Wall clock time and date at job start Wed Apr 1 2020 00:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00078 * 2 1 4 4 C 1.50704 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.28639 * 124.72150 * 90.24361 * 4 3 2 6 6 C 1.33560 * 115.76641 * 180.18973 * 5 4 3 7 7 C 1.47263 * 123.14040 * 179.82937 * 6 5 4 8 8 O 1.21643 * 119.99951 * 179.70494 * 7 6 5 9 9 N 1.34772 * 120.00308 * 359.70494 * 7 6 5 10 10 C 1.47491 * 127.03337 * 359.97438 * 9 7 6 11 11 C 1.54002 * 107.08234 * 205.47832 * 10 9 7 12 12 H 1.08998 * 110.33084 * 239.69582 * 11 10 9 13 13 C 1.53006 * 110.32720 * 117.58178 * 11 10 9 14 14 C 1.54615 * 105.04512 * 358.69352 * 11 10 9 15 15 H 1.09003 * 110.74442 * 96.48902 * 14 11 10 16 16 C 1.53007 * 110.73770 * 219.81383 * 14 11 10 17 17 N 1.46497 * 109.46965 * 184.99669 * 16 14 11 18 18 C 1.36942 * 119.99698 * 179.97438 * 17 16 14 19 19 H 1.07990 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99935 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47103 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47182 * 120.00277 * 22 20 18 25 25 H 1.48503 * 109.47168 * 240.00077 * 22 20 18 26 26 C 1.48117 * 127.03478 * 180.02562 * 9 7 6 27 27 C 1.35203 * 113.71525 * 359.56082 * 6 5 4 28 28 S 1.70772 * 124.71692 * 269.97831 * 4 3 2 29 29 H 1.09000 * 109.47491 * 59.99540 * 1 2 3 30 30 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46973 * 299.99287 * 1 2 3 32 32 H 1.09006 * 109.46975 * 60.00530 * 3 2 1 33 33 H 1.08995 * 109.47186 * 300.00473 * 3 2 1 34 34 H 1.08996 * 109.91337 * 86.11505 * 10 9 7 35 35 H 1.09000 * 110.06771 * 324.92222 * 10 9 7 36 36 H 1.09001 * 109.47002 * 61.45083 * 13 11 10 37 37 H 1.08993 * 109.46955 * 181.45520 * 13 11 10 38 38 H 1.09000 * 109.47050 * 301.45349 * 13 11 10 39 39 H 1.08996 * 109.46930 * 304.99762 * 16 14 11 40 40 H 1.08992 * 109.47303 * 64.99794 * 16 14 11 41 41 H 0.96997 * 120.00765 * 0.02562 * 17 16 14 42 42 H 0.96996 * 120.00065 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.66742 * 259.11678 * 26 9 7 44 44 H 1.08999 * 110.66592 * 22.07103 * 26 9 7 45 45 H 1.08002 * 125.58594 * 180.26365 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2429 1.1333 -1.0583 6 6 5.5578 1.0243 -0.8509 7 6 6.5415 0.9469 -1.9441 8 8 7.7274 0.8538 -1.6897 9 7 6.1280 0.9792 -3.2264 10 6 4.7385 1.0878 -3.7092 11 6 4.6967 0.4559 -5.1130 12 1 4.3684 1.1898 -5.8490 13 6 3.7652 -0.7579 -5.1220 14 6 6.1517 0.0184 -5.3996 15 1 6.2919 -1.0360 -5.1612 16 6 6.5252 0.3003 -6.8564 17 7 7.8627 -0.2316 -7.1293 18 6 8.4118 -0.0966 -8.3765 19 1 7.8592 0.4022 -9.1587 20 6 9.6794 -0.6000 -8.6349 21 7 10.3532 -1.2075 -7.6813 22 14 10.4288 -0.4153 -10.3360 23 1 9.4757 0.3004 -11.2217 24 1 11.6916 0.3601 -10.2391 25 1 10.7152 -1.7592 -10.8994 26 6 6.9757 0.9120 -4.4391 27 6 5.9018 0.9974 0.4563 28 16 4.4827 1.1100 1.4027 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 4.4458 2.1362 -3.7651 35 1 4.0669 0.5501 -3.0399 36 1 2.7537 -0.4414 -4.8675 37 1 3.7661 -1.2091 -6.1142 38 1 4.1124 -1.4877 -4.3906 39 1 5.8020 -0.1791 -7.5161 40 1 6.5194 1.3760 -7.0313 41 1 8.3591 -0.6799 -6.4268 42 1 11.2388 -1.5597 -7.8620 43 1 7.1175 1.9053 -4.8649 44 1 7.9371 0.4517 -4.2114 45 1 6.9083 0.9182 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325598509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:27 Heat of formation + Delta-G solvation = -13.496424 kcal Electronic energy + Delta-G solvation = -27069.857371 eV Core-core repulsion = 23215.115208 eV Total energy + Delta-G solvation = -3854.742163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79054 -39.30570 -38.25728 -37.58031 -34.58609 -32.73766 -31.93893 -31.31735 -29.17385 -28.57109 -26.72669 -26.35930 -25.88939 -24.26944 -23.01535 -21.51169 -20.72233 -19.83870 -19.71874 -18.45872 -17.09342 -17.00095 -16.46550 -16.29774 -16.15427 -15.82534 -15.39633 -14.87187 -14.39349 -14.36687 -14.04112 -13.84118 -13.39964 -13.23586 -13.14909 -12.92287 -12.81558 -12.67712 -12.43105 -12.22087 -11.95107 -11.89635 -11.69743 -11.18767 -11.05876 -10.82527 -10.51482 -10.40529 -10.31007 -10.26262 -10.14950 -10.01917 -9.92018 -9.81725 -9.60434 -9.30090 -8.83627 -8.46936 -6.87180 -5.70885 -3.00056 0.15855 0.85714 1.25686 1.69405 3.01705 3.18585 3.36783 3.47123 3.52157 3.54872 3.82754 4.35932 4.55869 4.64119 4.77020 4.78933 4.83333 4.86346 4.93034 4.97589 5.01882 5.09068 5.22725 5.39295 5.52682 5.62412 5.64537 5.68460 5.77548 5.94785 6.03881 6.09812 6.17442 6.22013 6.30126 6.32440 6.47649 6.51352 6.60545 6.78237 6.92200 7.10160 7.65836 7.75019 8.19086 8.47389 9.58523 10.16429 10.50824 11.51906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002444 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.525748 B =11454.445469 C =12605.208911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.011 3.989 5 N -0.417 5.417 6 C 0.019 3.981 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.601 5.601 10 C 0.107 3.893 11 C -0.103 4.103 12 H 0.085 0.915 13 C -0.138 4.138 14 C -0.101 4.101 15 H 0.083 0.917 16 C 0.166 3.834 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.114 3.886 27 C -0.221 4.221 28 S 0.232 5.768 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.063 6.395 21.460 32.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.062 3.938 4 C -0.268 4.268 5 N -0.134 5.134 6 C -0.117 4.117 7 C 0.391 3.609 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.122 4.122 12 H 0.103 0.897 13 C -0.195 4.195 14 C -0.121 4.121 15 H 0.102 0.898 16 C 0.038 3.962 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.007 4.007 27 C -0.363 4.363 28 S 0.488 5.512 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.750 6.274 22.042 32.292 hybrid contribution 1.139 0.084 -1.500 1.885 sum -21.612 6.358 20.542 30.487 Atomic orbital electron populations 1.22814 0.79851 1.03441 1.00366 1.87972 1.20391 1.26200 1.95524 1.20756 0.84238 0.86163 1.02621 1.26671 1.00805 1.07126 0.92191 1.67045 1.03228 1.12631 1.30526 1.20427 0.89817 1.07910 0.93511 1.16596 0.86385 0.77414 0.80548 1.90855 1.16051 1.51285 1.82978 1.48585 1.09758 1.70302 1.04623 1.22430 0.83144 1.00802 0.95240 1.22138 0.95874 0.98155 0.96079 0.89674 1.21799 0.98340 0.97206 1.02204 1.22572 0.93015 1.00059 0.96457 0.89830 1.20625 0.88604 0.96465 0.90550 1.42396 1.14202 1.69224 1.11934 1.19255 0.98289 1.30760 0.88693 0.91138 1.24758 0.97352 1.01249 0.97707 1.69677 1.13152 1.43555 1.31636 0.86124 0.79030 0.77173 0.83901 1.20587 1.21903 1.21915 1.22642 0.95207 1.00419 0.82429 1.26702 1.06317 1.06446 0.96824 1.82768 0.94602 1.62929 1.10875 0.93447 0.89056 0.93725 0.90789 0.89826 0.92044 0.88330 0.92818 0.92072 0.92769 0.95878 0.96088 0.78206 0.93554 0.90530 0.89210 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.15 10.69 -35.23 -0.38 -3.53 16 3 C 0.14 0.95 6.51 36.01 0.23 1.19 16 4 C 0.01 0.10 6.97 -13.61 -0.09 0.01 16 5 N -0.42 -5.08 7.45 -8.51 -0.06 -5.14 16 6 C 0.02 0.26 6.63 -84.53 -0.56 -0.30 16 7 C 0.61 10.34 7.87 -12.59 -0.10 10.24 16 8 O -0.53 -10.77 16.92 5.24 0.09 -10.68 16 9 N -0.60 -9.76 3.29 -171.09 -0.56 -10.33 16 10 C 0.11 1.43 5.82 -2.98 -0.02 1.41 16 11 C -0.10 -1.38 3.17 -89.24 -0.28 -1.66 16 12 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 13 C -0.14 -1.67 8.89 37.16 0.33 -1.34 16 14 C -0.10 -1.72 2.62 -88.75 -0.23 -1.95 16 15 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 16 C 0.17 3.34 5.58 -4.04 -0.02 3.32 16 17 N -0.73 -18.94 5.52 -59.91 -0.33 -19.27 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 C 0.11 2.04 6.45 -2.14 -0.01 2.02 16 27 C -0.22 -2.42 10.62 29.65 0.31 -2.11 16 28 S 0.23 1.77 22.92 -107.50 -2.46 -0.69 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.30 5.57 -51.93 -0.29 1.02 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.43 7.99 -51.93 -0.42 0.01 16 41 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 42 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.08 1.35 7.94 -51.93 -0.41 0.94 16 44 H 0.09 1.83 7.85 -51.93 -0.41 1.42 16 45 H 0.19 1.93 8.03 -52.49 -0.42 1.50 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -35.23 386.65 -8.61 -43.83 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.85 Total: 5.79 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 0.42 Total: 4.60 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.23 Total: -63.01 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.29 Total: -14.20 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.46 Total: -0.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.23 -8.61 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325598509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.337 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds