Wall clock time and date at job start Wed Apr 1 2020 00:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 116.99990 * 2 1 4 4 C 1.37568 * 120.82585 * 180.29400 * 3 2 1 5 5 C 1.38044 * 114.24599 * 180.22049 * 4 3 2 6 6 C 1.47109 * 127.75526 * 179.80438 * 5 4 3 7 7 O 1.21629 * 120.00373 * 334.26715 * 6 5 4 8 8 N 1.34777 * 120.00132 * 154.26556 * 6 5 4 9 9 C 1.46932 * 120.62560 * 353.57046 * 8 6 5 10 10 C 1.53196 * 108.77370 * 233.58844 * 9 8 6 11 11 C 1.53045 * 109.31044 * 305.36354 * 10 9 8 12 12 H 1.09000 * 109.46330 * 301.34431 * 11 10 9 13 13 C 1.53003 * 109.44729 * 181.38046 * 11 10 9 14 14 N 1.46498 * 109.47074 * 64.96881 * 13 11 10 15 15 C 1.36932 * 119.99915 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00273 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00379 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99702 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47349 * 89.99547 * 19 17 15 21 21 H 1.48495 * 109.47101 * 209.99995 * 19 17 15 22 22 H 1.48505 * 109.47117 * 329.99735 * 19 17 15 23 23 C 1.53044 * 109.53802 * 61.36954 * 11 10 9 24 24 H 1.08998 * 109.49554 * 58.58018 * 23 11 10 25 25 C 1.52999 * 109.49523 * 178.68230 * 23 11 10 26 26 C 1.46921 * 120.63512 * 173.54824 * 8 6 5 27 27 S 1.77229 * 104.48178 * 359.54353 * 5 4 3 28 28 N 1.30363 * 120.82122 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47311 * 59.99645 * 1 2 3 30 30 H 1.09004 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47235 * 299.99499 * 1 2 3 32 32 H 1.07999 * 122.87529 * 0.04634 * 4 3 2 33 33 H 1.09002 * 109.58719 * 353.37018 * 9 8 6 34 34 H 1.08997 * 109.58351 * 113.80203 * 9 8 6 35 35 H 1.09000 * 109.49653 * 185.41713 * 10 9 8 36 36 H 1.09000 * 109.49977 * 65.31655 * 10 9 8 37 37 H 1.09000 * 109.46881 * 184.96681 * 13 11 10 38 38 H 1.09000 * 109.47311 * 304.96784 * 13 11 10 39 39 H 0.97001 * 120.00002 * 359.97438 * 14 13 11 40 40 H 0.97003 * 120.00489 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47104 * 60.00307 * 25 23 11 42 42 H 1.09007 * 109.46540 * 179.97438 * 25 23 11 43 43 H 1.08992 * 109.47340 * 299.99429 * 25 23 11 44 44 H 1.09002 * 109.58425 * 6.62815 * 26 8 6 45 45 H 1.09002 * 109.70652 * 246.26974 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 -0.0061 5 6 3.9005 2.5969 -0.0004 6 6 5.3048 3.0353 -0.0005 7 8 6.1688 2.3085 0.4518 8 7 5.6340 4.2422 -0.5018 9 6 4.6272 5.0719 -1.1779 10 6 5.1570 5.4603 -2.5618 11 6 6.5248 6.1301 -2.4105 12 1 6.4298 7.0101 -1.7743 13 6 7.0414 6.5503 -3.7879 14 7 6.1631 7.5820 -4.3450 15 6 6.4290 8.1148 -5.5781 16 1 7.2860 7.7741 -6.1402 17 6 5.5965 9.0920 -6.1063 18 7 5.8518 9.6037 -7.2917 19 14 4.1138 9.6808 -5.1345 20 1 4.5068 10.8293 -4.2792 21 1 3.0440 10.1054 -6.0726 22 1 3.6120 8.5755 -4.2790 23 6 7.5094 5.1456 -1.7752 24 1 7.5859 4.2546 -2.3984 25 6 8.8846 5.8051 -1.6545 26 6 7.0062 4.7536 -0.3824 27 16 2.4470 3.6110 -0.0008 28 7 1.3520 2.3148 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 4.0643 0.4374 -0.0118 33 1 3.7013 4.5070 -1.2864 34 1 4.4421 5.9719 -0.5916 35 1 4.4626 6.1541 -3.0356 36 1 5.2559 4.5663 -3.1776 37 1 8.0521 6.9470 -3.6914 38 1 7.0523 5.6855 -4.4513 39 1 5.3932 7.8878 -3.8404 40 1 5.2703 10.2868 -7.6606 41 1 8.8072 6.6950 -1.0300 42 1 9.5854 5.1036 -1.2016 43 1 9.2409 6.0864 -2.6454 44 1 7.6499 3.9787 0.0340 45 1 7.0174 5.6272 0.2694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184424310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:47 Heat of formation + Delta-G solvation = -29.732345 kcal Electronic energy + Delta-G solvation = -27306.275761 eV Core-core repulsion = 23450.829555 eV Total energy + Delta-G solvation = -3855.446206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64561 -41.11460 -39.37306 -37.53456 -36.74344 -35.15807 -33.67254 -32.47349 -32.38407 -29.29864 -28.68257 -28.01221 -25.95964 -24.97696 -23.87809 -22.89918 -22.37615 -21.08296 -20.33096 -19.77373 -19.42959 -18.75424 -17.57486 -17.28788 -17.24577 -16.70086 -16.48543 -15.99542 -15.80448 -15.60530 -15.34386 -15.08528 -14.89130 -14.67667 -14.46839 -14.33845 -14.08043 -13.91774 -13.28198 -13.18193 -13.04318 -12.92522 -12.86092 -12.70164 -12.56925 -12.16664 -12.15103 -11.98410 -11.96780 -11.82851 -11.61467 -11.59794 -11.23451 -11.20530 -10.92986 -10.89599 -9.82481 -9.41002 -9.24067 -7.99652 -5.32926 -1.04885 -0.06401 0.37809 1.04309 1.39678 1.45201 1.47155 1.52462 1.79868 2.16787 2.51984 3.13457 3.31888 3.54866 3.58889 3.68240 3.78904 3.91269 4.04623 4.06056 4.20434 4.28018 4.32977 4.33230 4.46074 4.49132 4.59913 4.66879 4.69563 4.69933 4.77279 4.82478 4.97240 4.99028 5.08924 5.10120 5.19531 5.25090 5.31682 5.46367 5.58410 5.79354 5.91220 6.06480 6.24083 6.75153 7.12016 7.87853 8.08380 9.22194 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.003074 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.125195 B = 9107.267878 C =10766.076585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.302 3.698 4 C -0.129 4.129 5 C -0.195 4.195 6 C 0.596 3.404 7 O -0.549 6.549 8 N -0.594 5.594 9 C 0.096 3.904 10 C -0.124 4.124 11 C -0.084 4.084 12 H 0.087 0.913 13 C 0.158 3.842 14 N -0.754 5.754 15 C -0.233 4.233 16 H 0.051 0.949 17 C -0.068 4.068 18 N -0.988 5.988 19 Si 0.955 3.045 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.241 1.241 23 C -0.089 4.089 24 H 0.066 0.934 25 C -0.145 4.145 26 C 0.121 3.879 27 S 0.338 5.662 28 N -0.541 5.541 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.060 0.940 32 H 0.184 0.816 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.013 0.987 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -16.464 21.678 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.089 3.911 4 C -0.167 4.167 5 C -0.327 4.327 6 C 0.382 3.618 7 O -0.428 6.428 8 N -0.325 5.325 9 C -0.029 4.029 10 C -0.162 4.162 11 C -0.103 4.103 12 H 0.105 0.895 13 C 0.032 3.968 14 N -0.400 5.400 15 C -0.364 4.364 16 H 0.069 0.931 17 C -0.259 4.259 18 N -0.639 5.639 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.165 1.165 23 C -0.109 4.109 24 H 0.084 0.916 25 C -0.203 4.203 26 C 0.000 4.000 27 S 0.489 5.511 28 N -0.382 5.382 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.201 0.799 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.498 -15.527 21.756 28.047 hybrid contribution -0.055 -0.780 -0.472 0.914 sum -8.553 -16.307 21.284 28.144 Atomic orbital electron populations 1.23226 0.75091 1.05534 1.02462 1.86305 1.24605 1.22203 1.87960 1.19949 0.89842 0.85613 0.95707 1.20871 0.92631 0.98684 1.04524 1.25888 0.99368 0.98450 1.08989 1.16798 0.85276 0.81379 0.78312 1.90826 1.49612 1.53893 1.48499 1.48022 1.12484 1.16734 1.55271 1.22367 0.90326 0.96303 0.93860 1.21888 0.97354 1.01076 0.95923 1.21330 0.94553 0.98600 0.95806 0.89490 1.20882 0.93354 0.89840 0.92677 1.42680 1.31806 1.46877 1.18682 1.19015 1.08278 1.15161 0.93940 0.93099 1.25574 1.02730 0.99786 0.97839 1.69901 1.41761 1.32631 1.19566 0.85403 0.79040 0.79176 0.78178 1.20304 1.22711 1.16481 1.21365 0.95551 0.98157 0.95780 0.91600 1.21808 0.94944 1.01124 1.02434 1.21880 0.80506 1.00494 0.97092 1.85049 0.87810 1.10359 1.67850 1.76346 1.28641 1.02338 1.30845 0.92323 0.85145 0.92089 0.79904 0.89447 0.87525 0.90407 0.92080 0.94909 0.96924 0.79830 0.93438 0.91377 0.91226 0.92753 0.88883 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.43 113.37 1.18 1.56 16 2 O -0.30 -5.57 10.51 -93.17 -0.98 -6.55 16 3 C 0.30 6.11 7.36 84.75 0.62 6.74 16 4 C -0.13 -2.56 10.18 22.07 0.22 -2.33 16 5 C -0.20 -3.95 6.10 24.55 0.15 -3.80 16 6 C 0.60 13.61 7.65 86.57 0.66 14.28 16 7 O -0.55 -15.64 16.45 -4.12 -0.07 -15.71 16 8 N -0.59 -11.65 2.97 -823.12 -2.45 -14.09 16 9 C 0.10 1.69 5.66 86.36 0.49 2.18 16 10 C -0.12 -2.88 5.25 30.67 0.16 -2.72 16 11 C -0.08 -2.06 1.73 -10.76 -0.02 -2.08 16 12 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 13 C 0.16 5.53 5.41 86.38 0.47 6.00 16 14 N -0.75 -33.13 5.12 -343.45 -1.76 -34.89 16 15 C -0.23 -13.03 10.47 84.04 0.88 -12.15 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 18 N -0.99 -63.05 13.97 21.65 0.30 -62.75 16 19 Si 0.96 43.59 27.74 68.60 1.90 45.49 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.24 -9.43 6.52 99.48 0.65 -8.78 16 23 C -0.09 -1.82 2.41 -10.71 -0.03 -1.85 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 C -0.15 -2.74 8.82 71.98 0.63 -2.11 16 26 C 0.12 2.19 5.73 86.37 0.49 2.69 16 27 S 0.34 5.97 20.19 -56.49 -1.14 4.83 16 28 N -0.54 -11.24 11.03 -175.21 -1.93 -13.17 16 29 H 0.06 0.75 8.13 -2.39 -0.02 0.74 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 32 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.09 1.48 3.77 -19.57 -0.07 1.41 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.99 7.15 -2.39 -0.02 1.98 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.18 6.14 -2.39 -0.01 1.16 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.37 14.94 4.71 -92.71 -0.44 14.50 16 40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.05 1.22 6.29 -2.39 -0.02 1.20 16 44 H 0.09 1.81 7.00 -2.39 -0.02 1.79 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.44 370.42 0.73 -71.71 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.46 Total: 22.22 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.39 Total: 2.91 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.83 Total: -124.90 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.05 Total: -22.26 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.49 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.14 Total: 4.83 kcal Total: -72.44 0.73 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184424310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.982 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds