Wall clock time and date at job start Wed Apr 1 2020 00:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00078 * 2 1 4 4 C 1.50704 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.28639 * 124.72150 * 90.24361 * 4 3 2 6 6 C 1.33560 * 115.76641 * 180.18973 * 5 4 3 7 7 C 1.47263 * 123.14040 * 179.82937 * 6 5 4 8 8 O 1.21643 * 119.99951 * 179.70494 * 7 6 5 9 9 N 1.34772 * 120.00308 * 359.70494 * 7 6 5 10 10 C 1.47491 * 127.03337 * 359.97438 * 9 7 6 11 11 C 1.54002 * 107.08234 * 205.47832 * 10 9 7 12 12 H 1.08998 * 110.33084 * 239.69582 * 11 10 9 13 13 C 1.53006 * 110.32720 * 117.58178 * 11 10 9 14 14 C 1.54615 * 105.04512 * 358.69352 * 11 10 9 15 15 H 1.09003 * 110.74442 * 96.48902 * 14 11 10 16 16 C 1.53007 * 110.73770 * 219.81383 * 14 11 10 17 17 N 1.46497 * 109.46965 * 184.99669 * 16 14 11 18 18 C 1.36942 * 119.99698 * 179.97438 * 17 16 14 19 19 H 1.07990 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99935 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47103 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47182 * 120.00277 * 22 20 18 25 25 H 1.48503 * 109.47168 * 240.00077 * 22 20 18 26 26 C 1.48117 * 127.03478 * 180.02562 * 9 7 6 27 27 C 1.35203 * 113.71525 * 359.56082 * 6 5 4 28 28 S 1.70772 * 124.71692 * 269.97831 * 4 3 2 29 29 H 1.09000 * 109.47491 * 59.99540 * 1 2 3 30 30 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46973 * 299.99287 * 1 2 3 32 32 H 1.09006 * 109.46975 * 60.00530 * 3 2 1 33 33 H 1.08995 * 109.47186 * 300.00473 * 3 2 1 34 34 H 1.08996 * 109.91337 * 86.11505 * 10 9 7 35 35 H 1.09000 * 110.06771 * 324.92222 * 10 9 7 36 36 H 1.09001 * 109.47002 * 61.45083 * 13 11 10 37 37 H 1.08993 * 109.46955 * 181.45520 * 13 11 10 38 38 H 1.09000 * 109.47050 * 301.45349 * 13 11 10 39 39 H 1.08996 * 109.46930 * 304.99762 * 16 14 11 40 40 H 1.08992 * 109.47303 * 64.99794 * 16 14 11 41 41 H 0.96997 * 120.00765 * 0.02562 * 17 16 14 42 42 H 0.96996 * 120.00065 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.66742 * 259.11678 * 26 9 7 44 44 H 1.08999 * 110.66592 * 22.07103 * 26 9 7 45 45 H 1.08002 * 125.58594 * 180.26365 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2429 1.1333 -1.0583 6 6 5.5578 1.0243 -0.8509 7 6 6.5415 0.9469 -1.9441 8 8 7.7274 0.8538 -1.6897 9 7 6.1280 0.9792 -3.2264 10 6 4.7385 1.0878 -3.7092 11 6 4.6967 0.4559 -5.1130 12 1 4.3684 1.1898 -5.8490 13 6 3.7652 -0.7579 -5.1220 14 6 6.1517 0.0184 -5.3996 15 1 6.2919 -1.0360 -5.1612 16 6 6.5252 0.3003 -6.8564 17 7 7.8627 -0.2316 -7.1293 18 6 8.4118 -0.0966 -8.3765 19 1 7.8592 0.4022 -9.1587 20 6 9.6794 -0.6000 -8.6349 21 7 10.3532 -1.2075 -7.6813 22 14 10.4288 -0.4153 -10.3360 23 1 9.4757 0.3004 -11.2217 24 1 11.6916 0.3601 -10.2391 25 1 10.7152 -1.7592 -10.8994 26 6 6.9757 0.9120 -4.4391 27 6 5.9018 0.9974 0.4563 28 16 4.4827 1.1100 1.4027 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 4.4458 2.1362 -3.7651 35 1 4.0669 0.5501 -3.0399 36 1 2.7537 -0.4414 -4.8675 37 1 3.7661 -1.2091 -6.1142 38 1 4.1124 -1.4877 -4.3906 39 1 5.8020 -0.1791 -7.5161 40 1 6.5194 1.3760 -7.0313 41 1 8.3591 -0.6799 -6.4268 42 1 11.2388 -1.5597 -7.8620 43 1 7.1175 1.9053 -4.8649 44 1 7.9371 0.4517 -4.2114 45 1 6.9083 0.9182 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325598509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:26 Heat of formation + Delta-G solvation = -38.634271 kcal Electronic energy + Delta-G solvation = -27070.947430 eV Core-core repulsion = 23215.115208 eV Total energy + Delta-G solvation = -3855.832222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83287 -40.37830 -39.11319 -38.57095 -36.47008 -34.21500 -33.06552 -32.68466 -30.80568 -29.18356 -27.96598 -27.26464 -26.82294 -25.70219 -24.55694 -22.79006 -21.80230 -21.13581 -20.68166 -19.60802 -18.97480 -17.63718 -17.45992 -17.29894 -17.06686 -16.64896 -16.57682 -16.32297 -15.83552 -15.53391 -15.24121 -14.95496 -14.91935 -14.83722 -14.34830 -14.04304 -13.76949 -13.64394 -13.44611 -13.22013 -13.12860 -12.98931 -12.83875 -12.77210 -12.47281 -12.31972 -12.09882 -11.97170 -11.78148 -11.60160 -11.51542 -11.32476 -10.95658 -10.82767 -10.77246 -10.60790 -10.11795 -9.72929 -9.00909 -7.94819 -5.24625 -0.64174 0.15489 0.48480 0.73299 1.46457 1.48126 1.58241 1.86072 2.12294 2.55590 2.61662 3.14264 3.38333 3.45926 3.58369 3.71881 3.79868 3.96169 4.13930 4.17298 4.21576 4.25783 4.37568 4.44876 4.50433 4.53544 4.59155 4.62850 4.66991 4.74513 4.79290 4.85564 4.87655 4.96524 5.06098 5.13642 5.18468 5.24848 5.31803 5.49247 5.53778 6.12827 6.26462 6.26666 6.43008 6.91732 7.32271 8.07950 8.30393 9.29266 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002444 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.525748 B =11454.445469 C =12605.208911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.139 3.861 4 C -0.002 4.002 5 N -0.438 5.438 6 C -0.010 4.010 7 C 0.596 3.404 8 O -0.582 6.582 9 N -0.603 5.603 10 C 0.113 3.887 11 C -0.092 4.092 12 H 0.105 0.895 13 C -0.133 4.133 14 C -0.091 4.091 15 H 0.065 0.935 16 C 0.167 3.833 17 N -0.748 5.748 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.117 3.883 27 C -0.235 4.235 28 S 0.330 5.670 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.527 7.572 22.229 35.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.060 3.940 4 C -0.281 4.281 5 N -0.155 5.155 6 C -0.146 4.146 7 C 0.384 3.616 8 O -0.463 6.463 9 N -0.334 5.334 10 C -0.009 4.009 11 C -0.112 4.112 12 H 0.123 0.877 13 C -0.191 4.191 14 C -0.111 4.111 15 H 0.083 0.917 16 C 0.040 3.960 17 N -0.391 5.391 18 C -0.372 4.372 19 H 0.099 0.901 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.805 3.195 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.221 1.221 26 C -0.005 4.005 27 C -0.378 4.378 28 S 0.588 5.412 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -26.315 7.478 22.807 35.617 hybrid contribution 2.093 -0.259 -1.584 2.637 sum -24.222 7.219 21.224 33.004 Atomic orbital electron populations 1.22984 0.78179 1.04081 1.01674 1.87918 1.22267 1.27078 1.95812 1.20992 0.82289 0.86077 1.04633 1.27278 1.02317 1.05782 0.92680 1.66976 1.02420 1.13988 1.32137 1.20000 0.90227 1.11293 0.93035 1.17212 0.86655 0.76384 0.81395 1.90806 1.18192 1.53525 1.83785 1.48677 1.10648 1.69933 1.04122 1.22556 0.81495 1.01875 0.94990 1.22151 0.93273 0.99217 0.96536 0.87705 1.21767 0.99305 0.96158 1.01826 1.22382 0.95673 0.98777 0.94228 0.91680 1.20777 0.86105 0.96487 0.92589 1.42654 1.16142 1.69356 1.10926 1.19707 0.98379 1.29429 0.89730 0.90114 1.25651 0.98188 1.01828 1.01655 1.69856 1.13346 1.45347 1.33899 0.85024 0.78025 0.76892 0.79526 1.18580 1.22270 1.22083 1.22430 0.94192 1.00146 0.83755 1.26973 1.08437 1.05394 0.97018 1.82410 0.90913 1.59997 1.07845 0.92733 0.88859 0.91803 0.87475 0.89133 0.90456 0.87638 0.90086 0.92195 0.94024 0.94868 0.95201 0.79796 0.94122 0.90476 0.93048 0.78968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.65 10.69 -148.98 -1.59 -7.24 16 3 C 0.14 1.41 6.51 71.24 0.46 1.88 16 4 C 0.00 -0.03 6.97 88.58 0.62 0.59 16 5 N -0.44 -10.12 7.45 -180.84 -1.35 -11.47 16 6 C -0.01 -0.28 6.63 40.55 0.27 -0.01 16 7 C 0.60 21.41 7.87 86.62 0.68 22.09 16 8 O -0.58 -25.25 16.92 -4.17 -0.07 -25.32 16 9 N -0.60 -20.26 3.29 -813.46 -2.68 -22.94 16 10 C 0.11 2.90 5.82 86.53 0.50 3.40 16 11 C -0.09 -2.34 3.17 -9.90 -0.03 -2.37 16 12 H 0.10 2.30 7.85 -2.39 -0.02 2.28 16 13 C -0.13 -2.97 8.89 71.98 0.64 -2.33 16 14 C -0.09 -3.14 2.62 -9.58 -0.03 -3.17 16 15 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 16 C 0.17 6.73 5.58 86.38 0.48 7.21 16 17 N -0.75 -39.62 5.52 -343.46 -1.90 -41.52 16 18 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 19 H 0.08 4.38 7.83 -2.92 -0.02 4.36 16 20 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 21 N -0.97 -62.55 13.06 21.65 0.28 -62.27 16 22 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 26 C 0.12 4.40 6.45 86.73 0.56 4.96 16 27 C -0.24 -5.04 10.62 67.12 0.71 -4.33 16 28 S 0.33 4.14 22.92 -56.49 -1.29 2.84 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.11 2.64 5.57 -2.39 -0.01 2.63 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.03 1.18 7.99 -2.39 -0.02 1.16 16 41 H 0.37 21.41 7.67 -92.71 -0.71 20.70 16 42 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.08 2.83 7.94 -2.39 -0.02 2.81 16 44 H 0.05 2.30 7.85 -2.39 -0.02 2.28 16 45 H 0.19 3.94 8.03 -2.91 -0.02 3.91 16 Total: -1.00 -79.73 386.65 1.15 -78.58 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.29 Total: 27.73 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 7.43 Total: 11.99 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -5.64 Total: -138.20 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.66 Total: -32.56 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.29 Total: 2.84 kcal Total: -79.73 1.15 -78.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325598509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.943 kcal (2) G-P(sol) polarization free energy of solvation -79.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds