Wall clock time and date at job start Wed Apr 1 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.47206 * 109.47566 * 120.00005 * 2 1 3 5 5 N 2.60801 * 109.47514 * 120.00228 * 2 1 3 6 6 C 1.50705 * 109.47159 * 240.00328 * 2 1 3 7 7 O 1.21283 * 119.99352 * 274.91838 * 6 2 1 8 8 N 1.34766 * 120.00473 * 94.91457 * 6 2 1 9 9 C 1.47424 * 125.65433 * 174.96519 * 8 6 2 10 10 C 1.54904 * 104.83486 * 204.09583 * 9 8 6 11 11 H 1.08990 * 111.00939 * 81.06022 * 10 9 8 12 12 C 1.53004 * 111.00412 * 204.91378 * 10 9 8 13 13 N 1.46490 * 109.47121 * 287.19620 * 12 10 9 14 14 C 1.34778 * 120.00088 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00124 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99967 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99723 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00389 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00449 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00422 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99442 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47061 * 90.00263 * 22 20 18 24 24 H 1.48498 * 109.47375 * 209.99947 * 22 20 18 25 25 H 1.48503 * 109.47212 * 330.00448 * 22 20 18 26 26 C 1.55158 * 101.58136 * 322.98520 * 10 9 8 27 27 H 1.09004 * 110.72530 * 277.14460 * 26 10 9 28 28 C 1.52998 * 110.87611 * 153.93913 * 26 10 9 29 29 C 1.47022 * 125.64484 * 354.92096 * 8 6 2 30 30 H 1.08995 * 109.47538 * 64.98191 * 1 2 3 31 31 H 1.09000 * 109.46814 * 184.98209 * 1 2 3 32 32 H 1.09004 * 109.46817 * 304.97621 * 1 2 3 33 33 H 1.09001 * 110.36018 * 322.93033 * 9 8 6 34 34 H 1.08997 * 110.36882 * 85.24830 * 9 8 6 35 35 H 1.09004 * 109.46818 * 47.19298 * 12 10 9 36 36 H 1.08994 * 109.47219 * 167.19011 * 12 10 9 37 37 H 0.97000 * 120.00473 * 359.97438 * 13 12 10 38 38 H 1.08995 * 109.47094 * 299.99129 * 16 14 13 39 39 H 1.09000 * 109.46968 * 59.99884 * 16 14 13 40 40 H 0.96999 * 120.00448 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.47059 * 302.55063 * 28 26 10 42 42 H 1.09002 * 109.47291 * 62.54379 * 28 26 10 43 43 H 1.08998 * 109.47410 * 182.55133 * 28 26 10 44 44 H 1.09002 * 109.88537 * 59.56131 * 29 8 6 45 45 H 1.08994 * 109.88714 * 298.39145 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2295 2.1293 6 6 2.0323 -0.7104 -1.2305 7 8 2.1495 -1.9175 -1.2284 8 7 2.3512 -0.0043 -2.3333 9 6 2.9496 -0.5550 -3.5630 10 6 3.6694 0.6458 -4.2259 11 1 4.6425 0.8199 -3.7670 12 6 3.8067 0.4375 -5.7355 13 7 4.8246 -0.5829 -5.9970 14 6 5.1176 -0.9331 -7.2651 15 8 4.5383 -0.4036 -8.1897 16 6 6.1653 -1.9825 -7.5341 17 16 6.3276 -2.2290 -9.3199 18 6 7.5799 -3.4682 -9.3451 19 1 7.9961 -3.8343 -8.4182 20 6 8.0317 -3.9739 -10.5562 21 7 8.9676 -4.8992 -10.5751 22 14 7.3115 -3.3411 -12.1595 23 1 8.1039 -2.1779 -12.6332 24 1 7.3545 -4.4182 -13.1808 25 1 5.9034 -2.9239 -11.9390 26 6 2.6905 1.8079 -3.9117 27 1 1.8775 1.8343 -4.6373 28 6 3.4278 3.1481 -3.8789 29 6 2.1591 1.4426 -2.5095 30 1 -0.3634 0.4346 -0.9312 31 1 -0.3633 -1.0238 0.0892 32 1 -0.3633 0.5891 0.8421 33 1 3.6664 -1.3387 -3.3179 34 1 2.1729 -0.9428 -4.2221 35 1 2.8510 0.1109 -6.1456 36 1 4.1027 1.3750 -6.2061 37 1 5.2883 -1.0062 -5.2576 38 1 7.1207 -1.6557 -7.1239 39 1 5.8694 -2.9202 -7.0637 40 1 9.2831 -5.2528 -11.4214 41 1 4.2275 3.1048 -3.1395 42 1 3.8525 3.3533 -4.8616 43 1 2.7290 3.9409 -3.6123 44 1 2.7183 1.9863 -1.7480 45 1 1.0993 1.6872 -2.4395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345979904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:58 Heat of formation + Delta-G solvation = -52.536920 kcal Electronic energy + Delta-G solvation = -26058.143889 eV Core-core repulsion = 22201.708803 eV Total energy + Delta-G solvation = -3856.435086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05175 -39.50908 -38.57295 -36.98742 -35.03537 -33.93514 -33.18362 -32.44487 -31.08149 -29.21969 -27.11999 -26.49097 -25.63812 -25.26946 -22.58043 -21.12829 -20.63511 -20.24986 -18.13708 -18.04596 -17.83659 -16.90697 -16.37740 -15.93814 -15.76668 -15.52360 -15.17460 -14.95664 -14.61594 -14.53091 -14.12978 -13.80220 -13.77989 -13.50355 -13.36831 -13.22613 -13.17750 -13.02833 -12.89230 -12.80307 -12.68860 -12.38755 -12.17561 -12.06561 -11.97315 -11.49698 -11.35433 -11.27132 -11.18887 -11.01554 -10.61298 -10.39810 -9.86739 -9.58074 -9.26276 -9.07813 -8.99782 -8.51683 -6.92938 -6.29237 -4.01287 1.78121 1.97998 2.27542 2.57797 2.72934 2.92551 3.24720 3.28172 3.32547 3.49527 3.58549 3.73401 3.80514 4.10637 4.14907 4.21553 4.27199 4.32435 4.55927 4.65307 4.73122 4.76968 4.83924 4.87336 4.92540 4.97830 5.09639 5.10932 5.23697 5.24649 5.35469 5.36439 5.38918 5.49609 5.52126 5.61614 5.71766 5.75053 5.81869 6.00205 6.43262 6.79802 7.02972 7.47480 7.52189 7.93700 8.41503 8.42891 9.16725 10.79980 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.001971 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.856050 B =14199.982104 C =15201.220166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.133 0.867 4 C 0.216 3.784 5 N -0.407 5.407 6 C 0.538 3.462 7 O -0.520 6.520 8 N -0.615 5.615 9 C 0.109 3.891 10 C -0.111 4.111 11 H 0.096 0.904 12 C 0.134 3.866 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.094 4.094 27 H 0.094 0.906 28 C -0.145 4.145 29 C 0.097 3.903 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 19.479 20.681 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.150 0.850 4 C -0.103 4.103 5 N -0.082 5.082 6 C 0.323 3.677 7 O -0.395 6.395 8 N -0.349 5.349 9 C -0.013 4.013 10 C -0.131 4.131 11 H 0.114 0.886 12 C 0.010 3.990 13 N -0.394 5.394 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.276 4.276 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.114 4.114 27 H 0.113 0.887 28 C -0.203 4.203 29 C -0.025 4.025 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.935 18.719 20.509 33.056 hybrid contribution 0.760 -0.509 0.304 0.964 sum -17.175 18.210 20.813 32.554 Atomic orbital electron populations 1.21749 0.89018 1.04735 1.04382 1.18789 0.99258 0.99650 0.85408 0.84973 1.28112 0.94086 0.94022 0.94103 1.81239 1.07628 1.07620 1.11698 1.19624 0.78057 0.87112 0.82892 1.90824 1.52316 1.13597 1.82739 1.48377 1.62344 1.09338 1.14828 1.22421 0.97574 0.96440 0.84815 1.22745 0.99846 0.94741 0.95730 0.88550 1.21194 0.92601 0.92517 0.92735 1.45974 1.42305 1.42882 1.08200 1.20276 0.83071 0.82732 0.82119 1.90702 1.51544 1.53864 1.43221 1.23287 0.99983 0.99963 1.04348 1.84767 1.53280 1.53581 0.99927 1.22316 1.22977 1.24053 0.97586 0.89373 1.24723 0.93915 0.93794 0.98938 1.69933 1.27455 1.26909 1.27333 0.86729 0.82451 0.79381 0.83241 1.19219 1.19950 1.15922 1.22203 0.98331 0.95026 0.95801 0.88724 1.21796 1.00257 0.95154 1.03055 1.22323 1.01588 0.80485 0.98137 0.89916 0.90635 0.89996 0.89811 0.90374 0.91085 0.90773 0.76609 0.88478 0.88398 0.91931 0.92136 0.91449 0.91892 0.90557 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.34 9.13 37.15 0.34 0.00 16 2 C -0.01 -0.03 2.73 -94.56 -0.26 -0.29 16 3 H 0.13 0.09 6.91 -51.93 -0.36 -0.27 16 4 C 0.22 1.84 14.15 -20.76 -0.29 1.55 16 5 N -0.41 -4.78 18.54 42.15 0.78 -4.00 16 6 C 0.54 4.17 6.82 -10.99 -0.07 4.09 16 7 O -0.52 -6.66 16.74 5.55 0.09 -6.57 16 8 N -0.61 -3.49 3.33 -170.52 -0.57 -4.06 16 9 C 0.11 0.73 6.30 -2.53 -0.02 0.72 16 10 C -0.11 -0.57 2.50 -88.47 -0.22 -0.80 16 11 H 0.10 0.47 8.05 -51.93 -0.42 0.06 16 12 C 0.13 1.12 5.13 -4.05 -0.02 1.10 16 13 N -0.74 -8.09 5.50 -60.30 -0.33 -8.42 16 14 C 0.53 8.80 7.85 -10.98 -0.09 8.71 16 15 O -0.52 -10.56 15.86 5.56 0.09 -10.47 16 16 C -0.13 -2.34 6.16 36.01 0.22 -2.12 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.09 2.77 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 22 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C -0.09 -0.29 3.01 -88.78 -0.27 -0.56 16 27 H 0.09 0.28 8.04 -51.93 -0.42 -0.13 16 28 C -0.15 -0.37 9.15 37.16 0.34 -0.03 16 29 C 0.10 0.22 5.80 -3.06 -0.02 0.20 16 30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 33 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.08 0.58 7.91 -51.93 -0.41 0.16 16 35 H 0.07 0.65 7.96 -51.93 -0.41 0.24 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 3.42 8.47 -40.82 -0.35 3.08 16 38 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 0.15 8.12 -51.93 -0.42 -0.27 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.08 0.06 7.29 -51.93 -0.38 -0.32 16 45 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -38.97 395.89 -7.01 -45.98 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.97 Total: -4.71 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.14 Total: 0.62 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.66 Total: -42.21 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.18 Total: -17.04 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.97 -7.01 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345979904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.552 kcal (2) G-P(sol) polarization free energy of solvation -38.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds