Wall clock time and date at job start Wed Apr 1 2020 00:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35972 * 116.99854 * 2 1 4 4 C 1.37571 * 120.82314 * 179.97438 * 3 2 1 5 5 C 1.38042 * 114.24166 * 180.02562 * 4 3 2 6 6 C 1.47119 * 127.75035 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00456 * 6.42623 * 6 5 4 8 8 N 1.34777 * 119.99348 * 186.42171 * 6 5 4 9 9 C 1.48148 * 127.84316 * 356.17539 * 8 6 5 10 10 C 1.54383 * 104.61719 * 140.39118 * 9 8 6 11 11 H 1.09001 * 110.34105 * 142.74321 * 10 9 8 12 12 C 1.53001 * 110.43400 * 264.95218 * 10 9 8 13 13 C 1.54283 * 104.96593 * 23.86838 * 10 9 8 14 14 C 1.52999 * 110.34531 * 241.02507 * 13 10 9 15 15 C 1.52994 * 110.34415 * 118.86753 * 13 10 9 16 16 N 1.46502 * 109.46963 * 180.02562 * 15 13 10 17 17 C 1.36939 * 119.99612 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99903 * 179.97438 * 17 16 15 20 20 N 1.31612 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47277 * 60.00011 * 21 19 17 23 23 H 1.48499 * 109.46824 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.48152 * 127.83480 * 176.14969 * 8 6 5 26 26 S 1.77225 * 104.48604 * 0.24233 * 5 4 3 27 27 N 1.30360 * 120.82257 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47595 * 300.00224 * 1 2 3 30 30 H 1.09006 * 109.46604 * 60.00368 * 1 2 3 31 31 H 1.07998 * 122.87676 * 0.02562 * 4 3 2 32 32 H 1.08999 * 110.40211 * 21.60773 * 9 8 6 33 33 H 1.08994 * 110.51027 * 259.22981 * 9 8 6 34 34 H 1.09000 * 109.47802 * 175.59011 * 12 10 9 35 35 H 1.09002 * 109.47172 * 295.59427 * 12 10 9 36 36 H 1.09000 * 109.47356 * 55.59313 * 12 10 9 37 37 H 1.09002 * 109.47202 * 298.52174 * 14 13 10 38 38 H 1.09002 * 109.47011 * 58.52255 * 14 13 10 39 39 H 1.08997 * 109.46878 * 178.52264 * 14 13 10 40 40 H 1.08998 * 109.47199 * 300.00543 * 15 13 10 41 41 H 1.09001 * 109.47308 * 60.00617 * 15 13 10 42 42 H 0.96996 * 120.00263 * 0.02562 * 16 15 13 43 43 H 0.97005 * 120.00397 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.40799 * 100.82464 * 25 8 6 45 45 H 1.09001 * 110.40547 * 338.38680 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 0.0005 5 6 3.9005 2.5970 0.0010 6 6 5.3049 3.0353 0.0022 7 8 6.1974 2.2174 -0.1151 8 7 5.6024 4.3433 0.1331 9 6 4.6625 5.4861 0.2082 10 6 5.2732 6.4235 1.2720 11 1 5.1261 7.4655 0.9881 12 6 4.6498 6.1536 2.6429 13 6 6.7772 6.0797 1.2898 14 6 7.1906 5.5727 2.6729 15 6 7.6076 7.3052 0.9035 16 7 9.0306 6.9577 0.9259 17 6 9.9710 7.9022 0.6118 18 1 9.6637 8.9032 0.3472 19 6 11.3195 7.5731 0.6335 20 7 11.6940 6.3531 0.9555 21 14 12.6024 8.8617 0.2058 22 1 12.4957 10.0001 1.1533 23 1 13.9575 8.2620 0.3023 24 1 12.3739 9.3471 -1.1789 25 6 6.9435 4.9645 0.2350 26 16 2.4470 3.6111 0.0080 27 7 1.3520 2.3149 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0644 0.4374 0.0006 32 1 3.6756 5.1464 0.5225 33 1 4.6002 5.9932 -0.7546 34 1 5.1459 6.7672 3.3949 35 1 3.5886 6.4010 2.6145 36 1 4.7706 5.1003 2.8961 37 1 7.0181 6.3542 3.4129 38 1 6.5999 4.6931 2.9289 39 1 8.2483 5.3095 2.6621 40 1 7.3293 7.6315 -0.0986 41 1 7.4187 8.1106 1.6133 42 1 9.3066 6.0584 1.1625 43 1 12.6362 6.1229 0.9704 44 1 7.2394 5.3895 -0.7241 45 1 7.6774 4.2313 0.5696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181499395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:17 Heat of formation + Delta-G solvation = 0.247844 kcal Electronic energy + Delta-G solvation = -27504.220666 eV Core-core repulsion = 23650.074499 eV Total energy + Delta-G solvation = -3854.146167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62157 -40.31702 -38.46218 -36.65738 -34.94386 -33.27762 -31.76142 -31.45317 -29.70091 -28.53940 -27.61252 -26.20415 -25.61350 -24.40453 -23.23844 -21.65889 -21.24987 -19.48570 -18.84217 -18.46883 -17.94155 -17.08927 -16.61101 -16.36116 -16.08740 -15.81273 -14.95518 -14.71731 -14.40554 -14.35244 -14.18912 -13.71820 -13.70439 -13.52830 -13.12970 -13.06632 -12.61735 -12.45581 -12.37866 -12.17774 -11.79565 -11.68774 -11.45707 -11.34807 -11.32943 -11.05311 -10.85699 -10.80095 -10.43984 -10.40590 -10.26508 -10.18942 -10.01024 -9.93923 -9.63384 -8.89448 -8.80897 -8.70584 -6.93640 -5.76687 -3.05841 -0.14652 0.83799 1.22849 1.94360 2.43979 2.87468 2.99483 3.43968 3.48535 3.49731 4.08053 4.41189 4.47568 4.57812 4.70724 4.78547 4.80705 4.87332 4.93360 5.15204 5.18752 5.28524 5.31791 5.36927 5.43035 5.52952 5.59265 5.69808 5.78219 5.84234 5.92201 5.93459 6.02537 6.08995 6.16195 6.18916 6.38956 6.50088 6.63480 6.68396 6.72545 6.81641 7.32852 7.68874 7.86568 8.41720 9.53143 10.09760 10.44022 11.45809 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.002488 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.113960 B =11251.992297 C =11805.778124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.306 3.694 4 C -0.129 4.129 5 C -0.173 4.173 6 C 0.609 3.391 7 O -0.512 6.512 8 N -0.611 5.611 9 C 0.100 3.900 10 C -0.094 4.094 11 H 0.094 0.906 12 C -0.145 4.145 13 C -0.075 4.075 14 C -0.133 4.133 15 C 0.168 3.832 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.122 3.878 26 S 0.295 5.705 27 N -0.531 5.531 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.178 0.822 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.085 0.915 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.361 -7.153 0.022 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.203 6.203 3 C 0.093 3.907 4 C -0.167 4.167 5 C -0.305 4.305 6 C 0.394 3.606 7 O -0.388 6.388 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.114 4.114 11 H 0.113 0.887 12 C -0.202 4.202 13 C -0.076 4.076 14 C -0.190 4.190 15 C 0.040 3.960 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.001 3.999 26 S 0.445 5.555 27 N -0.370 5.370 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.196 0.804 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.212 -6.278 -0.102 25.982 hybrid contribution 1.473 -0.941 -0.207 1.760 sum -23.739 -7.219 -0.310 24.814 Atomic orbital electron populations 1.22971 0.76700 1.03593 1.02544 1.86311 1.23003 1.22756 1.88209 1.19867 0.89693 0.85312 0.95852 1.20765 0.92480 0.98562 1.04845 1.25978 0.99117 0.97598 1.07785 1.16153 0.85268 0.81221 0.77917 1.90889 1.46834 1.51649 1.49435 1.48833 1.10496 1.04177 1.70905 1.22835 0.92043 0.87101 1.00570 1.22137 0.94732 0.99549 0.94998 0.88746 1.21947 0.99749 1.02194 0.96357 1.21736 0.93709 0.96167 0.95998 1.21878 1.02203 1.00089 0.94860 1.20716 0.85368 0.92421 0.97491 1.42392 0.99157 1.12732 1.83289 1.19146 0.86825 0.92509 1.38804 0.91267 1.24736 0.97072 0.96567 1.02447 1.69638 1.15636 1.17935 1.54763 0.86281 0.81116 0.80674 0.78163 1.21322 1.21738 1.21309 1.22620 0.82565 0.94791 0.99878 1.85119 0.89570 1.11115 1.69656 1.76383 1.28436 1.02007 1.30169 0.87998 0.92125 0.92143 0.80447 0.90994 0.89518 0.91447 0.92882 0.92430 0.92223 0.93354 0.91285 0.96063 0.95774 0.78022 0.93406 0.89663 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.31 16 2 O -0.30 -3.01 10.51 -19.65 -0.21 -3.22 16 3 C 0.31 3.43 7.36 -18.42 -0.14 3.30 16 4 C -0.13 -1.48 10.10 -39.90 -0.40 -1.88 16 5 C -0.17 -2.09 6.63 -36.05 -0.24 -2.33 16 6 C 0.61 8.89 7.89 -12.66 -0.10 8.79 16 7 O -0.51 -9.29 17.25 5.26 0.09 -9.20 16 8 N -0.61 -8.17 3.32 -170.68 -0.57 -8.74 16 9 C 0.10 1.02 6.06 -2.41 -0.01 1.01 16 10 C -0.09 -1.02 3.30 -89.22 -0.29 -1.31 16 11 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 12 C -0.15 -1.41 7.93 37.16 0.29 -1.11 16 13 C -0.07 -1.08 0.73 -153.11 -0.11 -1.19 16 14 C -0.13 -1.99 7.07 37.16 0.26 -1.73 16 15 C 0.17 3.04 4.87 -4.04 -0.02 3.02 16 16 N -0.73 -17.33 5.13 -59.91 -0.31 -17.63 16 17 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.12 1.90 5.70 -2.40 -0.01 1.89 16 26 S 0.29 2.95 19.89 -107.50 -2.14 0.81 16 27 N -0.53 -5.98 11.03 29.19 0.32 -5.66 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.07 0.65 3.84 -26.05 -0.10 0.55 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.67 6.84 -51.93 -0.36 0.31 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 37 H 0.06 0.84 6.89 -51.93 -0.36 0.48 16 38 H 0.05 0.67 6.71 -51.93 -0.35 0.32 16 39 H 0.07 1.24 6.78 -51.93 -0.35 0.88 16 40 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.39 9.68 6.19 -40.82 -0.25 9.43 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 1.40 7.83 -51.93 -0.41 0.99 16 45 H 0.09 1.62 7.64 -51.93 -0.40 1.23 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -32.05 372.92 -7.70 -39.75 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.24 Total: 5.53 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.03 Total: 2.66 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.17 Total: -59.01 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.12 Total: -12.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.14 Total: 0.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.05 -7.70 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181499395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.994 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds