Wall clock time and date at job start Wed Apr 1 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34878 * 116.99926 * 2 1 4 4 O 1.21609 * 120.00478 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99813 * 179.97438 * 3 2 1 6 6 C 1.36762 * 126.18097 * 0.02562 * 5 3 2 7 7 N 1.30904 * 113.93831 * 179.97438 * 6 5 3 8 8 C 1.29397 * 117.46621 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.71059 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46863 * 90.02542 * 9 8 7 11 11 C 1.46898 * 110.99999 * 294.30523 * 10 9 8 12 12 C 1.53239 * 109.33591 * 172.74645 * 11 10 9 13 13 H 1.09005 * 109.78681 * 173.63315 * 12 11 10 14 14 C 1.52994 * 109.63048 * 294.11842 * 12 11 10 15 15 N 1.47083 * 108.52233 * 53.83287 * 12 11 10 16 16 C 1.36938 * 120.88335 * 128.79133 * 15 12 11 17 17 H 1.08004 * 119.99767 * 206.34904 * 16 15 12 18 18 C 1.38810 * 119.99833 * 26.34883 * 16 15 12 19 19 N 1.31623 * 120.00136 * 17.41531 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 197.41223 * 18 16 15 21 21 H 1.48500 * 109.47332 * 90.00155 * 20 18 16 22 22 H 1.48501 * 109.46919 * 209.99988 * 20 18 16 23 23 H 1.48493 * 109.47288 * 329.99863 * 20 18 16 24 24 C 1.47075 * 118.23478 * 308.80855 * 15 12 11 25 25 H 1.08996 * 109.79638 * 291.38468 * 24 15 12 26 26 C 1.53005 * 109.62978 * 170.89593 * 24 15 12 27 27 C 1.46898 * 110.99877 * 170.00315 * 10 9 8 28 28 S 1.70924 * 110.58523 * 0.23075 * 8 7 6 29 29 H 1.09000 * 109.47172 * 59.99418 * 1 2 3 30 30 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47281 * 300.00266 * 1 2 3 32 32 H 1.08003 * 123.02653 * 359.96579 * 6 5 3 33 33 H 1.08997 * 109.47337 * 210.02386 * 9 8 7 34 34 H 1.08997 * 109.47168 * 330.03176 * 9 8 7 35 35 H 1.09001 * 109.49337 * 292.70265 * 11 10 9 36 36 H 1.08996 * 109.49410 * 52.78965 * 11 10 9 37 37 H 1.08998 * 109.47230 * 179.03324 * 14 12 11 38 38 H 1.09000 * 109.47124 * 299.03152 * 14 12 11 39 39 H 1.08996 * 109.47088 * 59.03157 * 14 12 11 40 40 H 0.96997 * 119.99451 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46725 * 300.97463 * 26 24 15 42 42 H 1.09004 * 109.46905 * 60.97463 * 26 24 15 43 43 H 1.09002 * 109.47242 * 180.97222 * 26 24 15 44 44 H 1.09008 * 109.49415 * 307.21571 * 27 10 9 45 45 H 1.09002 * 109.49655 * 67.26633 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5273 1.2784 0.0006 6 6 4.3913 0.2183 0.0006 7 7 5.6543 0.5624 0.0007 8 6 5.9283 1.8271 0.0011 9 6 7.3207 2.4034 0.0018 10 7 7.7734 2.5917 -1.3831 11 6 7.9219 1.3009 -2.0684 12 6 8.2173 1.5452 -3.5521 13 1 8.4402 0.5987 -4.0447 14 6 7.0035 2.1973 -4.2172 15 7 9.3787 2.4417 -3.6558 16 6 10.4478 2.1181 -4.4480 17 1 11.4278 2.5099 -4.2188 18 6 10.2720 1.2865 -5.5454 19 7 9.0656 1.0849 -6.0318 20 14 11.7475 0.4537 -6.3321 21 1 11.9765 -0.8628 -5.6843 22 1 11.4892 0.2543 -7.7808 23 1 12.9496 1.3075 -6.1566 24 6 9.3614 3.6947 -2.8859 25 1 8.6086 4.3687 -3.2946 26 6 10.7379 4.3593 -2.9548 27 6 9.0210 3.3658 -1.4285 28 16 4.4918 2.7532 0.0081 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0613 -0.8101 0.0008 33 1 7.3160 3.3643 0.5162 34 1 7.9967 1.7197 0.5151 35 1 8.7449 0.7439 -1.6207 36 1 6.9993 0.7288 -1.9707 37 1 7.2226 2.3856 -5.2682 38 1 6.1446 1.5309 -4.1389 39 1 6.7787 3.1400 -3.7184 40 1 8.9428 0.5035 -6.7984 41 1 11.4896 3.6805 -2.5518 42 1 10.9774 4.5921 -3.9924 43 1 10.7272 5.2786 -2.3693 44 1 8.8955 4.2913 -0.8665 45 1 9.8286 2.7802 -0.9891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333718476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:17 Heat of formation + Delta-G solvation = -14.615728 kcal Electronic energy + Delta-G solvation = -27801.821857 eV Core-core repulsion = 23947.031157 eV Total energy + Delta-G solvation = -3854.790700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57246 -40.82863 -39.88024 -37.57050 -36.56449 -34.27986 -33.38773 -32.26202 -30.09583 -29.15821 -28.06514 -27.53807 -26.37245 -25.28005 -23.69057 -23.27930 -22.33180 -21.06033 -20.32887 -19.22499 -18.49224 -18.04542 -17.60994 -17.53628 -17.20346 -16.49594 -16.15782 -15.67462 -15.63305 -15.48160 -15.35767 -14.86124 -14.76728 -14.47514 -14.20666 -14.10514 -13.57746 -13.36575 -13.20220 -13.07252 -12.86240 -12.79008 -12.65955 -12.56424 -12.24913 -12.23666 -12.17284 -12.06111 -11.88283 -11.82922 -11.61929 -11.26876 -11.05228 -10.73726 -10.63046 -10.43839 -10.04071 -9.30651 -8.53107 -7.75498 -5.17168 -1.01220 -0.04386 0.56104 1.08619 1.48006 1.50469 1.57136 1.76327 1.83760 2.56316 2.85965 3.17308 3.38759 3.64569 3.68391 3.78938 4.10937 4.21163 4.28177 4.31119 4.32767 4.36248 4.51438 4.59745 4.66199 4.67379 4.70266 4.80966 4.90931 4.92036 4.94188 5.01007 5.09809 5.13594 5.23685 5.31386 5.48810 5.58651 5.71768 5.77735 5.97198 6.11558 6.19455 6.45175 6.50307 6.56086 7.27011 7.98805 8.51115 9.29518 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.002976 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.227460 B = 9404.765349 C =10286.116124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.554 3.446 4 O -0.534 6.534 5 C -0.335 4.335 6 C 0.138 3.862 7 N -0.502 5.502 8 C 0.069 3.931 9 C 0.119 3.881 10 N -0.531 5.531 11 C 0.062 3.938 12 C 0.197 3.803 13 H 0.054 0.946 14 C -0.114 4.114 15 N -0.600 5.600 16 C -0.247 4.247 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.924 5.924 20 Si 0.954 3.046 21 H -0.293 1.293 22 H -0.301 1.301 23 H -0.271 1.271 24 C 0.162 3.838 25 H 0.021 0.979 26 C -0.129 4.129 27 C 0.059 3.941 28 S 0.284 5.716 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.209 0.791 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.015 0.985 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.023 0.977 39 H 0.040 0.960 40 H 0.243 0.757 41 H 0.048 0.952 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 1.452 17.013 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.399 3.601 4 O -0.426 6.426 5 C -0.458 4.458 6 C -0.023 4.023 7 N -0.218 5.218 8 C -0.203 4.203 9 C -0.011 4.011 10 N -0.256 5.256 11 C -0.067 4.067 12 C 0.090 3.910 13 H 0.072 0.928 14 C -0.173 4.173 15 N -0.323 5.323 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.220 1.220 22 H -0.228 1.228 23 H -0.195 1.195 24 C 0.056 3.944 25 H 0.038 0.962 26 C -0.186 4.186 27 C -0.070 4.070 28 S 0.543 5.457 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.044 2.730 16.650 20.730 hybrid contribution 0.624 -2.190 -0.753 2.399 sum -11.420 0.539 15.897 19.581 Atomic orbital electron populations 1.23669 0.73553 1.06196 1.02898 1.86566 1.25657 1.30547 1.83827 1.19418 0.86645 0.82048 0.71978 1.90887 1.67035 1.36634 1.48074 1.25126 0.95930 0.99394 1.25358 1.22972 0.85200 1.01333 0.92814 1.66253 1.20697 1.16956 1.17851 1.27706 1.02249 0.92044 0.98338 1.20909 0.86989 1.01980 0.91221 1.61928 1.32331 1.18375 1.12974 1.22503 0.98752 0.89598 0.95893 1.20237 0.86476 0.93951 0.90291 0.92814 1.21705 0.96544 0.98729 1.00331 1.44530 1.17900 1.18320 1.51600 1.19490 0.88733 1.25887 1.03601 0.90761 1.25637 0.98114 1.03635 0.97344 1.70185 1.21540 1.40476 1.24869 0.85453 0.80468 0.78832 0.76799 1.22022 1.22841 1.19538 1.20699 0.95900 0.87470 0.90304 0.96155 1.21712 0.95935 0.99827 1.01172 1.22613 0.88647 0.97818 0.97944 1.83922 0.94758 1.05663 1.61324 0.91862 0.84433 0.91327 0.77427 0.85210 0.91177 0.96696 0.91480 0.94383 0.95818 0.94110 0.94769 0.93338 0.94103 0.90218 0.87740 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.35 -7.00 10.37 -57.92 -0.60 -7.60 16 3 C 0.55 13.78 7.92 69.98 0.55 14.33 16 4 O -0.53 -15.63 16.76 19.48 0.33 -15.30 16 5 C -0.34 -8.19 6.51 24.08 0.16 -8.03 16 6 C 0.14 3.25 11.20 84.48 0.95 4.19 16 7 N -0.50 -13.54 9.50 -189.53 -1.80 -15.34 16 8 C 0.07 1.73 6.04 88.47 0.53 2.26 16 9 C 0.12 2.81 5.54 85.56 0.47 3.28 16 10 N -0.53 -16.53 4.11 -899.81 -3.69 -20.23 16 11 C 0.06 2.39 4.86 86.38 0.42 2.81 16 12 C 0.20 9.32 2.36 44.96 0.11 9.43 16 13 H 0.05 2.99 6.10 -2.38 -0.01 2.98 16 14 C -0.11 -5.31 8.96 71.98 0.65 -4.67 16 15 N -0.60 -28.65 2.73 -650.64 -1.78 -30.43 16 16 C -0.25 -13.00 8.73 84.03 0.73 -12.26 16 17 H 0.07 3.79 6.16 -2.91 -0.02 3.77 16 18 C -0.05 -2.86 4.93 84.86 0.42 -2.44 16 19 N -0.92 -53.58 9.80 21.65 0.21 -53.37 16 20 Si 0.95 44.94 29.59 68.60 2.03 46.97 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.16 6.20 3.25 44.96 0.15 6.35 16 25 H 0.02 0.85 7.64 -2.39 -0.02 0.83 16 26 C -0.13 -4.33 7.93 71.98 0.57 -3.76 16 27 C 0.06 1.76 4.91 86.38 0.42 2.18 16 28 S 0.28 6.56 23.00 -56.49 -1.30 5.26 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.13 2.14 7.97 -2.39 -0.02 2.12 16 34 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.07 2.58 6.33 -2.39 -0.02 2.56 16 37 H 0.04 2.02 6.91 -2.39 -0.02 2.01 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.04 1.78 7.08 -2.39 -0.02 1.76 16 40 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.05 1.66 7.54 -2.38 -0.02 1.64 16 42 H 0.04 1.54 7.57 -2.38 -0.02 1.52 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.10 2.34 7.99 -2.38 -0.02 2.32 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.69 373.66 1.72 -65.97 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.00 Total: 8.80 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 7.33 Total: 15.27 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -7.06 Total: -119.37 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.27 Total: -22.90 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.30 Total: 5.26 kcal Total: -67.69 1.72 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333718476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.349 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds