Wall clock time and date at job start Wed Apr 1 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99743 * 2 1 4 4 C 1.50704 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80367 * 89.96984 * 4 3 2 6 6 C 1.30951 * 117.36029 * 179.72730 * 5 4 3 7 7 C 1.35664 * 114.18697 * 0.53272 * 6 5 4 8 8 C 1.46683 * 126.12651 * 179.78090 * 7 6 5 9 9 O 1.21690 * 120.00091 * 6.38609 * 8 7 6 10 10 N 1.34783 * 119.99925 * 186.38316 * 8 7 6 11 11 C 1.48116 * 127.03209 * 175.97788 * 10 8 7 12 12 C 1.54597 * 103.42105 * 219.28422 * 11 10 8 13 13 H 1.09000 * 110.57421 * 81.16430 * 12 11 10 14 14 C 1.53000 * 110.83408 * 204.44638 * 12 11 10 15 15 N 1.46499 * 109.46899 * 288.55691 * 14 12 11 16 16 C 1.36941 * 119.99930 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47071 * 59.99299 * 20 18 16 22 22 H 1.48497 * 109.47400 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47081 * 299.99840 * 20 18 16 24 24 C 1.54614 * 102.90974 * 322.86689 * 12 11 10 25 25 H 1.09000 * 110.41728 * 262.76249 * 24 12 11 26 26 C 1.53007 * 110.32748 * 140.59138 * 24 12 11 27 27 C 1.47477 * 127.03392 * 356.28682 * 10 8 7 28 28 S 1.70953 * 124.80046 * 269.99955 * 4 3 2 29 29 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46767 * 299.99826 * 1 2 3 31 31 H 1.08999 * 109.47560 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.47289 * 60.00259 * 3 2 1 33 33 H 1.09002 * 109.46758 * 300.00258 * 3 2 1 34 34 H 1.07994 * 122.90896 * 180.34993 * 6 5 4 35 35 H 1.09007 * 110.66244 * 337.76259 * 11 10 8 36 36 H 1.09001 * 110.66383 * 100.88431 * 11 10 8 37 37 H 1.09000 * 109.47443 * 48.55765 * 14 12 11 38 38 H 1.09006 * 109.47026 * 168.56178 * 14 12 11 39 39 H 0.97007 * 120.00392 * 0.02562 * 15 14 12 40 40 H 0.97000 * 119.99414 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46691 * 302.92414 * 26 24 12 42 42 H 1.08997 * 109.47052 * 62.92416 * 26 24 12 43 43 H 1.09001 * 109.47085 * 182.92524 * 26 24 12 44 44 H 1.09003 * 109.91252 * 273.88083 * 27 10 8 45 45 H 1.09005 * 109.91395 * 34.96467 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2484 1.1279 -1.0637 6 6 5.5434 1.0310 -0.8946 7 6 5.9331 0.9942 0.4043 8 6 7.3127 0.8845 0.8905 9 8 8.2405 0.9340 0.1047 10 7 7.5526 0.7291 2.2077 11 6 8.8678 0.5206 2.8563 12 6 8.5625 -0.5164 3.9615 13 1 8.5365 -1.5235 3.5452 14 6 9.5872 -0.4227 5.0937 15 7 10.8760 -0.9426 4.6302 16 6 11.9521 -0.9593 5.4769 17 1 11.8509 -0.5887 6.4862 18 6 13.1735 -1.4515 5.0375 19 7 13.2970 -1.9026 3.8072 20 14 14.6412 -1.4748 6.1927 21 1 14.3240 -2.3094 7.3793 22 1 15.8173 -2.0447 5.4874 23 1 14.9491 -0.0894 6.6300 24 6 7.1603 -0.0920 4.4555 25 1 7.2430 0.5242 5.3509 26 6 6.3003 -1.3256 4.7381 27 6 6.5588 0.7255 3.2973 28 16 4.4857 1.1093 1.4027 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 6.2405 0.9816 -1.7179 35 1 9.5891 0.1207 2.1435 36 1 9.2326 1.4499 3.2939 37 1 9.7024 0.6187 5.3943 38 1 9.2432 -1.0106 5.9448 39 1 10.9673 -1.2744 3.7232 40 1 14.1504 -2.2468 3.5004 41 1 6.2364 -1.9376 3.8385 42 1 6.7520 -1.9070 5.5418 43 1 5.2999 -1.0108 5.0352 44 1 6.3640 1.7466 3.6254 45 1 5.6333 0.2632 2.9541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107092733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:56 Heat of formation + Delta-G solvation = -14.091980 kcal Electronic energy + Delta-G solvation = -26730.834263 eV Core-core repulsion = 22876.066275 eV Total energy + Delta-G solvation = -3854.767989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47610 -39.83360 -38.30625 -37.76924 -34.72408 -32.97947 -31.94034 -31.41684 -29.57754 -28.58482 -26.84343 -26.45078 -25.58619 -24.22069 -23.25813 -21.64436 -21.17306 -20.05131 -19.09945 -18.70509 -17.16986 -17.10033 -16.81392 -16.41656 -16.04966 -15.95321 -15.37708 -14.90644 -14.70214 -14.45049 -14.14467 -14.06684 -13.63250 -13.40316 -13.16766 -13.06408 -13.01040 -12.86667 -12.41708 -12.31093 -11.98348 -11.96469 -11.80016 -11.35950 -11.16109 -10.86338 -10.66704 -10.54161 -10.46535 -10.36176 -10.16905 -10.08505 -9.87467 -9.73529 -9.64482 -9.34637 -8.88284 -8.71324 -6.93453 -5.75481 -3.05303 -0.11281 0.83005 1.25479 2.14334 2.77382 3.01740 3.24500 3.44710 3.48915 3.50497 3.87928 4.27756 4.39679 4.42007 4.57281 4.74776 4.76667 4.78120 4.82575 4.86069 4.91480 5.02496 5.16285 5.19443 5.26820 5.44389 5.45574 5.56924 5.68355 5.71508 5.78896 5.90123 5.98176 6.05893 6.11520 6.14339 6.35221 6.39612 6.48456 6.67493 6.79467 7.27219 7.41368 7.69282 7.97321 8.42501 9.53668 10.10297 10.44424 11.46966 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.002282 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.893501 B =12265.230900 C =13015.446678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.024 3.976 5 N -0.461 5.461 6 C 0.115 3.885 7 C -0.278 4.278 8 C 0.609 3.391 9 O -0.519 6.519 10 N -0.615 5.615 11 C 0.117 3.883 12 C -0.103 4.103 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.733 5.733 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.096 4.096 25 H 0.093 0.907 26 C -0.144 4.144 27 C 0.096 3.904 28 S 0.211 5.789 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.025 0.975 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.748 7.652 -3.782 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.250 4.250 5 N -0.176 5.176 6 C -0.043 4.043 7 C -0.403 4.403 8 C 0.396 3.604 9 O -0.397 6.397 10 N -0.349 5.349 11 C -0.004 4.004 12 C -0.122 4.122 13 H 0.104 0.896 14 C 0.038 3.962 15 N -0.377 5.377 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.115 4.115 25 H 0.111 0.889 26 C -0.201 4.201 27 C -0.029 4.029 28 S 0.468 5.532 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.595 7.588 -3.595 29.803 hybrid contribution 1.205 -0.009 -0.457 1.289 sum -27.390 7.579 -4.052 28.706 Atomic orbital electron populations 1.22825 0.79838 1.03468 1.00383 1.87977 1.20437 1.26127 1.95529 1.20820 0.84526 0.86208 1.02598 1.27288 1.00897 1.03273 0.93522 1.66207 1.04804 1.14965 1.31668 1.22184 0.90654 0.95858 0.95574 1.25912 0.98051 1.18318 0.97970 1.16263 0.85986 0.77263 0.80907 1.90890 1.43785 1.50820 1.54204 1.48697 1.10597 1.71002 1.04570 1.22594 0.83729 0.99294 0.94745 1.22555 0.93798 0.99435 0.96437 0.89566 1.20620 0.85667 0.96839 0.93103 1.42364 1.05459 1.75378 1.14520 1.19148 0.88756 1.34939 0.94551 0.91215 1.24761 0.97902 1.01669 0.96561 1.69653 1.24903 1.47484 1.15886 0.86264 0.82451 0.77603 0.79812 1.21295 1.21700 1.21265 1.22070 0.95297 0.97104 0.97057 0.88919 1.21863 0.98914 0.97037 1.02300 1.22488 0.91567 1.00917 0.87913 1.84138 0.95877 1.63812 1.09324 0.89005 0.93597 0.93537 0.90683 0.89942 0.79228 0.88875 0.90207 0.96005 0.95769 0.78185 0.93390 0.92552 0.91503 0.92565 0.90645 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.32 10.69 -35.23 -0.38 -3.70 16 3 C 0.14 1.01 6.51 36.01 0.23 1.24 16 4 C 0.02 0.25 7.01 -13.29 -0.09 0.15 16 5 N -0.46 -5.65 10.51 -11.50 -0.12 -5.77 16 6 C 0.12 1.45 11.10 -18.85 -0.21 1.24 16 7 C -0.28 -3.57 6.40 -37.09 -0.24 -3.81 16 8 C 0.61 9.51 7.85 -12.85 -0.10 9.41 16 9 O -0.52 -9.98 17.11 5.20 0.09 -9.90 16 10 N -0.62 -8.74 3.29 -171.51 -0.56 -9.30 16 11 C 0.12 1.88 6.42 -2.31 -0.01 1.87 16 12 C -0.10 -1.56 2.61 -88.93 -0.23 -1.79 16 13 H 0.09 1.42 7.86 -51.93 -0.41 1.02 16 14 C 0.17 3.10 5.58 -4.04 -0.02 3.08 16 15 N -0.73 -18.11 5.52 -59.91 -0.33 -18.44 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 C -0.10 -1.06 3.17 -89.25 -0.28 -1.35 16 25 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 26 C -0.14 -1.42 8.90 37.16 0.33 -1.09 16 27 C 0.10 1.02 5.48 -2.98 -0.02 1.00 16 28 S 0.21 1.98 18.87 -107.50 -2.03 -0.05 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.19 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.09 1.76 7.89 -51.93 -0.41 1.35 16 36 H 0.08 1.27 7.93 -51.93 -0.41 0.85 16 37 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.70 4.47 -29.98 -0.13 0.56 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -34.54 384.72 -8.31 -42.84 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.70 Total: 4.84 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 0.22 Total: 3.91 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.29 Total: -61.13 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.29 Total: -13.60 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.03 Total: -0.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.54 -8.31 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107092733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.751 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds