Wall clock time and date at job start Wed Apr 1 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47014 * 231.24860 * 3 2 1 5 5 C 1.34777 * 119.99929 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00017 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.46904 * 109.46876 * 180.02562 * 7 5 4 9 9 C 1.46899 * 110.99801 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.64238 * 328.14546 * 9 8 7 11 11 C 1.55160 * 110.86974 * 91.39229 * 9 8 7 12 12 C 1.54909 * 101.58106 * 153.93740 * 11 9 8 13 13 N 1.47425 * 104.83141 * 322.98671 * 12 11 9 14 14 C 1.34771 * 125.64767 * 204.39712 * 13 12 11 15 15 O 1.21278 * 120.00143 * 179.69193 * 14 13 12 16 16 C 1.50706 * 119.99931 * 359.69212 * 14 13 12 17 17 S 1.81003 * 109.46955 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99790 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99728 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47033 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47242 * 119.99415 * 22 20 18 25 25 H 1.48500 * 109.46769 * 240.00010 * 22 20 18 26 26 C 1.47026 * 108.70074 * 24.13120 * 13 12 11 27 27 H 1.08994 * 109.88320 * 239.52037 * 26 13 12 28 28 C 1.53003 * 109.87951 * 118.51177 * 26 13 12 29 29 H 4.40643 * 5.51405 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46945 * 111.25794 * 3 2 1 31 31 H 1.08998 * 109.47442 * 351.25403 * 3 2 1 32 32 H 0.96994 * 120.00048 * 0.02562 * 4 3 2 33 33 H 1.08994 * 109.46961 * 60.00262 * 7 5 4 34 34 H 1.09003 * 109.46721 * 300.00164 * 7 5 4 35 35 H 1.00899 * 110.99870 * 56.05118 * 8 7 5 36 36 H 1.09006 * 111.00068 * 272.00747 * 11 9 8 37 37 H 1.08992 * 111.00480 * 35.81974 * 11 9 8 38 38 H 1.08996 * 110.36158 * 204.14752 * 12 11 9 39 39 H 1.09002 * 110.36956 * 81.83034 * 12 11 9 40 40 H 1.09000 * 109.46686 * 299.99326 * 16 14 13 41 41 H 1.08989 * 109.47272 * 60.00000 * 16 14 13 42 42 H 0.97003 * 119.99609 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.47015 * 61.45535 * 28 26 13 44 44 H 1.08999 * 109.46919 * 181.45025 * 28 26 13 45 45 H 1.08999 * 109.47504 * 301.45127 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8655 1.0772 5 6 4.4589 1.0198 1.2696 6 8 5.2473 0.4432 0.5507 7 6 4.9608 1.9090 2.3780 8 7 6.4298 1.9097 2.3780 9 6 6.9558 2.7684 3.4475 10 1 6.2842 3.6068 3.6324 11 6 7.1873 1.9533 4.7473 12 6 8.3009 2.7793 5.4382 13 7 9.1629 3.2459 4.3370 14 6 10.4619 3.5878 4.4472 15 8 11.0776 3.9543 3.4687 16 6 11.1494 3.5146 5.7863 17 16 12.8742 4.0336 5.6081 18 6 13.4205 3.8568 7.2739 19 1 12.7339 3.5141 8.0338 20 6 14.7330 4.1589 7.6095 21 7 15.5696 4.5771 6.6834 22 14 15.3125 3.9708 9.3754 23 1 14.1878 3.4881 10.2167 24 1 16.4271 2.9911 9.4289 25 1 15.7827 5.2841 9.8846 26 6 8.3725 3.2705 3.0975 27 1 8.8259 2.6133 2.3556 28 6 8.3022 4.6988 2.5535 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.3734 -0.9578 31 1 3.0098 -1.0149 0.1563 32 1 2.5034 1.3263 1.6524 33 1 4.5973 1.5361 3.3356 34 1 4.5972 2.9246 2.2218 35 1 6.7912 2.1904 1.4787 36 1 6.2846 1.9270 5.3578 37 1 7.5321 0.9448 4.5198 38 1 8.8687 2.1510 6.1244 39 1 7.8698 3.6285 5.9685 40 1 10.6429 4.1739 6.4912 41 1 11.1143 2.4903 6.1572 42 1 16.4869 4.7879 6.9179 43 1 9.3079 5.0487 2.3203 44 1 7.6937 4.7136 1.6493 45 1 7.8551 5.3516 3.3031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278221004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:06 Heat of formation + Delta-G solvation = -34.432050 kcal Electronic energy + Delta-G solvation = -25798.980290 eV Core-core repulsion = 21943.330290 eV Total energy + Delta-G solvation = -3855.650000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33912 -40.69939 -38.88206 -36.58878 -35.78456 -34.58771 -33.58355 -32.83701 -31.96598 -30.17687 -28.95435 -27.65971 -26.93906 -25.07186 -23.91741 -21.65716 -21.62246 -20.47379 -19.63172 -19.40733 -18.18836 -17.86400 -17.48308 -17.13701 -16.88642 -16.85474 -16.46612 -16.10475 -15.90290 -15.42989 -15.13982 -14.79917 -14.63769 -14.51047 -14.41089 -14.19036 -14.08820 -13.89791 -13.71267 -13.16451 -13.13759 -13.05789 -12.90995 -12.72664 -12.56991 -12.38448 -11.98630 -11.81677 -11.72750 -11.64498 -11.46874 -11.15855 -10.91032 -10.82305 -10.27495 -10.14201 -9.70300 -9.43190 -8.67933 -8.34740 -6.13348 1.23509 1.39672 1.41788 1.45734 1.57262 1.59040 1.61864 1.83125 2.05300 2.27194 2.46103 2.99577 3.18245 3.24286 3.35858 3.41331 3.64201 3.82713 3.90540 4.04623 4.22821 4.27354 4.32282 4.38193 4.42725 4.45895 4.48531 4.54419 4.55852 4.57688 4.71506 4.79657 4.98181 5.00485 5.05478 5.21809 5.27490 5.30994 5.41831 5.46009 5.94819 6.19917 6.20890 6.42815 6.53296 6.57533 7.06438 7.14919 7.22978 8.74899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035686 B = 0.001664 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.439750 B =16821.696294 C =17180.921674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.247 4.247 3 C 0.232 3.768 4 N -0.718 5.718 5 C 0.512 3.488 6 O -0.571 6.571 7 C 0.047 3.953 8 N -0.679 5.679 9 C 0.096 3.904 10 H 0.096 0.904 11 C -0.112 4.112 12 C 0.089 3.911 13 N -0.612 5.612 14 C 0.545 3.455 15 O -0.564 6.564 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.129 3.871 27 H 0.058 0.942 28 C -0.158 4.158 29 H 0.252 0.748 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.418 0.582 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.348 0.652 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.452 -6.161 -5.699 37.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.248 4.248 3 C 0.109 3.891 4 N -0.373 5.373 5 C 0.299 3.701 6 O -0.449 6.449 7 C -0.084 4.084 8 N -0.312 5.312 9 C -0.014 4.014 10 H 0.114 0.886 11 C -0.151 4.151 12 C -0.033 4.033 13 N -0.347 5.347 14 C 0.333 3.667 15 O -0.443 6.443 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.199 1.199 26 C 0.025 3.975 27 H 0.076 0.924 28 C -0.216 4.216 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.255 0.745 33 H 0.148 0.852 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -34.688 -6.538 -7.339 36.053 hybrid contribution -0.173 0.529 1.382 1.490 sum -34.861 -6.010 -5.957 35.873 Atomic orbital electron populations 1.25860 0.96735 0.97430 0.96652 1.22992 0.94490 1.03429 1.03850 1.17931 0.83782 0.95751 0.91660 1.45859 1.07014 1.49469 1.34930 1.21091 0.81783 0.81857 0.85342 1.90751 1.56276 1.49180 1.48739 1.21943 0.88618 0.99296 0.98565 1.60181 1.06607 1.56208 1.08230 1.22550 0.92239 0.94477 0.92165 0.88644 1.22863 0.98710 0.98524 0.94964 1.22710 0.91833 0.99224 0.89571 1.48431 1.08517 1.66058 1.11669 1.19774 0.80832 0.76385 0.89675 1.90675 1.65134 1.48054 1.40395 1.23299 0.99999 1.05932 0.97740 1.85605 1.04082 1.87467 1.15360 1.23226 0.99791 1.52214 0.94034 0.89877 1.26143 0.95559 0.93759 1.03657 1.70197 1.05810 1.43197 1.35645 0.84890 0.78439 0.78192 0.76318 1.17888 1.19978 1.19851 1.21730 0.91893 0.97257 0.86615 0.92434 1.22104 1.01946 0.95639 1.01919 0.73166 0.89750 0.89838 0.74533 0.85227 0.88923 0.83215 0.86364 0.90884 0.90055 0.88998 0.87428 0.87785 0.91993 0.94583 0.89711 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.25 -2.34 13.46 31.13 0.42 -1.92 16 3 C 0.23 2.57 6.15 84.57 0.52 3.09 16 4 N -0.72 -6.33 5.54 -472.12 -2.61 -8.95 16 5 C 0.51 7.15 7.87 87.66 0.69 7.84 16 6 O -0.57 -13.99 16.20 -3.02 -0.05 -14.04 16 7 C 0.05 0.38 6.03 85.56 0.52 0.89 16 8 N -0.68 -10.05 5.97 -489.44 -2.92 -12.98 16 9 C 0.10 1.32 2.81 46.10 0.13 1.45 16 10 H 0.10 0.83 7.54 -2.39 -0.02 0.81 16 11 C -0.11 -1.46 6.78 31.99 0.22 -1.24 16 12 C 0.09 1.62 6.69 86.85 0.58 2.20 16 13 N -0.61 -17.30 3.06 -788.06 -2.41 -19.72 16 14 C 0.55 21.73 7.66 87.66 0.67 22.40 16 15 O -0.56 -27.72 14.91 -3.02 -0.05 -27.76 16 16 C -0.12 -4.94 5.16 71.24 0.37 -4.57 16 17 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 18 C -0.54 -31.56 9.50 67.96 0.65 -30.91 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 22 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.13 3.05 2.95 45.34 0.13 3.18 16 27 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 28 C -0.16 -3.66 9.12 71.98 0.66 -3.00 16 29 H 0.25 -0.46 7.80 -4.41 -0.03 -0.49 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 1.21 8.45 -92.71 -0.78 0.42 16 33 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.09 0.25 8.08 -2.39 -0.02 0.23 16 35 H 0.35 6.17 8.02 -89.69 -0.72 5.45 16 36 H 0.12 0.71 8.14 -2.38 -0.02 0.70 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.52 7.47 -2.39 -0.02 1.50 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 41 H 0.10 3.98 7.84 -2.40 -0.02 3.96 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.03 1.15 6.89 -2.39 -0.02 1.13 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -87.83 398.65 0.05 -87.78 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.49 Total: 14.83 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 7.44 Total: 1.19 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -7.67 Total: -98.10 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.09 Total: -41.80 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -87.83 0.05 -87.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278221004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.344 kcal (2) G-P(sol) polarization free energy of solvation -87.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds