Wall clock time and date at job start Wed Apr 1 2020 00:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46826 * 221.22984 * 3 2 1 5 5 C 1.34780 * 119.99809 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00221 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99721 * 180.02562 * 5 4 3 8 8 N 1.46895 * 109.46829 * 179.97438 * 7 5 4 9 9 C 1.46905 * 111.00039 * 179.97438 * 8 7 5 10 10 H 1.08994 * 110.78016 * 323.21905 * 9 8 7 11 11 C 1.55158 * 110.71730 * 86.45133 * 9 8 7 12 12 C 1.54910 * 101.58312 * 153.86716 * 11 9 8 13 13 N 1.47428 * 104.83146 * 322.99212 * 12 11 9 14 14 C 1.34771 * 125.64926 * 204.09333 * 13 12 11 15 15 O 1.21288 * 119.99896 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00048 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.46826 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99509 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00431 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.27840 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71945 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72142 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72250 * 22 20 18 26 26 C 1.47023 * 108.70192 * 24.35086 * 13 12 11 27 27 H 1.09003 * 109.87997 * 118.13077 * 26 13 12 28 28 C 1.52997 * 109.88662 * 239.29592 * 26 13 12 29 29 H 4.40645 * 5.51439 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47405 * 101.23004 * 3 2 1 31 31 H 1.09002 * 109.47086 * 341.22472 * 3 2 1 32 32 H 0.97001 * 120.00387 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.47159 * 59.99635 * 7 5 4 34 34 H 1.09002 * 109.46912 * 299.99360 * 7 5 4 35 35 H 1.00896 * 111.00200 * 56.04270 * 8 7 5 36 36 H 1.09005 * 111.00475 * 35.79410 * 11 9 8 37 37 H 1.08996 * 111.00833 * 271.94324 * 11 9 8 38 38 H 1.08998 * 110.36610 * 204.15436 * 12 11 9 39 39 H 1.08996 * 110.36735 * 81.82743 * 12 11 9 40 40 H 1.09000 * 109.46926 * 60.00592 * 16 14 13 41 41 H 1.09001 * 109.47144 * 300.00330 * 16 14 13 42 42 H 0.97005 * 119.99723 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.46700 * 58.54779 * 28 26 13 44 44 H 1.09002 * 109.47356 * 178.54853 * 28 26 13 45 45 H 1.08996 * 109.47236 * 298.54782 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0397 0.9104 5 6 4.4588 1.2259 1.0723 6 8 5.2472 0.5330 0.4648 7 6 4.9606 2.2943 2.0092 8 7 6.4295 2.2951 2.0092 9 6 6.9555 3.3268 2.9130 10 1 6.3317 4.2201 2.8849 11 6 7.0687 2.7818 4.3613 12 6 8.1983 3.6698 4.9404 13 7 9.1423 3.8557 3.8234 14 6 10.4525 4.1480 3.9427 15 8 11.1372 4.2797 2.9502 16 6 11.0668 4.3113 5.3091 17 16 12.8266 4.6981 5.1371 18 6 13.2779 4.8310 6.8351 19 1 12.5352 4.6809 7.6047 20 6 14.5881 5.1287 7.1837 21 7 15.4934 5.3112 6.2458 22 14 15.0682 5.2620 8.9840 23 1 14.8967 6.6650 9.4395 24 1 14.2021 4.3689 9.7948 25 1 16.4877 4.8581 9.1490 26 6 8.4163 3.6756 2.5577 27 1 8.4485 4.5978 1.9774 28 6 9.0418 2.5316 1.7572 29 1 -1.0503 -0.0001 -0.0004 30 1 3.0093 0.2009 -1.0079 31 1 3.0097 -0.9722 0.3308 32 1 2.5032 1.5941 1.3960 33 1 4.5977 2.0933 3.0172 34 1 4.5964 3.2672 1.6791 35 1 6.7910 2.4149 1.0748 36 1 7.3587 1.7310 4.3618 37 1 6.1373 2.9286 4.9080 38 1 8.6894 3.1645 5.7720 39 1 7.7977 4.6309 5.2626 40 1 10.9513 3.3853 5.8723 41 1 10.5667 5.1229 5.8376 42 1 16.4091 5.5189 6.4894 43 1 9.0108 1.6157 2.3475 44 1 8.4829 2.3870 0.8326 45 1 10.0772 2.7769 1.5212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:03 Heat of formation + Delta-G solvation = 0.959180 kcal Electronic energy + Delta-G solvation = -25910.012821 eV Core-core repulsion = 22055.897500 eV Total energy + Delta-G solvation = -3854.115321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43388 -39.88993 -37.71301 -36.04149 -34.93321 -33.15603 -32.40813 -31.65003 -30.93539 -29.01153 -27.98952 -26.09975 -25.47001 -24.79304 -22.98136 -21.07254 -20.30569 -19.34067 -18.97126 -17.74274 -17.42856 -16.82190 -16.56517 -16.43997 -16.05507 -15.59974 -15.15438 -14.78917 -14.70085 -14.58548 -14.12186 -13.98040 -13.69390 -13.67548 -13.35696 -13.15106 -12.65743 -12.54902 -12.40369 -12.35366 -11.83839 -11.64208 -11.54383 -11.43433 -11.09083 -11.06933 -11.04472 -10.99726 -10.76052 -10.73674 -10.24252 -9.79286 -9.63280 -9.28786 -9.04595 -8.86401 -8.46781 -8.20414 -6.47508 -6.19561 -3.89901 1.78093 2.12930 2.22109 2.80239 2.98136 3.11641 3.23640 3.27355 3.31790 3.61872 3.65169 3.84285 4.16629 4.22896 4.29982 4.45568 4.72464 4.82590 4.86854 4.96080 5.00507 5.04891 5.09750 5.15566 5.24419 5.25173 5.40059 5.46076 5.54931 5.58330 5.68558 5.76121 5.77642 5.90726 5.99586 6.15076 6.17251 6.42783 6.51469 6.62688 6.87215 6.90091 6.99863 7.61442 7.72762 7.73415 8.37214 8.61966 9.25657 10.87870 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.001676 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.960684 B =16705.350066 C =17138.509261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.514 3.486 6 O -0.518 6.518 7 C 0.041 3.959 8 N -0.659 5.659 9 C 0.077 3.923 10 H 0.062 0.938 11 C -0.121 4.121 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.550 3.450 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.272 1.272 25 H -0.282 1.282 26 C 0.139 3.861 27 H 0.072 0.928 28 C -0.155 4.155 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.356 0.644 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.190 -6.948 -8.310 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.109 3.891 4 N -0.388 5.388 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.091 4.091 8 N -0.295 5.295 9 C -0.033 4.033 10 H 0.080 0.920 11 C -0.160 4.160 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.339 3.661 15 O -0.387 6.387 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.207 1.207 26 C 0.034 3.966 27 H 0.090 0.910 28 C -0.214 4.214 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.180 0.820 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -30.198 -7.711 -9.834 32.682 hybrid contribution -1.401 1.004 2.114 2.728 sum -31.599 -6.707 -7.720 33.213 Atomic orbital electron populations 1.25078 0.95999 0.98579 0.99045 1.22925 0.94274 1.02119 1.01868 1.18054 0.83068 0.92761 0.95233 1.45976 1.07404 1.38177 1.47270 1.20645 0.81590 0.85065 0.82680 1.90762 1.54868 1.46621 1.46914 1.21836 0.90782 0.96370 1.00151 1.60407 1.04300 1.49498 1.15295 1.22584 0.94529 0.92447 0.93756 0.92050 1.22858 0.98154 1.00967 0.93986 1.22295 0.90158 0.99352 0.90584 1.48506 1.08243 1.72388 1.06666 1.19996 0.79358 0.75331 0.91461 1.90695 1.59710 1.48950 1.39331 1.23511 1.05613 1.04712 0.95862 1.85401 0.95521 1.91640 1.10794 1.22865 0.97785 1.55843 0.91827 0.90960 1.24987 0.95326 0.94620 0.98613 1.70024 1.02895 1.44794 1.32562 0.86173 0.77871 0.78508 0.82975 1.20301 1.19697 1.20747 1.21471 0.89704 0.98908 0.86490 0.90999 1.22011 1.01968 0.97996 0.99391 0.76093 0.88986 0.88895 0.76230 0.87735 0.92007 0.82022 0.89280 0.90349 0.90085 0.91468 0.89316 0.89394 0.92202 0.91656 0.92022 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 19.25 29.55 0.57 -0.13 16 2 C -0.21 -1.14 13.46 -37.12 -0.50 -1.63 16 3 C 0.23 1.30 6.15 -6.83 -0.04 1.26 16 4 N -0.73 -3.79 5.54 -63.16 -0.35 -4.14 16 5 C 0.51 3.92 7.87 -10.98 -0.09 3.84 16 6 O -0.52 -6.20 16.20 5.56 0.09 -6.11 16 7 C 0.04 0.23 6.03 -4.98 -0.03 0.20 16 8 N -0.66 -5.51 5.22 -106.05 -0.55 -6.06 16 9 C 0.08 0.65 3.10 -65.87 -0.20 0.45 16 10 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 11 C -0.12 -1.00 6.71 -24.58 -0.17 -1.16 16 12 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 13 N -0.62 -9.02 3.08 -163.01 -0.50 -9.52 16 14 C 0.55 10.73 7.65 -10.99 -0.08 10.65 16 15 O -0.51 -11.91 14.75 5.55 0.08 -11.83 16 16 C -0.15 -3.04 5.16 36.01 0.19 -2.85 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.14 1.70 3.42 -66.95 -0.23 1.47 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 C -0.16 -2.06 8.38 37.16 0.31 -1.75 16 29 H 0.22 0.18 7.80 -54.08 -0.42 -0.24 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 1.12 8.45 -40.82 -0.34 0.77 16 33 H 0.10 0.44 8.13 -51.93 -0.42 0.02 16 34 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.36 3.26 6.15 -39.29 -0.24 3.02 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.06 0.69 6.27 -51.93 -0.33 0.37 16 45 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -37.31 394.43 -8.54 -45.85 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.66 Total: 0.51 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.09 Total: -1.66 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.67 Total: -45.32 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.31 -8.54 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.808 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds