Wall clock time and date at job start Wed Apr 1 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34878 * 116.99926 * 2 1 4 4 O 1.21609 * 120.00478 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99813 * 179.97438 * 3 2 1 6 6 C 1.36762 * 126.18097 * 0.02562 * 5 3 2 7 7 N 1.30904 * 113.93831 * 179.97438 * 6 5 3 8 8 C 1.29397 * 117.46621 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.71059 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46863 * 90.02542 * 9 8 7 11 11 C 1.46898 * 110.99999 * 294.30523 * 10 9 8 12 12 C 1.53239 * 109.33591 * 172.74645 * 11 10 9 13 13 H 1.09005 * 109.78681 * 173.63315 * 12 11 10 14 14 C 1.52994 * 109.63048 * 294.11842 * 12 11 10 15 15 N 1.47083 * 108.52233 * 53.83287 * 12 11 10 16 16 C 1.36938 * 120.88335 * 128.79133 * 15 12 11 17 17 H 1.08004 * 119.99767 * 206.34904 * 16 15 12 18 18 C 1.38810 * 119.99833 * 26.34883 * 16 15 12 19 19 N 1.31623 * 120.00136 * 17.41531 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 197.41223 * 18 16 15 21 21 H 1.48500 * 109.47332 * 90.00155 * 20 18 16 22 22 H 1.48501 * 109.46919 * 209.99988 * 20 18 16 23 23 H 1.48493 * 109.47288 * 329.99863 * 20 18 16 24 24 C 1.47075 * 118.23478 * 308.80855 * 15 12 11 25 25 H 1.08996 * 109.79638 * 291.38468 * 24 15 12 26 26 C 1.53005 * 109.62978 * 170.89593 * 24 15 12 27 27 C 1.46898 * 110.99877 * 170.00315 * 10 9 8 28 28 S 1.70924 * 110.58523 * 0.23075 * 8 7 6 29 29 H 1.09000 * 109.47172 * 59.99418 * 1 2 3 30 30 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47281 * 300.00266 * 1 2 3 32 32 H 1.08003 * 123.02653 * 359.96579 * 6 5 3 33 33 H 1.08997 * 109.47337 * 210.02386 * 9 8 7 34 34 H 1.08997 * 109.47168 * 330.03176 * 9 8 7 35 35 H 1.09001 * 109.49337 * 292.70265 * 11 10 9 36 36 H 1.08996 * 109.49410 * 52.78965 * 11 10 9 37 37 H 1.08998 * 109.47230 * 179.03324 * 14 12 11 38 38 H 1.09000 * 109.47124 * 299.03152 * 14 12 11 39 39 H 1.08996 * 109.47088 * 59.03157 * 14 12 11 40 40 H 0.96997 * 119.99451 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46725 * 300.97463 * 26 24 15 42 42 H 1.09004 * 109.46905 * 60.97463 * 26 24 15 43 43 H 1.09002 * 109.47242 * 180.97222 * 26 24 15 44 44 H 1.09008 * 109.49415 * 307.21571 * 27 10 9 45 45 H 1.09002 * 109.49655 * 67.26633 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5273 1.2784 0.0006 6 6 4.3913 0.2183 0.0006 7 7 5.6543 0.5624 0.0007 8 6 5.9283 1.8271 0.0011 9 6 7.3207 2.4034 0.0018 10 7 7.7734 2.5917 -1.3831 11 6 7.9219 1.3009 -2.0684 12 6 8.2173 1.5452 -3.5521 13 1 8.4402 0.5987 -4.0447 14 6 7.0035 2.1973 -4.2172 15 7 9.3787 2.4417 -3.6558 16 6 10.4478 2.1181 -4.4480 17 1 11.4278 2.5099 -4.2188 18 6 10.2720 1.2865 -5.5454 19 7 9.0656 1.0849 -6.0318 20 14 11.7475 0.4537 -6.3321 21 1 11.9765 -0.8628 -5.6843 22 1 11.4892 0.2543 -7.7808 23 1 12.9496 1.3075 -6.1566 24 6 9.3614 3.6947 -2.8859 25 1 8.6086 4.3687 -3.2946 26 6 10.7379 4.3593 -2.9548 27 6 9.0210 3.3658 -1.4285 28 16 4.4918 2.7532 0.0081 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0613 -0.8101 0.0008 33 1 7.3160 3.3643 0.5162 34 1 7.9967 1.7197 0.5151 35 1 8.7449 0.7439 -1.6207 36 1 6.9993 0.7288 -1.9707 37 1 7.2226 2.3856 -5.2682 38 1 6.1446 1.5309 -4.1389 39 1 6.7787 3.1400 -3.7184 40 1 8.9428 0.5035 -6.7984 41 1 11.4896 3.6805 -2.5518 42 1 10.9774 4.5921 -3.9924 43 1 10.7272 5.2786 -2.3693 44 1 8.8955 4.2913 -0.8665 45 1 9.8286 2.7802 -0.9891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333718476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:18 Heat of formation + Delta-G solvation = 4.086808 kcal Electronic energy + Delta-G solvation = -27801.010855 eV Core-core repulsion = 23947.031157 eV Total energy + Delta-G solvation = -3853.979697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.62087 -39.76172 -38.42195 -36.64128 -35.03109 -32.61991 -31.78462 -30.93645 -28.79163 -27.71881 -27.14619 -26.00466 -24.91482 -23.73846 -22.56190 -21.98930 -20.74634 -20.08056 -18.58661 -18.21135 -17.51463 -16.71236 -16.66061 -16.30429 -15.61673 -14.97215 -14.87354 -14.45273 -14.32786 -14.09902 -13.90009 -13.71185 -13.41371 -13.11764 -12.92855 -12.86460 -12.50700 -11.97874 -11.85303 -11.63093 -11.54581 -11.24973 -11.09646 -11.08161 -10.96363 -10.90679 -10.62334 -10.52814 -10.45465 -10.00993 -9.90808 -9.77474 -9.64021 -9.41821 -9.27123 -9.01869 -8.45362 -7.92675 -6.62327 -5.73733 -3.14689 -0.01544 0.91260 1.54942 2.08752 2.61040 2.82554 3.39372 3.46683 3.47411 3.89240 4.40312 4.52003 4.58564 4.78970 4.81886 4.89944 5.02545 5.24037 5.25414 5.30287 5.41079 5.51249 5.76737 5.83493 5.89054 6.00656 6.06353 6.10167 6.25424 6.29924 6.37639 6.42808 6.64312 6.84316 6.95042 7.02212 7.10708 7.23882 7.38698 7.41209 7.45252 7.54584 7.74720 7.84602 7.97105 8.48060 9.26567 9.89123 10.46625 11.33653 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.002976 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.227460 B = 9404.765349 C =10286.116124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.553 3.447 4 O -0.508 6.508 5 C -0.323 4.323 6 C 0.137 3.863 7 N -0.481 5.481 8 C 0.081 3.919 9 C 0.117 3.883 10 N -0.525 5.525 11 C 0.041 3.959 12 C 0.199 3.801 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.584 5.584 16 C -0.249 4.249 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.281 1.281 24 C 0.172 3.828 25 H 0.034 0.966 26 C -0.137 4.137 27 C 0.050 3.950 28 S 0.262 5.738 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.189 0.811 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.032 0.968 40 H 0.252 0.748 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.577 0.738 14.782 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.266 6.266 3 C 0.396 3.604 4 O -0.397 6.397 5 C -0.446 4.446 6 C -0.025 4.025 7 N -0.196 5.196 8 C -0.192 4.192 9 C -0.014 4.014 10 N -0.250 5.250 11 C -0.088 4.088 12 C 0.092 3.908 13 H 0.114 0.886 14 C -0.193 4.193 15 N -0.307 5.307 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.542 5.542 20 Si 0.729 3.271 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.065 3.935 25 H 0.052 0.948 26 C -0.195 4.195 27 C -0.079 4.079 28 S 0.522 5.478 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.205 0.795 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.899 2.004 14.386 18.777 hybrid contribution 0.678 -1.991 -0.109 2.107 sum -11.221 0.012 14.277 18.159 Atomic orbital electron populations 1.23322 0.75488 1.03943 1.02791 1.86569 1.23776 1.31803 1.84482 1.19364 0.86624 0.81790 0.72604 1.90903 1.66517 1.35723 1.46594 1.24962 0.95640 0.98951 1.25032 1.22667 0.85802 1.00408 0.93653 1.66219 1.19801 1.16324 1.17221 1.27618 1.01704 0.91870 0.98011 1.20785 0.87298 0.99883 0.93424 1.62052 1.32215 1.20209 1.10546 1.22951 0.99423 0.88158 0.98284 1.20411 0.86528 0.95789 0.88100 0.88628 1.21946 0.96351 0.98343 1.02653 1.44300 1.18381 1.16590 1.51470 1.19197 0.87768 1.26854 1.04018 0.91108 1.24992 0.96157 1.02274 0.96243 1.70018 1.20032 1.39646 1.24509 0.86353 0.82566 0.79897 0.78308 1.21677 1.21926 1.20638 1.20445 0.94978 0.89253 0.88826 0.94821 1.21806 0.97448 0.98364 1.01930 1.22734 0.88812 0.96129 1.00263 1.84040 0.95575 1.06143 1.62078 0.91606 0.87725 0.91735 0.79465 0.88784 0.91570 0.95410 0.91481 0.90818 0.96365 0.94913 0.93811 0.92889 0.91776 0.94197 0.91865 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.77 10.37 -40.98 -0.42 -4.20 16 3 C 0.55 7.18 7.92 34.06 0.27 7.45 16 4 O -0.51 -7.63 16.76 -19.35 -0.32 -7.96 16 5 C -0.32 -4.17 6.51 -36.79 -0.24 -4.41 16 6 C 0.14 1.71 11.20 -18.48 -0.21 1.50 16 7 N -0.48 -6.88 9.50 -11.26 -0.11 -6.98 16 8 C 0.08 1.10 6.04 -13.30 -0.08 1.02 16 9 C 0.12 1.56 5.54 -4.97 -0.03 1.54 16 10 N -0.52 -8.79 4.11 -235.76 -0.97 -9.76 16 11 C 0.04 0.80 4.86 -3.70 -0.02 0.78 16 12 C 0.20 4.61 2.36 -67.49 -0.16 4.45 16 13 H 0.10 2.55 6.10 -51.93 -0.32 2.24 16 14 C -0.13 -3.06 8.96 37.15 0.33 -2.73 16 15 N -0.58 -13.88 2.73 -157.01 -0.43 -14.31 16 16 C -0.25 -6.48 8.73 -15.06 -0.13 -6.61 16 17 H 0.07 1.81 6.16 -52.48 -0.32 1.49 16 18 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 19 N -0.90 -25.03 9.80 55.49 0.54 -24.49 16 20 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.17 3.42 3.25 -67.49 -0.22 3.20 16 25 H 0.03 0.72 7.64 -51.93 -0.40 0.32 16 26 C -0.14 -2.45 7.93 37.16 0.29 -2.16 16 27 C 0.05 0.83 4.91 -3.70 -0.02 0.81 16 28 S 0.26 3.29 23.00 -107.50 -2.47 0.81 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.19 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.09 1.00 7.97 -51.93 -0.41 0.58 16 34 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 37 H 0.07 1.91 6.91 -51.93 -0.36 1.55 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.71 7.08 -51.93 -0.37 0.35 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.05 0.96 7.54 -51.93 -0.39 0.57 16 42 H 0.06 1.24 7.57 -51.93 -0.39 0.85 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.87 7.99 -51.92 -0.41 0.46 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -30.34 373.66 -9.45 -39.78 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.64 Total: -1.03 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 0.78 Total: 6.15 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.96 Total: -55.54 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.75 Total: -12.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.47 Total: 0.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.34 -9.45 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333718476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.870 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds