49 0.62 -26.24 16 22 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 26 C 0.16 3.98 4.89 -3.71 -0.02 3.96 16 27 C -0.22 -3.38 10.62 29.66 0.31 -3.06 16 28 S 0.22 2.48 22.92 -107.50 -2.46 0.01 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 7.78 6.30 -40.82 -0.26 7.53 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.99 6.41 -51.93 -0.33 0.66 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 40 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.10 2.82 6.06 -51.93 -0.31 2.50 16 45 H 0.19 2.66 8.03 -52.49 -0.42 2.23 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -33.38 376.54 -8.69 -42.07 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.61 Total: 5.98 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 0.25 Total: 8.06 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.22 Total: -62.00 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.29 Total: -17.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.46 Total: 0.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.38 -8.69 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072113500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.823 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds