Wall clock time and date at job start Wed Apr 1 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99743 * 2 1 4 4 C 1.50704 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80367 * 89.96984 * 4 3 2 6 6 C 1.30951 * 117.36029 * 179.72730 * 5 4 3 7 7 C 1.35664 * 114.18697 * 0.53272 * 6 5 4 8 8 C 1.46683 * 126.12651 * 179.78090 * 7 6 5 9 9 O 1.21690 * 120.00091 * 6.38609 * 8 7 6 10 10 N 1.34783 * 119.99925 * 186.38316 * 8 7 6 11 11 C 1.48116 * 127.03209 * 175.97788 * 10 8 7 12 12 C 1.54597 * 103.42105 * 219.28422 * 11 10 8 13 13 H 1.09000 * 110.57421 * 81.16430 * 12 11 10 14 14 C 1.53000 * 110.83408 * 204.44638 * 12 11 10 15 15 N 1.46499 * 109.46899 * 288.55691 * 14 12 11 16 16 C 1.36941 * 119.99930 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47071 * 59.99299 * 20 18 16 22 22 H 1.48497 * 109.47400 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47081 * 299.99840 * 20 18 16 24 24 C 1.54614 * 102.90974 * 322.86689 * 12 11 10 25 25 H 1.09000 * 110.41728 * 262.76249 * 24 12 11 26 26 C 1.53007 * 110.32748 * 140.59138 * 24 12 11 27 27 C 1.47477 * 127.03392 * 356.28682 * 10 8 7 28 28 S 1.70953 * 124.80046 * 269.99955 * 4 3 2 29 29 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46767 * 299.99826 * 1 2 3 31 31 H 1.08999 * 109.47560 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.47289 * 60.00259 * 3 2 1 33 33 H 1.09002 * 109.46758 * 300.00258 * 3 2 1 34 34 H 1.07994 * 122.90896 * 180.34993 * 6 5 4 35 35 H 1.09007 * 110.66244 * 337.76259 * 11 10 8 36 36 H 1.09001 * 110.66383 * 100.88431 * 11 10 8 37 37 H 1.09000 * 109.47443 * 48.55765 * 14 12 11 38 38 H 1.09006 * 109.47026 * 168.56178 * 14 12 11 39 39 H 0.97007 * 120.00392 * 0.02562 * 15 14 12 40 40 H 0.97000 * 119.99414 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46691 * 302.92414 * 26 24 12 42 42 H 1.08997 * 109.47052 * 62.92416 * 26 24 12 43 43 H 1.09001 * 109.47085 * 182.92524 * 26 24 12 44 44 H 1.09003 * 109.91252 * 273.88083 * 27 10 8 45 45 H 1.09005 * 109.91395 * 34.96467 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2484 1.1279 -1.0637 6 6 5.5434 1.0310 -0.8946 7 6 5.9331 0.9942 0.4043 8 6 7.3127 0.8845 0.8905 9 8 8.2405 0.9340 0.1047 10 7 7.5526 0.7291 2.2077 11 6 8.8678 0.5206 2.8563 12 6 8.5625 -0.5164 3.9615 13 1 8.5365 -1.5235 3.5452 14 6 9.5872 -0.4227 5.0937 15 7 10.8760 -0.9426 4.6302 16 6 11.9521 -0.9593 5.4769 17 1 11.8509 -0.5887 6.4862 18 6 13.1735 -1.4515 5.0375 19 7 13.2970 -1.9026 3.8072 20 14 14.6412 -1.4748 6.1927 21 1 14.3240 -2.3094 7.3793 22 1 15.8173 -2.0447 5.4874 23 1 14.9491 -0.0894 6.6300 24 6 7.1603 -0.0920 4.4555 25 1 7.2430 0.5242 5.3509 26 6 6.3003 -1.3256 4.7381 27 6 6.5588 0.7255 3.2973 28 16 4.4857 1.1093 1.4027 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 6.2405 0.9816 -1.7179 35 1 9.5891 0.1207 2.1435 36 1 9.2326 1.4499 3.2939 37 1 9.7024 0.6187 5.3943 38 1 9.2432 -1.0106 5.9448 39 1 10.9673 -1.2744 3.7232 40 1 14.1504 -2.2468 3.5004 41 1 6.2364 -1.9376 3.8385 42 1 6.7520 -1.9070 5.5418 43 1 5.2999 -1.0108 5.0352 44 1 6.3640 1.7466 3.6254 45 1 5.6333 0.2632 2.9541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107092733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:55 Heat of formation + Delta-G solvation = -39.355000 kcal Electronic energy + Delta-G solvation = -26731.929750 eV Core-core repulsion = 22876.066275 eV Total energy + Delta-G solvation = -3855.863475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54819 -40.79505 -39.16182 -38.68095 -36.48856 -34.34034 -33.08692 -32.73126 -30.90502 -29.58533 -27.61653 -27.29707 -26.87061 -25.30185 -24.71236 -22.93217 -22.23452 -21.26160 -20.02006 -19.72471 -19.01431 -17.89657 -17.63201 -17.45098 -17.15168 -16.58224 -16.55816 -16.20278 -15.81756 -15.58033 -15.36751 -15.18362 -15.02550 -14.90682 -14.42899 -14.20629 -13.72985 -13.66995 -13.54154 -13.33058 -13.21165 -12.92860 -12.72827 -12.70400 -12.45042 -12.37314 -12.20864 -11.95416 -11.85234 -11.65204 -11.51701 -11.37920 -10.91560 -10.83885 -10.74034 -10.56828 -10.24261 -9.81329 -8.98723 -7.93326 -5.22657 -0.99987 -0.00300 0.39914 1.19351 1.47704 1.51106 1.57217 1.64204 1.93801 2.57065 2.63020 3.17704 3.31210 3.40481 3.42709 3.64662 3.76918 3.80452 4.06907 4.09034 4.18708 4.23651 4.32128 4.36385 4.44229 4.49305 4.54691 4.56236 4.61422 4.73626 4.77018 4.84746 4.87428 4.92035 4.96568 5.05733 5.17567 5.24617 5.33414 5.48912 5.52568 6.05893 6.23534 6.27931 6.46688 6.78735 7.34034 8.10744 8.31721 9.30134 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.002282 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.893501 B =12265.230900 C =13015.446678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.022 3.978 5 N -0.487 5.487 6 C 0.114 3.886 7 C -0.312 4.312 8 C 0.605 3.395 9 O -0.573 6.573 10 N -0.614 5.614 11 C 0.120 3.880 12 C -0.093 4.093 13 H 0.067 0.933 14 C 0.165 3.835 15 N -0.749 5.749 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.975 3.025 21 H -0.275 1.275 22 H -0.300 1.300 23 H -0.277 1.277 24 C -0.085 4.085 25 H 0.116 0.884 26 C -0.143 4.143 27 C 0.093 3.907 28 S 0.287 5.713 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.185 0.815 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.151 8.782 -1.219 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.054 3.946 4 C -0.251 4.251 5 N -0.203 5.203 6 C -0.045 4.045 7 C -0.436 4.436 8 C 0.393 3.607 9 O -0.454 6.454 10 N -0.346 5.346 11 C -0.002 4.002 12 C -0.113 4.113 13 H 0.086 0.914 14 C 0.039 3.961 15 N -0.391 5.391 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.203 1.203 24 C -0.104 4.104 25 H 0.134 0.866 26 C -0.200 4.200 27 C -0.030 4.030 28 S 0.546 5.454 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.201 0.799 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -32.084 8.740 -0.952 33.267 hybrid contribution 2.091 -0.339 -1.226 2.448 sum -29.993 8.401 -2.178 31.223 Atomic orbital electron populations 1.23024 0.77942 1.04281 1.01786 1.87922 1.22539 1.26834 1.95834 1.21089 0.82445 0.86283 1.04751 1.27973 1.02494 1.01033 0.93571 1.66281 1.04517 1.16599 1.32890 1.22215 0.91152 0.95475 0.95704 1.25666 0.98172 1.20636 0.99156 1.16665 0.86757 0.76394 0.80854 1.90847 1.45724 1.53282 1.55542 1.48720 1.10679 1.70242 1.04989 1.22386 0.84196 0.99418 0.94228 1.22365 0.95755 0.98213 0.94991 0.91420 1.20804 0.83969 0.96879 0.94441 1.42639 1.07191 1.75574 1.13708 1.19628 0.89518 1.33036 0.95154 0.90070 1.25628 1.00981 1.02542 0.98132 1.69837 1.25059 1.49505 1.17961 0.85187 0.78620 0.77901 0.77902 1.20122 1.22640 1.20268 1.22086 0.92330 0.98134 0.97868 0.86585 1.21878 1.00310 0.96100 1.01708 1.22784 0.90985 1.02826 0.86425 1.83622 0.92545 1.62095 1.07176 0.88602 0.91611 0.92697 0.87230 0.89111 0.79855 0.93002 0.89963 0.94942 0.94710 0.79801 0.94186 0.93617 0.92019 0.89279 0.87608 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -6.08 10.69 -148.98 -1.59 -7.67 16 3 C 0.13 1.53 6.51 71.24 0.46 2.00 16 4 C 0.02 0.41 7.01 88.46 0.62 1.03 16 5 N -0.49 -11.61 10.51 -190.30 -2.00 -13.61 16 6 C 0.11 2.93 11.10 84.23 0.93 3.87 16 7 C -0.31 -7.94 6.40 23.88 0.15 -7.78 16 8 C 0.60 19.52 7.85 86.45 0.68 20.20 16 9 O -0.57 -23.68 17.11 -4.32 -0.07 -23.76 16 10 N -0.61 -17.35 3.29 -814.77 -2.68 -20.04 16 11 C 0.12 3.97 6.42 86.61 0.56 4.53 16 12 C -0.09 -2.81 2.61 -9.70 -0.03 -2.83 16 13 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 14 C 0.17 6.06 5.58 86.38 0.48 6.55 16 15 N -0.75 -37.64 5.52 -343.44 -1.90 -39.54 16 16 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 20 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.08 -1.63 3.17 -9.90 -0.03 -1.66 16 25 H 0.12 1.79 7.85 -2.39 -0.02 1.77 16 26 C -0.14 -2.34 8.90 71.98 0.64 -1.70 16 27 C 0.09 1.70 5.48 86.53 0.47 2.17 16 28 S 0.29 4.54 18.87 -56.49 -1.07 3.47 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.18 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.05 2.13 7.89 -2.38 -0.02 2.11 16 36 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 37 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.37 20.46 7.67 -92.70 -0.71 19.75 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.34 4.47 -16.34 -0.07 1.27 16 Total: -1.00 -78.80 384.72 0.73 -78.07 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.23 Total: 24.43 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.50 Total: 10.99 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -6.30 Total: -134.10 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.67 Total: -31.43 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.07 Total: 3.47 kcal Total: -78.80 0.73 -78.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107092733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds