Wall clock time and date at job start Wed Apr 1 2020 00:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 117.00238 * 2 1 4 4 C 1.37572 * 120.82587 * 179.97438 * 3 2 1 5 5 C 1.38042 * 114.24867 * 180.02562 * 4 3 2 6 6 C 1.47107 * 127.75940 * 179.97438 * 5 4 3 7 7 O 1.21636 * 119.99986 * 318.53244 * 6 5 4 8 8 N 1.34777 * 120.00359 * 138.52846 * 6 5 4 9 9 C 1.46926 * 120.62572 * 3.35801 * 8 6 5 10 10 C 1.52763 * 109.00873 * 233.58242 * 9 8 6 11 11 C 1.53041 * 109.38353 * 305.59185 * 10 9 8 12 12 H 1.08999 * 109.45785 * 301.21997 * 11 10 9 13 13 C 1.52996 * 109.45015 * 181.25177 * 11 10 9 14 14 C 1.53045 * 109.53970 * 61.23617 * 11 10 9 15 15 H 1.08994 * 109.49389 * 58.58690 * 14 11 10 16 16 C 1.53000 * 109.52275 * 178.67114 * 14 11 10 17 17 N 1.46497 * 109.46929 * 184.85801 * 16 14 11 18 18 C 1.36934 * 120.00104 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00155 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00395 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99555 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46980 * 59.99781 * 22 20 18 24 24 H 1.48497 * 109.47205 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46999 * 299.99467 * 22 20 18 26 26 C 1.46927 * 120.63492 * 183.63544 * 8 6 5 27 27 S 1.77231 * 104.48103 * 359.97438 * 5 4 3 28 28 N 1.30357 * 120.82602 * 359.72570 * 3 2 1 29 29 H 1.09003 * 109.46948 * 59.99552 * 1 2 3 30 30 H 1.09005 * 109.46869 * 300.00182 * 1 2 3 31 31 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 32 32 H 1.07998 * 122.87591 * 0.02562 * 4 3 2 33 33 H 1.08993 * 109.59019 * 353.41425 * 9 8 6 34 34 H 1.09000 * 109.58668 * 113.84475 * 9 8 6 35 35 H 1.08992 * 109.56651 * 185.55446 * 10 9 8 36 36 H 1.08999 * 109.38596 * 65.51527 * 10 9 8 37 37 H 1.09000 * 109.47561 * 299.93601 * 13 11 10 38 38 H 1.09001 * 109.47504 * 59.93736 * 13 11 10 39 39 H 1.09007 * 109.47304 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47017 * 304.85115 * 16 14 11 41 41 H 1.08996 * 109.47389 * 64.85449 * 16 14 11 42 42 H 0.97002 * 120.00015 * 359.97438 * 17 16 14 43 43 H 0.96996 * 119.99957 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58821 * 246.15604 * 26 8 6 45 45 H 1.09002 * 109.58654 * 6.58324 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 0.0005 5 6 3.9007 2.5968 0.0010 6 6 5.3050 3.0351 0.0022 7 8 6.1202 2.4628 0.7003 8 7 5.6884 4.0708 -0.7704 9 6 4.7027 4.8186 -1.5628 10 6 5.1586 4.8525 -3.0204 11 6 6.5809 5.4127 -3.0948 12 1 6.5996 6.4143 -2.6653 13 6 7.0275 5.4766 -4.5568 14 6 7.5306 4.5040 -2.3108 15 1 7.4937 3.4962 -2.7243 16 6 8.9577 5.0461 -2.4130 17 7 9.8816 4.1148 -1.7610 18 6 11.2222 4.3919 -1.7264 19 1 11.5984 5.2970 -2.1801 20 6 12.0977 3.5097 -1.1082 21 7 11.6391 2.4070 -0.5548 22 14 13.9264 3.8875 -1.0616 23 1 14.1486 5.1716 -0.3495 24 1 14.6392 2.7970 -0.3489 25 1 14.4452 3.9945 -2.4489 26 6 7.1007 4.4697 -0.8409 27 16 2.4473 3.6110 0.0000 28 7 1.3522 2.3149 -0.0054 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0644 0.4373 0.0006 33 1 3.7320 4.3274 -1.4965 34 1 4.6257 5.8374 -1.1832 35 1 4.4870 5.4873 -3.5983 36 1 5.1441 3.8416 -3.4277 37 1 7.0094 4.4749 -4.9864 38 1 6.3513 6.1237 -5.1154 39 1 8.0404 5.8759 -4.6102 40 1 9.2311 5.1540 -3.4627 41 1 9.0135 6.0172 -1.9213 42 1 9.5437 3.3021 -1.3532 43 1 12.2508 1.7907 -0.1225 44 1 7.2232 5.4595 -0.4011 45 1 7.7117 3.7483 -0.2983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132831189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:00 Heat of formation + Delta-G solvation = -9.499712 kcal Electronic energy + Delta-G solvation = -27379.115500 eV Core-core repulsion = 23524.546647 eV Total energy + Delta-G solvation = -3854.568853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62292 -40.16355 -38.12726 -36.67605 -35.09335 -33.78060 -32.09141 -31.52043 -29.87142 -28.69846 -28.07682 -26.09702 -24.78809 -23.38213 -23.18572 -21.57210 -21.27265 -19.85685 -19.31852 -18.59616 -17.93782 -17.04366 -16.69129 -16.38932 -16.17300 -15.32220 -15.00690 -14.87222 -14.62613 -14.29399 -13.99324 -13.76771 -13.72470 -13.60911 -13.23143 -13.07869 -12.72037 -12.55373 -12.36614 -11.98150 -11.80348 -11.70719 -11.66728 -11.38874 -11.10885 -11.01194 -10.86845 -10.81869 -10.64741 -10.37584 -10.23989 -10.14745 -9.96044 -9.86012 -9.59012 -8.84612 -8.66321 -8.58990 -6.87541 -5.70464 -3.00276 -0.06045 0.77777 1.22341 1.98606 2.45422 2.86521 3.04287 3.47338 3.51446 3.53096 4.12753 4.49782 4.58527 4.63766 4.76236 4.79495 4.84704 4.88300 4.97482 5.07384 5.17983 5.20143 5.28417 5.39577 5.57270 5.60641 5.64781 5.66939 5.74857 5.79068 5.87284 5.89900 5.99476 6.11177 6.19522 6.29331 6.40979 6.48418 6.52502 6.68701 6.78805 6.86804 7.23397 7.73405 7.95269 8.47299 9.58213 10.15781 10.49730 11.51758 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002765 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.406074 B =10125.343045 C =11319.758762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.312 3.688 4 C -0.138 4.138 5 C -0.168 4.168 6 C 0.586 3.414 7 O -0.500 6.500 8 N -0.597 5.597 9 C 0.092 3.908 10 C -0.127 4.127 11 C -0.085 4.085 12 H 0.073 0.927 13 C -0.148 4.148 14 C -0.103 4.103 15 H 0.076 0.924 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.121 3.879 27 S 0.291 5.709 28 N -0.524 5.524 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 2.858 -3.198 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.098 3.902 4 C -0.174 4.174 5 C -0.299 4.299 6 C 0.370 3.630 7 O -0.375 6.375 8 N -0.330 5.330 9 C -0.032 4.032 10 C -0.165 4.165 11 C -0.104 4.104 12 H 0.092 0.908 13 C -0.205 4.205 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.000 4.000 27 S 0.441 5.559 28 N -0.364 5.364 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.939 3.924 -2.812 26.384 hybrid contribution 1.553 -1.507 0.148 2.169 sum -24.386 2.417 -2.663 24.650 Atomic orbital electron populations 1.22990 0.76649 1.03686 1.02555 1.86327 1.23041 1.22560 1.88059 1.19880 0.89713 0.85280 0.95337 1.20754 0.92489 0.98448 1.05751 1.26064 0.99656 0.97726 1.06490 1.16758 0.84595 0.80557 0.81075 1.90948 1.51587 1.54655 1.40307 1.48043 1.09874 1.30949 1.44129 1.22092 0.91725 0.97157 0.92265 1.21895 0.97327 1.02338 0.94971 1.21107 0.93510 0.99291 0.96486 0.90843 1.21878 1.01791 1.01759 0.95072 1.21742 0.96082 1.00252 0.94149 0.90583 1.20719 0.86601 0.93232 0.96342 1.42407 1.03576 1.24190 1.67614 1.19141 0.83489 1.04311 1.30419 0.91297 1.24755 0.97979 0.97069 1.01065 1.69660 1.33951 1.12064 1.42104 0.86286 0.85495 0.77058 0.77428 1.21303 1.21722 1.21344 1.21874 0.78462 1.01949 0.97670 1.85019 0.89312 1.12042 1.69546 1.76404 1.27102 1.01399 1.31532 0.92087 0.92099 0.87934 0.80513 0.90139 0.90315 0.90432 0.91324 0.92739 0.93148 0.91531 0.95401 0.96296 0.78139 0.93418 0.90888 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.31 16 2 O -0.29 -3.06 10.51 -19.64 -0.21 -3.27 16 3 C 0.31 3.55 7.36 -18.42 -0.14 3.42 16 4 C -0.14 -1.64 10.26 -39.90 -0.41 -2.05 16 5 C -0.17 -2.08 5.82 -36.06 -0.21 -2.29 16 6 C 0.59 8.94 7.64 -12.66 -0.10 8.84 16 7 O -0.50 -9.82 16.53 5.25 0.09 -9.73 16 8 N -0.60 -8.07 2.98 -174.42 -0.52 -8.59 16 9 C 0.09 0.90 5.95 -3.93 -0.02 0.87 16 10 C -0.13 -1.20 5.34 -26.83 -0.14 -1.34 16 11 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 12 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.15 -1.63 8.81 37.16 0.33 -1.30 16 14 C -0.10 -1.58 1.92 -90.50 -0.17 -1.75 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 17 N -0.73 -18.43 5.38 -59.91 -0.32 -18.75 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.12 1.93 5.51 -3.71 -0.02 1.91 16 27 S 0.29 2.92 20.78 -107.50 -2.23 0.68 16 28 N -0.52 -5.89 11.03 29.19 0.32 -5.57 16 29 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.08 0.71 3.87 -29.48 -0.11 0.60 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.81 6.30 -51.92 -0.33 0.48 16 40 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 10.36 6.89 -40.82 -0.28 10.08 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.11 2.15 6.22 -51.93 -0.32 1.83 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -33.46 374.62 -8.23 -41.69 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.41 Total: 6.14 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.30 Total: 2.08 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.20 Total: -60.86 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.12 Total: -13.00 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.23 Total: 0.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.46 -8.23 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.189 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds