Wall clock time and date at job start Wed Apr 1 2020 00:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 117.00238 * 2 1 4 4 C 1.37572 * 120.82587 * 179.97438 * 3 2 1 5 5 C 1.38042 * 114.24867 * 180.02562 * 4 3 2 6 6 C 1.47107 * 127.75940 * 179.97438 * 5 4 3 7 7 O 1.21636 * 119.99986 * 318.53244 * 6 5 4 8 8 N 1.34777 * 120.00359 * 138.52846 * 6 5 4 9 9 C 1.46926 * 120.62572 * 3.35801 * 8 6 5 10 10 C 1.52763 * 109.00873 * 233.58242 * 9 8 6 11 11 C 1.53041 * 109.38353 * 305.59185 * 10 9 8 12 12 H 1.08999 * 109.45785 * 301.21997 * 11 10 9 13 13 C 1.52996 * 109.45015 * 181.25177 * 11 10 9 14 14 C 1.53045 * 109.53970 * 61.23617 * 11 10 9 15 15 H 1.08994 * 109.49389 * 58.58690 * 14 11 10 16 16 C 1.53000 * 109.52275 * 178.67114 * 14 11 10 17 17 N 1.46497 * 109.46929 * 184.85801 * 16 14 11 18 18 C 1.36934 * 120.00104 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00155 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00395 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99555 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46980 * 59.99781 * 22 20 18 24 24 H 1.48497 * 109.47205 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46999 * 299.99467 * 22 20 18 26 26 C 1.46927 * 120.63492 * 183.63544 * 8 6 5 27 27 S 1.77231 * 104.48103 * 359.97438 * 5 4 3 28 28 N 1.30357 * 120.82602 * 359.72570 * 3 2 1 29 29 H 1.09003 * 109.46948 * 59.99552 * 1 2 3 30 30 H 1.09005 * 109.46869 * 300.00182 * 1 2 3 31 31 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 32 32 H 1.07998 * 122.87591 * 0.02562 * 4 3 2 33 33 H 1.08993 * 109.59019 * 353.41425 * 9 8 6 34 34 H 1.09000 * 109.58668 * 113.84475 * 9 8 6 35 35 H 1.08992 * 109.56651 * 185.55446 * 10 9 8 36 36 H 1.08999 * 109.38596 * 65.51527 * 10 9 8 37 37 H 1.09000 * 109.47561 * 299.93601 * 13 11 10 38 38 H 1.09001 * 109.47504 * 59.93736 * 13 11 10 39 39 H 1.09007 * 109.47304 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47017 * 304.85115 * 16 14 11 41 41 H 1.08996 * 109.47389 * 64.85449 * 16 14 11 42 42 H 0.97002 * 120.00015 * 359.97438 * 17 16 14 43 43 H 0.96996 * 119.99957 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58821 * 246.15604 * 26 8 6 45 45 H 1.09002 * 109.58654 * 6.58324 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 0.0005 5 6 3.9007 2.5968 0.0010 6 6 5.3050 3.0351 0.0022 7 8 6.1202 2.4628 0.7003 8 7 5.6884 4.0708 -0.7704 9 6 4.7027 4.8186 -1.5628 10 6 5.1586 4.8525 -3.0204 11 6 6.5809 5.4127 -3.0948 12 1 6.5996 6.4143 -2.6653 13 6 7.0275 5.4766 -4.5568 14 6 7.5306 4.5040 -2.3108 15 1 7.4937 3.4962 -2.7243 16 6 8.9577 5.0461 -2.4130 17 7 9.8816 4.1148 -1.7610 18 6 11.2222 4.3919 -1.7264 19 1 11.5984 5.2970 -2.1801 20 6 12.0977 3.5097 -1.1082 21 7 11.6391 2.4070 -0.5548 22 14 13.9264 3.8875 -1.0616 23 1 14.1486 5.1716 -0.3495 24 1 14.6392 2.7970 -0.3489 25 1 14.4452 3.9945 -2.4489 26 6 7.1007 4.4697 -0.8409 27 16 2.4473 3.6110 0.0000 28 7 1.3522 2.3149 -0.0054 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0644 0.4373 0.0006 33 1 3.7320 4.3274 -1.4965 34 1 4.6257 5.8374 -1.1832 35 1 4.4870 5.4873 -3.5983 36 1 5.1441 3.8416 -3.4277 37 1 7.0094 4.4749 -4.9864 38 1 6.3513 6.1237 -5.1154 39 1 8.0404 5.8759 -4.6102 40 1 9.2311 5.1540 -3.4627 41 1 9.0135 6.0172 -1.9213 42 1 9.5437 3.3021 -1.3532 43 1 12.2508 1.7907 -0.1225 44 1 7.2232 5.4595 -0.4011 45 1 7.7117 3.7483 -0.2983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132831189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:59 Heat of formation + Delta-G solvation = -34.041549 kcal Electronic energy + Delta-G solvation = -27380.179714 eV Core-core repulsion = 23524.546647 eV Total energy + Delta-G solvation = -3855.633067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65218 -41.10146 -39.31461 -37.53666 -36.67934 -35.18322 -33.57265 -32.65112 -31.44598 -29.60482 -28.89852 -27.55627 -25.94048 -24.92426 -24.27764 -22.62030 -22.52590 -21.02979 -20.30392 -19.58306 -19.08562 -18.75292 -17.67100 -17.29448 -17.22131 -16.73060 -16.43058 -15.81165 -15.72402 -15.56567 -15.31311 -15.19046 -14.75469 -14.59892 -14.41331 -14.34089 -14.04474 -13.99230 -13.17525 -13.04265 -12.98022 -12.75437 -12.67981 -12.66184 -12.56260 -12.22272 -12.17112 -12.05925 -11.93683 -11.88853 -11.78466 -11.49953 -11.22491 -11.09870 -10.89934 -10.88712 -9.82293 -9.38815 -8.96851 -7.92149 -5.21896 -1.01334 -0.12678 0.37346 1.05243 1.40405 1.46727 1.50594 1.56739 1.80060 2.17821 2.57384 3.16365 3.40838 3.59023 3.68505 3.75349 3.83645 3.98672 4.06014 4.20547 4.22213 4.29434 4.35708 4.37313 4.47964 4.51242 4.59192 4.71028 4.73208 4.77776 4.82126 4.92715 4.96338 4.97872 5.07911 5.14474 5.25546 5.26412 5.35769 5.50179 5.50826 5.60041 5.92753 6.12013 6.28634 6.79066 7.34301 8.11732 8.32898 9.31115 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002765 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.406074 B =10125.343045 C =11319.758762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.309 3.691 4 C -0.141 4.141 5 C -0.188 4.188 6 C 0.584 3.416 7 O -0.560 6.560 8 N -0.591 5.591 9 C 0.085 3.915 10 C -0.121 4.121 11 C -0.078 4.078 12 H 0.091 0.909 13 C -0.146 4.146 14 C -0.090 4.090 15 H 0.052 0.948 16 C 0.157 3.843 17 N -0.748 5.748 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.128 3.872 27 S 0.355 5.645 28 N -0.531 5.531 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.084 0.916 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.535 5.218 -4.660 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.212 6.212 3 C 0.096 3.904 4 C -0.179 4.179 5 C -0.320 4.320 6 C 0.369 3.631 7 O -0.439 6.439 8 N -0.322 5.322 9 C -0.037 4.037 10 C -0.159 4.159 11 C -0.097 4.097 12 H 0.109 0.891 13 C -0.203 4.203 14 C -0.109 4.109 15 H 0.071 0.929 16 C 0.031 3.969 17 N -0.391 5.391 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.006 3.994 27 S 0.505 5.495 28 N -0.373 5.373 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.191 0.809 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.364 6.359 -4.335 29.389 hybrid contribution 2.163 -2.176 0.558 3.118 sum -26.201 4.183 -3.777 26.800 Atomic orbital electron populations 1.23259 0.74863 1.05582 1.02683 1.86324 1.24837 1.22135 1.87859 1.19757 0.89400 0.85718 0.95556 1.20818 0.93051 0.98399 1.05596 1.25728 0.99165 0.98965 1.08098 1.17132 0.85374 0.80204 0.80371 1.90915 1.53540 1.56597 1.42863 1.48094 1.09583 1.30676 1.43864 1.22465 0.90982 0.98130 0.92129 1.21902 0.96483 1.02574 0.94958 1.21102 0.93528 0.98986 0.96094 0.89078 1.21855 1.01686 1.01821 0.94910 1.21592 0.95030 0.99945 0.94368 0.92939 1.20922 0.87756 0.92397 0.95849 1.42676 1.03766 1.24700 1.67955 1.19620 0.84881 1.04097 1.28892 0.90262 1.25632 1.02618 0.97238 1.01700 1.69854 1.35146 1.13387 1.43883 0.85190 0.79990 0.76742 0.77715 1.20212 1.22528 1.20166 1.21578 0.79494 1.00873 0.97483 1.84712 0.86590 1.10193 1.68005 1.76329 1.27676 1.01832 1.31417 0.91768 0.92056 0.85280 0.80929 0.88971 0.87431 0.86474 0.92322 0.93671 0.90135 0.93039 0.94743 0.95495 0.79809 0.94189 0.89768 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.43 113.37 1.18 1.56 16 2 O -0.31 -6.07 10.51 -93.17 -0.98 -7.05 16 3 C 0.31 6.76 7.36 84.75 0.62 7.38 16 4 C -0.14 -3.39 10.26 22.07 0.23 -3.16 16 5 C -0.19 -4.63 5.82 24.55 0.14 -4.48 16 6 C 0.58 18.47 7.64 86.57 0.66 19.13 16 7 O -0.56 -23.77 16.53 -4.14 -0.07 -23.84 16 8 N -0.59 -15.89 2.98 -823.98 -2.45 -18.34 16 9 C 0.09 1.41 5.95 86.22 0.51 1.93 16 10 C -0.12 -1.86 5.34 30.53 0.16 -1.70 16 11 C -0.08 -1.58 2.23 -10.77 -0.02 -1.60 16 12 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 13 C -0.15 -2.82 8.81 71.98 0.63 -2.18 16 14 C -0.09 -2.77 1.92 -10.71 -0.02 -2.79 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.16 6.06 5.41 86.38 0.47 6.53 16 17 N -0.75 -38.92 5.38 -343.45 -1.85 -40.76 16 18 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 21 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 22 Si 0.97 47.36 29.55 68.60 2.03 49.38 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 C 0.13 4.19 5.51 86.36 0.48 4.66 16 27 S 0.35 6.27 20.78 -56.49 -1.17 5.10 16 28 N -0.53 -10.90 11.03 -175.21 -1.93 -12.84 16 29 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 31 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.09 1.33 3.87 -16.67 -0.06 1.27 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.15 6.30 -2.38 -0.02 1.14 16 40 H 0.03 1.31 6.15 -2.38 -0.01 1.30 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.37 21.19 6.89 -92.71 -0.64 20.56 16 43 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.06 2.52 6.22 -2.39 -0.01 2.50 16 Total: -1.00 -76.74 374.62 0.53 -76.21 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.32 Total: 26.29 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.35 Total: 8.00 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -5.95 Total: -134.10 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.05 Total: -30.89 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -1.17 Total: 5.10 kcal Total: -76.74 0.53 -76.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.169 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds