Wall clock time and date at job start Wed Apr 1 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.65765 * 2 1 4 4 C 1.54941 * 110.74015 * 236.60996 * 2 1 3 5 5 N 1.48377 * 103.37625 * 204.38908 * 4 2 1 6 6 C 1.34786 * 127.17223 * 219.23552 * 5 4 2 7 7 O 1.21277 * 119.99813 * 179.80071 * 6 5 4 8 8 C 1.50696 * 119.99877 * 359.79560 * 6 5 4 9 9 S 1.80997 * 109.47219 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00267 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00066 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00317 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99942 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00362 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47171 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47441 * 119.99735 * 14 12 10 17 17 H 1.48503 * 109.47027 * 239.99942 * 14 12 10 18 18 C 1.47485 * 105.79701 * 39.06652 * 5 4 2 19 19 C 1.54005 * 107.24392 * 334.78511 * 18 5 4 20 20 H 1.08993 * 110.32614 * 120.10270 * 19 18 5 21 21 C 1.53001 * 110.32503 * 242.31631 * 19 18 5 22 22 N 1.46901 * 109.47281 * 293.54730 * 21 19 18 23 23 C 1.46895 * 111.00189 * 180.02562 * 22 21 19 24 24 C 1.50701 * 109.46968 * 179.97438 * 23 22 21 25 25 C 1.41374 * 126.80555 * 95.00173 * 24 23 22 26 26 C 1.35447 * 103.99156 * 179.97438 * 25 24 23 27 27 O 1.34043 * 106.44531 * 359.97438 * 26 25 24 28 28 N 1.20928 * 111.56506 * 359.70697 * 27 26 25 29 29 H 1.09000 * 109.46800 * 296.81017 * 1 2 3 30 30 H 1.09000 * 109.46856 * 56.80362 * 1 2 3 31 31 H 1.09002 * 109.47265 * 176.80678 * 1 2 3 32 32 H 1.09005 * 110.66544 * 322.73265 * 4 2 1 33 33 H 1.09003 * 110.66198 * 85.84309 * 4 2 1 34 34 H 1.08999 * 109.47349 * 299.99826 * 8 6 5 35 35 H 1.08999 * 109.47038 * 59.99812 * 8 6 5 36 36 H 0.97002 * 119.99866 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.91598 * 215.32597 * 18 5 4 38 38 H 1.08999 * 109.91369 * 94.23678 * 18 5 4 39 39 H 1.09001 * 109.46998 * 53.54433 * 21 19 18 40 40 H 1.09001 * 109.47115 * 173.54535 * 21 19 18 41 41 H 1.00906 * 110.99704 * 303.95615 * 22 21 19 42 42 H 1.09004 * 109.47157 * 299.99751 * 23 22 21 43 43 H 1.08999 * 109.47391 * 60.00069 * 23 22 21 44 44 H 1.08004 * 128.00612 * 0.02765 * 25 24 23 45 45 H 1.07997 * 126.78104 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0787 -0.7974 -1.2098 5 7 3.4297 -1.2156 -0.7611 6 6 4.5563 -1.2582 -1.4998 7 8 5.5984 -1.6202 -0.9961 8 6 4.5209 -0.8561 -2.9517 9 16 6.1766 -1.0209 -3.6640 10 6 5.8522 -0.5011 -5.3160 11 1 4.8536 -0.2070 -5.6034 12 6 6.8799 -0.4706 -6.2484 13 7 8.0971 -0.8295 -5.8984 14 14 6.5359 0.0798 -8.0000 15 1 5.0986 0.4277 -8.1363 16 1 7.3658 1.2696 -8.3171 17 1 6.8694 -1.0210 -8.9393 18 6 3.2875 -1.5717 0.6630 19 6 2.0775 -0.7916 1.2100 20 1 1.3210 -1.4807 1.5853 21 6 2.5199 0.1678 2.3166 22 7 2.9899 -0.6039 3.4749 23 6 3.4233 0.2864 4.5600 24 6 3.8969 -0.5393 5.7283 25 6 5.2290 -0.9167 6.0141 26 6 5.1269 -1.6404 7.1544 27 8 3.8258 -1.6602 7.4760 28 7 3.1612 -1.0403 6.6783 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5627 -0.8600 31 1 -0.3634 -1.0261 -0.0572 32 1 1.4558 -1.6693 -1.4103 33 1 2.1458 -0.1605 -2.0918 34 1 3.8279 -1.5020 -3.4909 35 1 4.1910 0.1795 -3.0340 36 1 8.8153 -0.8078 -6.5500 37 1 4.1883 -1.2897 1.2081 38 1 3.1139 -2.6432 0.7622 39 1 3.3286 0.7991 1.9483 40 1 1.6778 0.7927 2.6139 41 1 2.2790 -1.2444 3.7952 42 1 4.2381 0.9189 4.2075 43 1 2.5871 0.9118 4.8727 44 1 6.1217 -0.6815 5.4534 45 1 5.9344 -2.1085 7.6977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105847708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:39 Heat of formation + Delta-G solvation = 27.818953 kcal Electronic energy + Delta-G solvation = -26129.593959 eV Core-core repulsion = 22276.643365 eV Total energy + Delta-G solvation = -3852.950594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.24413 -39.99550 -37.93680 -36.61234 -34.16757 -32.78693 -32.41736 -31.99004 -30.78265 -29.15760 -26.75982 -26.36446 -25.48195 -24.47565 -23.44419 -21.90731 -21.37754 -20.21125 -19.25751 -18.17156 -17.85859 -17.64523 -16.63740 -16.27031 -15.96232 -15.49124 -15.19444 -15.04344 -14.79891 -14.52230 -14.14976 -13.86706 -13.67298 -13.50594 -13.29753 -12.98206 -12.86278 -12.73799 -12.52268 -12.14688 -12.02942 -11.96085 -11.68743 -11.60173 -11.06839 -11.05848 -11.00037 -10.94371 -10.83280 -10.73684 -10.47515 -9.97643 -9.79099 -9.33834 -9.06611 -8.86822 -8.46254 -8.20832 -6.48650 -6.20816 -3.91090 1.17496 1.86640 2.94422 2.96059 3.12575 3.21867 3.27138 3.31824 3.63050 3.65000 3.94553 4.18216 4.21084 4.33327 4.37590 4.53903 4.82208 4.90198 4.92524 4.98322 5.03312 5.12081 5.14277 5.16819 5.21926 5.24736 5.33636 5.38349 5.42088 5.46518 5.59660 5.64365 5.68218 5.69438 5.83955 5.86230 5.97260 6.01411 6.13631 6.15937 6.43422 6.54014 6.90255 7.60681 7.78408 7.91309 8.36349 8.63251 9.24495 10.86664 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002069 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.505975 B =13530.036109 C =14887.798129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.085 0.915 4 C 0.105 3.895 5 N -0.630 5.630 6 C 0.551 3.449 7 O -0.516 6.516 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.119 3.881 19 C -0.094 4.094 20 H 0.083 0.917 21 C 0.069 3.931 22 N -0.682 5.682 23 C 0.139 3.861 24 C 0.020 3.980 25 C -0.215 4.215 26 C -0.062 4.062 27 O 0.098 5.902 28 N -0.365 5.365 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.344 0.656 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.174 0.826 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 1.967 23.056 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.367 5.367 6 C 0.340 3.660 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.004 4.004 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.060 4.060 22 N -0.314 5.314 23 C 0.009 3.991 24 C -0.139 4.139 25 C -0.237 4.237 26 C -0.143 4.143 27 O 0.031 5.969 28 N -0.069 5.069 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.162 0.838 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.191 0.809 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.598 1.342 23.703 27.359 hybrid contribution -1.370 1.117 -1.715 2.463 sum -14.968 2.459 21.988 26.712 Atomic orbital electron populations 1.21749 0.93848 1.02222 1.02061 1.22314 0.95924 0.99757 0.94153 0.89658 1.22612 0.83484 0.98401 0.97376 1.48896 1.08360 1.68269 1.11211 1.19966 0.81563 0.76878 0.87612 1.90709 1.29490 1.46043 1.72713 1.23499 1.08095 1.03975 0.94104 1.85407 1.01979 1.87527 1.08534 1.22899 0.98142 1.51599 0.95551 0.90909 1.24998 0.94453 0.94939 0.99265 1.70035 1.00345 1.44872 1.35020 0.86115 0.78450 0.78366 0.82550 1.19627 1.20573 1.20573 1.21887 0.98673 0.98246 0.81611 1.22169 0.97420 0.97177 0.94588 0.89820 1.22062 0.98919 0.95015 0.90013 1.60429 1.44884 1.19517 1.06555 1.20167 1.00421 0.92268 0.86225 1.23515 0.91194 1.01853 0.97363 1.22795 0.98817 1.03320 0.98787 1.26048 0.87333 1.02348 0.98613 1.84825 1.16787 1.53809 1.41502 1.73836 1.20374 1.10168 1.02558 0.92424 0.92084 0.92265 0.91022 0.89851 0.89399 0.89408 0.92253 0.89550 0.92259 0.90148 0.94610 0.83791 0.88467 0.93370 0.80878 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.16 37.16 0.34 -0.54 16 2 C -0.10 -0.84 3.21 -88.75 -0.29 -1.13 16 3 H 0.09 0.73 7.86 -51.93 -0.41 0.33 16 4 C 0.10 1.13 6.40 -1.98 -0.01 1.12 16 5 N -0.63 -9.36 3.30 -169.54 -0.56 -9.92 16 6 C 0.55 10.96 7.91 -10.98 -0.09 10.88 16 7 O -0.52 -12.33 16.20 5.56 0.09 -12.24 16 8 C -0.15 -3.06 5.10 36.00 0.18 -2.87 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 14 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.12 1.49 6.44 -2.98 -0.02 1.47 16 19 C -0.09 -0.81 2.77 -89.25 -0.25 -1.05 16 20 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 21 C 0.07 0.55 4.76 -3.82 -0.02 0.53 16 22 N -0.68 -5.82 6.18 -115.06 -0.71 -6.53 16 23 C 0.14 1.12 6.27 -4.98 -0.03 1.09 16 24 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 25 C -0.22 -1.65 11.12 -39.39 -0.44 -2.09 16 26 C -0.06 -0.38 12.30 29.74 0.37 -0.02 16 27 O 0.10 0.87 11.20 17.17 0.19 1.06 16 28 N -0.37 -3.77 12.07 33.42 0.40 -3.37 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 33 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 34 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.70 7.91 -51.92 -0.41 1.29 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 1.26 7.48 -51.93 -0.39 0.87 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.34 2.85 8.72 -39.29 -0.34 2.51 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.22 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -36.01 391.47 -8.74 -44.76 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.94 Total: -0.63 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.61 Total: -6.02 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.13 Total: -45.37 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.28 Total: -11.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.01 -8.74 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105847708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.575 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds