Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99821 * 2 1 4 4 C 1.50698 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.29026 * 124.91617 * 90.00283 * 4 3 2 6 6 C 1.31783 * 117.12459 * 179.97438 * 5 4 3 7 7 C 1.50700 * 122.74824 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47284 * 304.97229 * 7 6 5 9 9 O 1.21283 * 119.99666 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99954 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99793 * 180.02562 * 10 8 7 12 12 H 1.09007 * 110.64156 * 325.69347 * 11 10 8 13 13 C 1.55156 * 110.72401 * 88.83652 * 11 10 8 14 14 C 1.54915 * 101.58000 * 153.86616 * 13 11 10 15 15 N 1.47428 * 104.83204 * 322.99088 * 14 13 11 16 16 C 1.36933 * 125.64794 * 204.16973 * 15 14 13 17 17 H 1.07999 * 120.00105 * 169.83042 * 16 15 14 18 18 C 1.38817 * 120.00240 * 349.83030 * 16 15 14 19 19 N 1.31617 * 119.99361 * 350.47929 * 18 16 15 20 20 Si 1.86791 * 120.00303 * 170.47918 * 18 16 15 21 21 H 1.48501 * 109.47395 * 94.13605 * 20 18 16 22 22 H 1.48499 * 109.47318 * 214.13750 * 20 18 16 23 23 H 1.48501 * 109.47195 * 334.13915 * 20 18 16 24 24 C 1.47315 * 108.73342 * 24.28586 * 15 14 13 25 25 H 1.09003 * 109.85185 * 239.38579 * 24 15 14 26 26 C 1.53009 * 110.06114 * 118.12904 * 24 15 14 27 27 C 1.33636 * 114.49745 * 359.97438 * 6 5 4 28 28 S 1.70976 * 124.91539 * 269.69223 * 4 3 2 29 29 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47513 * 300.00301 * 1 2 3 31 31 H 1.09008 * 109.46674 * 60.00490 * 1 2 3 32 32 H 1.09002 * 109.47495 * 59.99380 * 3 2 1 33 33 H 1.08998 * 109.47023 * 299.99678 * 3 2 1 34 34 H 1.09006 * 109.47121 * 64.97361 * 7 6 5 35 35 H 1.08999 * 109.47164 * 184.97026 * 7 6 5 36 36 H 0.97001 * 119.99640 * 359.97438 * 10 8 7 37 37 H 1.08996 * 111.00560 * 271.94169 * 13 11 10 38 38 H 1.09000 * 111.00030 * 35.75639 * 13 11 10 39 39 H 1.08998 * 110.36908 * 81.83483 * 14 13 11 40 40 H 1.08997 * 110.36346 * 204.15424 * 14 13 11 41 41 H 0.97008 * 119.99729 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.46707 * 302.26479 * 26 24 15 43 43 H 1.09001 * 109.46978 * 62.26761 * 26 24 15 44 44 H 1.09004 * 109.46689 * 182.26793 * 26 24 15 45 45 H 1.08006 * 126.03344 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2491 1.1280 -1.0571 6 6 5.5507 1.0255 -0.8778 7 6 6.5277 0.9486 -2.0227 8 6 6.1452 -0.1890 -2.9340 9 8 5.1750 -0.8706 -2.6787 10 7 6.8818 -0.4496 -4.0322 11 6 6.5096 -1.5552 -4.9184 12 1 6.0872 -2.3811 -4.3459 13 6 5.5131 -1.0751 -6.0063 14 6 5.7863 -2.0874 -7.1468 15 7 7.2409 -2.3234 -7.1014 16 6 8.0133 -2.7495 -8.1487 17 1 9.0900 -2.7366 -8.0659 18 6 7.4124 -3.1980 -9.3169 19 7 6.1112 -3.3919 -9.3550 20 14 8.4505 -3.5264 -10.8347 21 1 8.8276 -4.9622 -10.8754 22 1 7.6706 -3.1848 -12.0513 23 1 9.6788 -2.6934 -10.7840 24 6 7.7260 -2.0278 -5.7421 25 1 8.4769 -1.2386 -5.7806 26 6 8.3231 -3.2880 -5.1124 27 6 5.9332 0.9963 0.4023 28 16 4.4881 1.1170 1.4030 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.5071 1.8844 -2.5814 35 1 7.5316 0.7802 -1.6329 36 1 7.6579 0.0953 -4.2361 37 1 4.4842 -1.1512 -5.6546 38 1 5.7412 -0.0575 -6.3234 39 1 5.2454 -3.0165 -6.9671 40 1 5.5010 -1.6613 -8.1086 41 1 5.6912 -3.7057 -10.1712 42 1 7.5714 -4.0771 -5.0960 43 1 9.1813 -3.6157 -5.6992 44 1 8.6421 -3.0687 -4.0934 45 1 6.9491 0.9161 0.7602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088966576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -31.222886 kcal Electronic energy + Delta-G solvation = -26859.024559 eV Core-core repulsion = 23003.513718 eV Total energy + Delta-G solvation = -3855.510841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38837 -40.44591 -39.08372 -38.68905 -35.51809 -33.97413 -33.43547 -32.07199 -30.87843 -29.84060 -28.78113 -26.95595 -26.35626 -25.80791 -23.87334 -22.30630 -21.53565 -21.37066 -20.64730 -18.90018 -18.68681 -17.92198 -17.59041 -17.25836 -16.92080 -16.66269 -16.54658 -16.06597 -15.77735 -15.52222 -15.27623 -15.08516 -14.53098 -14.33341 -14.22299 -13.97728 -13.88501 -13.57737 -13.19851 -13.17252 -13.09601 -12.88709 -12.78178 -12.57557 -12.40980 -12.32796 -12.25005 -12.07705 -11.91898 -11.61813 -11.51974 -10.87524 -10.79356 -10.67065 -10.55784 -10.31969 -9.95164 -9.72963 -8.87271 -7.84923 -5.20520 -0.33078 0.42703 0.74306 1.47876 1.49154 1.58662 1.64798 1.76617 2.31102 2.54271 2.79730 3.28826 3.35217 3.56568 3.76688 3.87122 3.93723 4.02422 4.10281 4.21608 4.26749 4.32014 4.41241 4.47749 4.49871 4.54434 4.55515 4.62881 4.66283 4.77428 4.81857 4.83691 4.95707 5.04824 5.13352 5.17226 5.39327 5.48353 5.55841 5.67489 5.69980 6.07871 6.21006 6.68124 6.85472 7.08132 7.40616 7.77032 8.44031 9.27313 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002278 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.800063 B =12290.172323 C =13267.103680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.138 3.862 4 C 0.010 3.990 5 N -0.469 5.469 6 C 0.055 3.945 7 C -0.058 4.058 8 C 0.511 3.489 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.156 3.844 12 H 0.070 0.930 13 C -0.138 4.138 14 C 0.184 3.816 15 N -0.613 5.613 16 C -0.231 4.231 17 H 0.086 0.914 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.977 3.023 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.264 1.264 24 C 0.151 3.849 25 H 0.061 0.939 26 C -0.145 4.145 27 C -0.242 4.242 28 S 0.177 5.823 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.416 0.584 37 H 0.057 0.943 38 H 0.074 0.926 39 H -0.009 1.009 40 H 0.038 0.962 41 H 0.246 0.754 42 H 0.027 0.973 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 15.307 25.436 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.059 3.941 4 C -0.267 4.267 5 N -0.185 5.185 6 C -0.078 4.078 7 C -0.099 4.099 8 C 0.298 3.702 9 O -0.452 6.452 10 N -0.358 5.358 11 C 0.050 3.950 12 H 0.088 0.912 13 C -0.178 4.178 14 C 0.058 3.942 15 N -0.338 5.338 16 C -0.360 4.360 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.189 1.189 24 C 0.045 3.955 25 H 0.079 0.921 26 C -0.204 4.204 27 C -0.382 4.382 28 S 0.432 5.568 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.009 0.991 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.726 14.638 26.015 29.975 hybrid contribution 0.572 -0.511 -2.236 2.364 sum -2.153 14.128 23.779 27.743 Atomic orbital electron populations 1.22981 0.78375 1.04023 1.01544 1.87950 1.22281 1.27591 1.95729 1.20935 0.84018 0.85667 1.03491 1.26864 1.01371 1.06379 0.92116 1.65947 1.05821 1.13653 1.33079 1.19922 0.89704 1.03457 0.94700 1.20357 0.99085 0.98168 0.92328 1.21068 0.82191 0.85612 0.81296 1.90751 1.28761 1.51634 1.74091 1.45802 1.31955 1.33483 1.24579 1.21579 0.94691 0.89207 0.89544 0.91229 1.23167 0.98640 0.99679 0.96309 1.21082 0.84488 0.93362 0.95293 1.44823 1.04303 1.78409 1.06298 1.19370 0.90263 1.34608 0.91713 0.89588 1.25691 0.97135 1.01500 1.01825 1.70183 1.10220 1.52532 1.27185 0.85085 0.77911 0.77641 0.78801 1.21667 1.22379 1.18860 1.21293 0.93756 0.96151 0.84320 0.92103 1.22109 1.00113 0.98115 1.00112 1.27332 1.05222 1.10579 0.95021 1.83551 0.96828 1.65721 1.10688 0.88935 0.91339 0.93249 0.87866 0.90580 0.85097 0.82906 0.74602 0.92443 0.90711 0.99143 0.94330 0.94472 0.95347 0.93286 0.90872 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.21 10.69 -148.98 -1.59 -11.80 16 3 C 0.14 2.75 6.51 71.24 0.46 3.21 16 4 C 0.01 0.25 7.02 88.52 0.62 0.87 16 5 N -0.47 -13.58 9.68 -179.41 -1.74 -15.31 16 6 C 0.05 1.26 5.63 41.52 0.23 1.49 16 7 C -0.06 -1.03 6.19 29.10 0.18 -0.85 16 8 C 0.51 14.70 7.80 87.66 0.68 15.38 16 9 O -0.57 -23.18 15.13 -3.04 -0.05 -23.22 16 10 N -0.71 -19.02 5.19 -436.92 -2.27 -21.29 16 11 C 0.16 5.74 2.79 46.18 0.13 5.87 16 12 H 0.07 2.91 7.33 -2.38 -0.02 2.89 16 13 C -0.14 -5.73 6.77 31.99 0.22 -5.52 16 14 C 0.18 9.52 5.42 86.86 0.47 9.99 16 15 N -0.61 -31.15 3.14 -667.54 -2.10 -33.24 16 16 C -0.23 -12.67 9.88 84.04 0.83 -11.84 16 17 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 18 C -0.07 -3.91 5.40 84.86 0.46 -3.45 16 19 N -0.95 -58.47 10.69 21.65 0.23 -58.24 16 20 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.15 5.93 3.49 45.29 0.16 6.09 16 25 H 0.06 2.13 7.70 -2.39 -0.02 2.12 16 26 C -0.15 -5.35 9.15 71.99 0.66 -4.69 16 27 C -0.24 -4.00 11.07 66.78 0.74 -3.26 16 28 S 0.18 2.97 23.18 -56.49 -1.31 1.66 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.15 1.34 8.03 -2.39 -0.02 1.32 16 36 H 0.42 8.04 8.34 -92.71 -0.77 7.27 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 39 H -0.01 -0.55 8.07 -2.39 -0.02 -0.57 16 40 H 0.04 2.22 6.94 -2.39 -0.02 2.20 16 41 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -83.35 386.81 0.53 -82.82 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.23 Total: 15.89 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 7.09 Total: 14.95 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.87 Total: -128.08 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.64 Total: -35.03 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.66 kcal Total: -83.35 0.53 -82.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088966576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.595 kcal (2) G-P(sol) polarization free energy of solvation -83.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds