Wall clock time and date at job start Wed Apr 1 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00074 * 2 1 4 4 H 1.08998 * 109.46610 * 329.99409 * 3 2 1 5 5 C 1.52997 * 109.47264 * 89.99687 * 3 2 1 6 6 C 1.50697 * 109.46996 * 210.00118 * 3 2 1 7 7 N 1.29433 * 124.80156 * 314.69732 * 6 3 2 8 8 C 1.30941 * 117.36243 * 179.77276 * 7 6 3 9 9 C 1.35663 * 114.18914 * 0.50917 * 8 7 6 10 10 C 1.46695 * 126.12818 * 179.69708 * 9 8 7 11 11 O 1.21682 * 119.99826 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99654 * 0.04598 * 10 9 8 13 13 C 1.46508 * 119.99350 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.64368 * 323.31382 * 13 12 10 15 15 C 1.55158 * 110.71788 * 86.45244 * 13 12 10 16 16 C 1.54908 * 101.57932 * 153.86366 * 15 13 12 17 17 N 1.47432 * 104.83332 * 322.98914 * 16 15 13 18 18 C 1.36937 * 125.65109 * 204.16030 * 17 16 15 19 19 H 1.07997 * 119.99818 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99798 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99795 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47045 * 89.99742 * 22 20 18 24 24 H 1.48506 * 109.46902 * 209.99616 * 22 20 18 25 25 H 1.48501 * 109.46981 * 329.99264 * 22 20 18 26 26 C 1.47026 * 108.69948 * 24.13115 * 17 16 15 27 27 H 1.08998 * 109.88038 * 239.52323 * 26 17 16 28 28 C 1.53000 * 109.88007 * 118.35744 * 26 17 16 29 29 S 1.70949 * 124.80705 * 134.99978 * 6 3 2 30 30 H 1.09003 * 109.46979 * 59.99699 * 1 2 3 31 31 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47253 * 300.00831 * 1 2 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00108 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00089 * 5 3 2 36 36 H 1.07997 * 122.90763 * 180.24605 * 8 7 6 37 37 H 0.96990 * 120.00641 * 0.02562 * 12 10 9 38 38 H 1.08997 * 111.00834 * 271.93919 * 15 13 12 39 39 H 1.09004 * 111.00402 * 35.79511 * 15 13 12 40 40 H 1.08992 * 110.36834 * 81.82868 * 16 15 13 41 41 H 1.09005 * 110.36740 * 204.15597 * 16 15 13 42 42 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.47412 * 302.18727 * 28 26 17 44 44 H 1.08994 * 109.47535 * 62.19043 * 28 26 17 45 45 H 1.09007 * 109.46716 * 182.18842 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2453 0.3582 -0.5290 8 6 5.3472 0.4610 -1.2289 9 6 5.3823 1.5360 -2.0557 10 6 6.4864 1.9050 -2.9482 11 8 6.3993 2.8987 -3.6452 12 7 7.5972 1.1433 -2.9965 13 6 8.6997 1.5116 -3.8883 14 1 8.3174 1.9267 -4.8208 15 6 9.6568 2.5151 -3.1924 16 6 10.9888 2.2395 -3.9336 17 7 10.9984 0.7833 -4.1637 18 6 12.1145 0.0119 -4.3492 19 1 12.0154 -1.0513 -4.5107 20 6 13.3734 0.5967 -4.3298 21 7 13.4941 1.8925 -4.1335 22 14 14.8960 -0.4557 -4.5822 23 1 15.2201 -0.5180 -6.0300 24 1 16.0382 0.1414 -3.8444 25 1 14.6400 -1.8268 -4.0726 26 6 9.6111 0.2963 -4.1602 27 1 9.4814 -0.4476 -3.3742 28 6 9.2710 -0.3152 -5.5208 29 16 3.8643 2.4102 -1.8646 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 2.6614 2.7670 1.4424 34 1 2.8829 1.0775 1.9563 35 1 1.2568 1.8016 1.9563 36 1 6.1596 -0.2463 -1.1515 37 1 7.6664 0.3509 -2.4415 38 1 9.3275 3.5422 -3.3494 39 1 9.7485 2.2942 -2.1289 40 1 11.0120 2.7738 -4.8833 41 1 11.8359 2.5310 -3.3126 42 1 14.3737 2.3012 -4.1203 43 1 9.4222 0.4297 -6.3020 44 1 9.9182 -1.1723 -5.7060 45 1 8.2300 -0.6386 -5.5237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088569578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:40 Heat of formation + Delta-G solvation = -4.296491 kcal Electronic energy + Delta-G solvation = -26711.028459 eV Core-core repulsion = 22856.685234 eV Total energy + Delta-G solvation = -3854.343224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.43597 -39.50241 -38.36320 -37.51697 -34.15693 -32.95612 -32.06778 -30.48567 -30.07155 -28.44729 -27.28061 -26.31200 -24.71287 -24.02168 -23.28843 -21.78938 -20.33614 -20.11358 -19.43419 -18.49618 -17.54759 -16.80781 -16.56017 -16.02654 -15.78749 -15.69445 -15.12614 -14.76258 -14.56636 -14.25429 -14.01283 -13.89327 -13.60770 -13.37170 -13.12505 -12.85578 -12.73610 -12.18078 -12.15330 -12.05125 -11.82538 -11.60159 -11.48863 -11.16883 -10.88935 -10.87559 -10.62596 -10.57039 -10.38465 -10.13587 -10.09870 -9.79729 -9.72712 -9.66781 -9.58002 -9.26083 -8.74602 -8.65721 -6.90339 -5.67565 -3.10666 -0.03610 0.80551 1.35909 2.24527 3.14335 3.24820 3.36960 3.38751 3.44034 3.45630 3.65255 4.26297 4.46056 4.56646 4.62524 4.75073 4.84894 4.91848 4.97436 5.15205 5.23711 5.25885 5.28086 5.39307 5.49805 5.59057 5.67061 5.75731 5.78227 6.08466 6.19566 6.26321 6.30439 6.48428 6.55767 6.60951 6.68284 6.82398 7.04885 7.36669 7.47815 7.56420 7.60285 7.82825 8.19467 8.32821 9.18225 9.79037 10.42464 11.35766 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.002133 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.098633 B =13121.685768 C =13372.381263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.028 3.972 7 N -0.449 5.449 8 C 0.089 3.911 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.536 6.536 12 N -0.700 5.700 13 C 0.137 3.863 14 H 0.095 0.905 15 C -0.153 4.153 16 C 0.152 3.848 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.156 3.844 27 H 0.037 0.963 28 C -0.156 4.156 29 S 0.236 5.764 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.399 0.601 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.778 -0.098 9.138 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.248 4.248 7 N -0.163 5.163 8 C -0.070 4.070 9 C -0.407 4.407 10 C 0.376 3.624 11 O -0.414 6.414 12 N -0.350 5.350 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.193 4.193 16 C 0.027 3.973 17 N -0.320 5.320 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.047 3.953 27 H 0.055 0.945 28 C -0.215 4.215 29 S 0.495 5.505 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -26.056 0.989 8.563 27.445 hybrid contribution 1.397 -1.429 0.101 2.001 sum -24.659 -0.440 8.663 26.140 Atomic orbital electron populations 1.22898 0.80577 1.03378 1.00149 1.88100 1.19657 1.25572 1.94925 1.20467 0.87330 0.86363 0.95326 0.89976 1.22270 1.03374 1.02310 0.94778 1.27319 1.00369 0.96420 1.00654 1.66031 1.00758 1.25446 1.24087 1.22278 0.96163 0.96461 0.92109 1.25957 1.02199 1.03322 1.09178 1.16645 0.81013 0.83400 0.81376 1.90847 1.80958 1.26158 1.43421 1.45852 1.16421 1.28629 1.44127 1.22247 0.84959 0.96640 0.92927 0.88738 1.23417 0.97979 0.97892 0.99975 1.21966 0.94008 0.83829 0.97447 1.44488 0.98934 1.04181 1.84394 1.19017 0.83319 0.90829 1.41697 0.90419 1.24798 0.97539 0.96033 1.02252 1.69791 1.22013 1.08749 1.56327 0.86074 0.82670 0.79085 0.77649 1.21644 1.21674 1.20705 1.20981 0.86310 0.92611 0.95350 0.94547 1.22249 0.98890 1.01292 0.99115 1.83985 1.07425 1.25514 1.33591 0.93759 0.89081 0.93669 0.91055 0.90515 0.91146 0.79920 0.76626 0.91827 0.91894 0.96662 0.87232 0.93669 0.92843 0.92600 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.41 10.32 -35.23 -0.36 -3.77 16 3 C 0.17 1.33 3.23 -27.89 -0.09 1.24 16 4 H 0.08 0.45 7.78 -51.93 -0.40 0.04 16 5 C -0.17 -1.10 9.51 37.16 0.35 -0.75 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.20 16 7 N -0.45 -5.48 10.49 -11.50 -0.12 -5.60 16 8 C 0.09 1.02 10.93 -18.85 -0.21 0.81 16 9 C -0.28 -3.58 6.48 -37.09 -0.24 -3.82 16 10 C 0.59 9.09 7.78 -12.85 -0.10 8.99 16 11 O -0.54 -10.00 16.69 5.20 0.09 -9.92 16 12 N -0.70 -10.28 5.19 -53.33 -0.28 -10.56 16 13 C 0.14 2.45 2.76 -66.09 -0.18 2.27 16 14 H 0.09 1.81 7.41 -51.93 -0.38 1.42 16 15 C -0.15 -3.01 6.77 -24.58 -0.17 -3.17 16 16 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 17 N -0.59 -14.59 3.13 -162.57 -0.51 -15.10 16 18 C -0.22 -5.92 9.89 -15.06 -0.15 -6.07 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 22 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C 0.16 3.06 3.48 -66.95 -0.23 2.83 16 27 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 28 C -0.16 -2.85 9.14 37.16 0.34 -2.51 16 29 S 0.24 2.50 23.01 -107.50 -2.47 0.02 16 30 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 36 H 0.18 1.66 7.15 -52.49 -0.38 1.28 16 37 H 0.40 4.82 7.02 -40.82 -0.29 4.53 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 45 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -32.95 384.28 -8.84 -41.79 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.74 Total: 1.94 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 0.23 Total: 4.52 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.35 Total: -57.12 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.28 Total: -13.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.47 Total: 0.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.95 -8.84 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088569578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.493 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds