Wall clock time and date at job start Wed Apr 1 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99553 * 2 1 4 4 H 1.08998 * 109.47755 * 330.00112 * 3 2 1 5 5 C 1.53003 * 109.47230 * 90.00482 * 3 2 1 6 6 C 1.50701 * 109.47077 * 210.00020 * 3 2 1 7 7 N 1.28652 * 124.72299 * 134.72549 * 6 3 2 8 8 C 1.33557 * 115.76477 * 180.26487 * 7 6 3 9 9 C 1.47268 * 123.13681 * 179.97438 * 8 7 6 10 10 O 1.21627 * 120.00108 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00319 * 359.97438 * 9 8 7 12 12 C 1.47430 * 125.64430 * 0.02562 * 11 9 8 13 13 C 1.54910 * 104.83100 * 204.09102 * 12 11 9 14 14 C 1.55157 * 101.58367 * 322.99158 * 13 12 11 15 15 H 1.09004 * 110.71862 * 277.13878 * 14 13 12 16 16 N 1.46495 * 110.72313 * 153.86515 * 14 13 12 17 17 C 1.36937 * 120.00259 * 86.45363 * 16 14 13 18 18 H 1.08002 * 119.99532 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00247 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99863 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47678 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46960 * 120.00510 * 21 19 17 24 24 H 1.48499 * 109.47274 * 240.00065 * 21 19 17 25 25 C 1.47021 * 125.65239 * 179.71252 * 11 9 8 26 26 H 1.09001 * 109.88091 * 298.39646 * 25 11 9 27 27 C 1.52996 * 109.88270 * 59.56139 * 25 11 9 28 28 C 1.35202 * 113.72404 * 0.02562 * 8 7 6 29 29 S 1.70778 * 124.72055 * 315.02760 * 6 3 2 30 30 H 1.09000 * 109.47455 * 59.99763 * 1 2 3 31 31 H 1.09008 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47341 * 299.99493 * 1 2 3 33 33 H 1.08998 * 109.47214 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46518 * 299.99841 * 5 3 2 35 35 H 1.09001 * 109.47517 * 59.99425 * 5 3 2 36 36 H 1.08997 * 110.36818 * 322.92453 * 12 11 9 37 37 H 1.09001 * 110.37076 * 85.25424 * 12 11 9 38 38 H 1.09002 * 111.00710 * 81.06199 * 13 12 11 39 39 H 1.09000 * 111.00834 * 204.91755 * 13 12 11 40 40 H 0.97000 * 119.99650 * 266.45175 * 16 14 13 41 41 H 0.97003 * 120.00209 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47103 * 58.54566 * 27 25 11 43 43 H 1.08994 * 109.47597 * 178.54476 * 27 25 11 44 44 H 1.09009 * 109.47184 * 298.54732 * 27 25 11 45 45 H 1.07997 * 125.59096 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3385 1.2640 -0.7104 7 7 3.7304 2.1249 -1.5825 8 6 4.9410 1.9122 -2.1049 9 6 5.5480 2.7948 -3.1155 10 8 6.6557 2.5472 -3.5526 11 7 4.8762 3.8769 -3.5561 12 6 3.5331 4.2934 -3.1133 13 6 2.9755 5.1426 -4.2828 14 6 4.2493 5.8881 -4.7614 15 1 4.4338 6.7697 -4.1474 16 7 4.1353 6.2541 -6.1753 17 6 3.5261 7.4275 -6.5319 18 1 3.1300 8.0833 -5.7707 19 6 3.4186 7.7745 -7.8716 20 7 3.9017 6.9755 -8.7992 21 14 2.5869 9.3748 -8.3580 22 1 2.1324 10.0876 -7.1372 23 1 3.5503 10.2280 -9.0991 24 1 1.4173 9.0814 -9.2247 25 6 5.3640 4.8411 -4.5531 26 1 6.2683 5.3273 -4.1871 27 6 5.6533 4.1235 -5.8729 28 6 5.5568 0.8105 -1.6201 29 16 4.5303 0.0636 -0.4753 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.6613 2.7670 1.4425 34 1 1.2568 1.8014 1.9563 35 1 2.8829 1.0775 1.9564 36 1 2.9021 3.4210 -2.9435 37 1 3.6019 4.8950 -2.2069 38 1 2.5759 4.5059 -5.0721 39 1 2.2207 5.8455 -3.9303 40 1 4.4914 5.6652 -6.8589 41 1 3.8262 7.2177 -9.7355 42 1 4.7456 3.6353 -6.2277 43 1 5.9897 4.8480 -6.6144 44 1 6.4308 3.3755 -5.7170 45 1 6.5370 0.4603 -1.9080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074652078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:04 Heat of formation + Delta-G solvation = -3.646860 kcal Electronic energy + Delta-G solvation = -27498.586117 eV Core-core repulsion = 23644.271063 eV Total energy + Delta-G solvation = -3854.315054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73964 -39.34523 -38.43940 -37.28273 -34.12852 -32.88789 -31.60546 -30.63527 -29.92888 -28.93779 -27.30497 -25.99510 -25.09385 -24.19256 -23.15278 -22.27519 -20.87855 -19.69426 -19.12456 -18.13318 -17.41701 -16.78505 -16.59799 -16.21632 -15.89739 -15.52438 -15.36334 -14.81854 -14.40319 -14.27835 -13.86172 -13.60336 -13.39846 -13.30467 -13.12606 -12.89716 -12.65455 -12.50226 -12.16432 -12.10406 -11.94858 -11.70360 -11.54804 -11.39025 -11.17466 -10.95836 -10.81682 -10.40514 -10.33597 -10.20638 -10.03099 -9.87717 -9.79177 -9.71819 -9.59684 -9.14004 -8.91011 -8.30271 -6.98909 -5.79429 -3.08833 0.30769 1.00675 1.43858 1.82993 2.92991 3.26443 3.42132 3.42465 3.47957 3.50157 3.95888 4.41665 4.57297 4.61592 4.67693 4.88420 4.92959 4.98505 5.07542 5.20302 5.21954 5.25963 5.29507 5.33033 5.46935 5.60924 5.66152 5.66701 5.69507 5.82444 5.96575 6.16540 6.25185 6.30219 6.44315 6.57271 6.61060 6.65655 6.78108 6.86399 7.04518 7.22026 7.69055 7.78752 8.32009 8.39388 9.50787 10.06501 10.41739 11.43253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.002728 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.617464 B =10262.856543 C =11456.198830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.169 4.169 6 C 0.014 3.986 7 N -0.427 5.427 8 C 0.021 3.979 9 C 0.602 3.398 10 O -0.540 6.540 11 N -0.589 5.589 12 C 0.103 3.897 13 C -0.155 4.155 14 C 0.174 3.826 15 H 0.062 0.938 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.128 3.872 26 H 0.073 0.927 27 C -0.159 4.159 28 C -0.232 4.232 29 S 0.243 5.757 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.391 0.609 41 H 0.255 0.745 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -15.722 22.665 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.227 4.227 6 C -0.265 4.265 7 N -0.144 5.144 8 C -0.115 4.115 9 C 0.387 3.613 10 O -0.418 6.418 11 N -0.321 5.321 12 C -0.020 4.020 13 C -0.197 4.197 14 C 0.062 3.938 15 H 0.080 0.920 16 N -0.362 5.362 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.025 3.975 26 H 0.091 0.909 27 C -0.217 4.217 28 C -0.374 4.374 29 S 0.500 5.500 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.916 -16.323 22.885 28.381 hybrid contribution -0.236 1.513 -1.279 1.995 sum -4.152 -14.810 21.606 26.521 Atomic orbital electron populations 1.22863 0.79703 1.03311 1.00577 1.87895 1.20718 1.26380 1.95123 1.20292 0.88361 0.86131 0.94983 0.88705 1.22297 1.03334 1.02529 0.94587 1.26845 1.02057 0.96912 1.00673 1.67087 1.12797 1.26606 1.07870 1.20410 0.91248 0.97668 1.02136 1.16643 0.84308 0.79716 0.80594 1.90792 1.19367 1.72793 1.58826 1.48364 1.18726 1.24270 1.40695 1.22586 0.82844 0.99512 0.97092 1.23579 1.00205 0.99020 0.96872 1.21180 0.90608 0.93414 0.88597 0.91995 1.42677 1.69611 1.23934 0.99929 1.19285 1.29690 0.96825 0.91435 0.91026 1.24752 1.01574 0.98737 0.95758 1.69671 1.51008 1.37425 0.99830 0.86106 0.78724 0.83110 0.78150 1.20526 1.21870 1.21890 1.21889 0.97899 0.89289 0.88442 0.90914 1.22007 1.01940 1.01064 0.96664 1.26725 1.07222 1.00104 1.03395 1.82848 1.05887 1.26556 1.34731 0.93355 0.89097 0.93540 0.90589 0.90977 0.91343 0.89037 0.92055 0.90889 0.90742 0.77118 0.93465 0.92476 0.90123 0.92113 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.15 10.17 -35.23 -0.36 -3.51 16 3 C 0.16 1.33 3.23 -27.88 -0.09 1.24 16 4 H 0.10 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.04 9.51 37.16 0.35 -0.69 16 6 C 0.01 0.15 6.30 -13.61 -0.09 0.06 16 7 N -0.43 -5.57 7.33 -8.51 -0.06 -5.63 16 8 C 0.02 0.30 6.61 -84.53 -0.56 -0.26 16 9 C 0.60 10.52 7.61 -12.59 -0.10 10.43 16 10 O -0.54 -10.63 15.60 5.25 0.08 -10.55 16 11 N -0.59 -10.19 3.08 -164.32 -0.51 -10.69 16 12 C 0.10 1.58 6.04 -2.53 -0.02 1.57 16 13 C -0.16 -2.74 6.77 -24.58 -0.17 -2.91 16 14 C 0.17 3.49 3.45 -66.09 -0.23 3.26 16 15 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 16 N -0.72 -17.76 5.02 -51.65 -0.26 -18.02 16 17 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.13 2.42 3.49 -66.95 -0.23 2.18 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 C -0.16 -3.13 7.93 37.16 0.29 -2.84 16 28 C -0.23 -2.73 10.62 29.65 0.31 -2.42 16 29 S 0.24 2.19 22.73 -107.50 -2.44 -0.25 16 30 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.05 0.19 7.87 -51.93 -0.41 -0.22 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 1.36 6.02 -51.93 -0.31 1.05 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.39 10.21 4.94 -40.82 -0.20 10.01 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.08 1.70 6.73 -51.93 -0.35 1.35 16 44 H 0.06 1.19 6.73 -51.92 -0.35 0.84 16 45 H 0.19 2.02 8.03 -52.49 -0.42 1.60 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.51 379.11 -8.42 -40.93 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.62 Total: 8.29 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 0.34 Total: 3.74 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.10 Total: -61.50 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.28 Total: -14.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.44 Total: -0.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.51 -8.42 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074652078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.284 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds