Wall clock time and date at job start Wed Apr 1 2020 00:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.47206 * 109.47566 * 120.00005 * 2 1 3 5 5 N 2.60801 * 109.47514 * 120.00228 * 2 1 3 6 6 C 1.50705 * 109.47159 * 240.00328 * 2 1 3 7 7 O 1.21283 * 119.99352 * 274.91838 * 6 2 1 8 8 N 1.34766 * 120.00473 * 94.91457 * 6 2 1 9 9 C 1.47424 * 125.65433 * 174.96519 * 8 6 2 10 10 C 1.54904 * 104.83486 * 204.09583 * 9 8 6 11 11 H 1.08990 * 111.00939 * 81.06022 * 10 9 8 12 12 C 1.53004 * 111.00412 * 204.91378 * 10 9 8 13 13 N 1.46490 * 109.47121 * 287.19620 * 12 10 9 14 14 C 1.34778 * 120.00088 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00124 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99967 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99723 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00389 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00449 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00422 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99442 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47061 * 90.00263 * 22 20 18 24 24 H 1.48498 * 109.47375 * 209.99947 * 22 20 18 25 25 H 1.48503 * 109.47212 * 330.00448 * 22 20 18 26 26 C 1.55158 * 101.58136 * 322.98520 * 10 9 8 27 27 H 1.09004 * 110.72530 * 277.14460 * 26 10 9 28 28 C 1.52998 * 110.87611 * 153.93913 * 26 10 9 29 29 C 1.47022 * 125.64484 * 354.92096 * 8 6 2 30 30 H 1.08995 * 109.47538 * 64.98191 * 1 2 3 31 31 H 1.09000 * 109.46814 * 184.98209 * 1 2 3 32 32 H 1.09004 * 109.46817 * 304.97621 * 1 2 3 33 33 H 1.09001 * 110.36018 * 322.93033 * 9 8 6 34 34 H 1.08997 * 110.36882 * 85.24830 * 9 8 6 35 35 H 1.09004 * 109.46818 * 47.19298 * 12 10 9 36 36 H 1.08994 * 109.47219 * 167.19011 * 12 10 9 37 37 H 0.97000 * 120.00473 * 359.97438 * 13 12 10 38 38 H 1.08995 * 109.47094 * 299.99129 * 16 14 13 39 39 H 1.09000 * 109.46968 * 59.99884 * 16 14 13 40 40 H 0.96999 * 120.00448 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.47059 * 302.55063 * 28 26 10 42 42 H 1.09002 * 109.47291 * 62.54379 * 28 26 10 43 43 H 1.08998 * 109.47410 * 182.55133 * 28 26 10 44 44 H 1.09002 * 109.88537 * 59.56131 * 29 8 6 45 45 H 1.08994 * 109.88714 * 298.39145 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2295 2.1293 6 6 2.0323 -0.7104 -1.2305 7 8 2.1495 -1.9175 -1.2284 8 7 2.3512 -0.0043 -2.3333 9 6 2.9496 -0.5550 -3.5630 10 6 3.6694 0.6458 -4.2259 11 1 4.6425 0.8199 -3.7670 12 6 3.8067 0.4375 -5.7355 13 7 4.8246 -0.5829 -5.9970 14 6 5.1176 -0.9331 -7.2651 15 8 4.5383 -0.4036 -8.1897 16 6 6.1653 -1.9825 -7.5341 17 16 6.3276 -2.2290 -9.3199 18 6 7.5799 -3.4682 -9.3451 19 1 7.9961 -3.8343 -8.4182 20 6 8.0317 -3.9739 -10.5562 21 7 8.9676 -4.8992 -10.5751 22 14 7.3115 -3.3411 -12.1595 23 1 8.1039 -2.1779 -12.6332 24 1 7.3545 -4.4182 -13.1808 25 1 5.9034 -2.9239 -11.9390 26 6 2.6905 1.8079 -3.9117 27 1 1.8775 1.8343 -4.6373 28 6 3.4278 3.1481 -3.8789 29 6 2.1591 1.4426 -2.5095 30 1 -0.3634 0.4346 -0.9312 31 1 -0.3633 -1.0238 0.0892 32 1 -0.3633 0.5891 0.8421 33 1 3.6664 -1.3387 -3.3179 34 1 2.1729 -0.9428 -4.2221 35 1 2.8510 0.1109 -6.1456 36 1 4.1027 1.3750 -6.2061 37 1 5.2883 -1.0062 -5.2576 38 1 7.1207 -1.6557 -7.1239 39 1 5.8694 -2.9202 -7.0637 40 1 9.2831 -5.2528 -11.4214 41 1 4.2275 3.1048 -3.1395 42 1 3.8525 3.3533 -4.8616 43 1 2.7290 3.9409 -3.6123 44 1 2.7183 1.9863 -1.7480 45 1 1.0993 1.6872 -2.4395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345979904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:57 Heat of formation + Delta-G solvation = -81.434259 kcal Electronic energy + Delta-G solvation = -26059.396972 eV Core-core repulsion = 22201.708803 eV Total energy + Delta-G solvation = -3857.688169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57763 -40.62942 -39.25864 -37.69446 -35.96172 -34.67740 -34.51852 -33.60482 -31.95096 -30.31160 -27.89453 -27.44877 -26.97401 -25.76980 -23.12040 -21.97644 -21.15716 -21.01983 -19.86788 -18.61095 -18.46014 -17.84923 -17.55424 -17.10959 -16.75826 -16.59275 -16.34498 -15.83810 -15.60446 -15.23458 -15.04605 -14.94259 -14.68567 -14.39553 -14.32265 -14.10044 -13.91154 -13.69480 -13.53782 -13.42652 -13.34326 -13.17002 -13.06075 -12.98338 -12.79554 -12.66906 -12.53983 -12.41334 -11.89846 -11.83364 -11.72331 -11.55157 -11.17049 -10.98595 -10.95710 -10.54148 -10.11622 -9.73248 -8.99243 -8.51549 -6.22423 0.99814 1.20039 1.31751 1.44963 1.47155 1.56881 1.58096 1.64831 2.05651 2.23287 2.27452 2.71558 2.79184 2.86554 3.29443 3.45996 3.63065 3.75873 3.90043 3.94250 4.03334 4.22481 4.25756 4.28362 4.36746 4.47984 4.53198 4.71535 4.73654 4.73946 4.79621 4.84210 4.85710 4.97972 5.10001 5.15918 5.19680 5.25826 5.41944 5.43366 5.57686 5.70322 6.11242 6.30640 6.44700 6.45827 6.93314 6.94357 7.19463 8.60890 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.001971 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.856050 B =14199.982104 C =15201.220166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 H 0.183 0.817 4 C 0.238 3.762 5 N -0.474 5.474 6 C 0.533 3.467 7 O -0.584 6.584 8 N -0.607 5.607 9 C 0.105 3.895 10 C -0.098 4.098 11 H 0.105 0.895 12 C 0.133 3.867 13 N -0.715 5.715 14 C 0.537 3.463 15 O -0.560 6.560 16 C -0.115 4.115 17 S -0.172 6.172 18 C -0.531 4.531 19 H 0.060 0.940 20 C 0.043 3.957 21 N -0.918 5.918 22 Si 0.917 3.083 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.235 1.235 26 C -0.088 4.088 27 H 0.098 0.902 28 C -0.143 4.143 29 C 0.091 3.909 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.277 0.723 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 22.858 21.431 36.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.200 0.800 4 C -0.080 4.080 5 N -0.150 5.150 6 C 0.320 3.680 7 O -0.464 6.464 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.117 4.117 11 H 0.124 0.876 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.322 3.678 15 O -0.439 6.439 16 C -0.266 4.266 17 S 0.054 5.946 18 C -0.678 4.678 19 H 0.078 0.922 20 C -0.162 4.162 21 N -0.556 5.556 22 Si 0.739 3.261 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.159 1.159 26 C -0.107 4.107 27 H 0.116 0.884 28 C -0.200 4.200 29 C -0.030 4.030 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.703 22.147 21.305 36.505 hybrid contribution 1.290 -1.515 0.182 1.998 sum -18.413 20.632 21.487 35.020 Atomic orbital electron populations 1.21833 0.87139 1.03970 1.06749 1.19133 1.00492 1.00820 0.81727 0.80022 1.28927 0.92366 0.92640 0.94071 1.81248 1.09926 1.09692 1.14145 1.20185 0.77286 0.86517 0.84005 1.90804 1.55215 1.16459 1.83894 1.48424 1.60913 1.10857 1.13767 1.22363 0.97186 0.96764 0.85479 1.22628 1.00878 0.95221 0.92998 0.87645 1.21379 0.91221 0.91357 0.95095 1.45798 1.41974 1.42473 1.06605 1.19846 0.82387 0.82123 0.83420 1.90690 1.53019 1.55347 1.44804 1.23301 1.02013 1.01762 0.99511 1.84637 1.51754 1.52108 1.06082 1.22478 1.23772 1.24875 0.96688 0.92167 1.25616 0.94299 0.94019 1.02310 1.70018 1.28797 1.28179 1.28579 0.85831 0.81627 0.79285 0.79403 1.18532 1.18454 1.15930 1.22211 0.97712 0.94227 0.96558 0.88365 1.21786 1.00664 0.95071 1.02514 1.22682 1.04067 0.78093 0.98166 0.87425 0.93083 0.87670 0.91758 0.91285 0.91660 0.90674 0.74960 0.86919 0.87235 0.91382 0.91712 0.92753 0.90229 0.87839 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 9.13 71.98 0.66 0.43 16 2 C 0.00 0.01 2.73 -13.34 -0.04 -0.02 16 3 H 0.18 -0.76 6.91 -2.39 -0.02 -0.78 16 4 C 0.24 3.83 14.15 89.44 1.27 5.09 16 5 N -0.47 -11.30 18.54 20.01 0.37 -10.93 16 6 C 0.53 7.35 6.82 87.66 0.60 7.95 16 7 O -0.58 -15.25 16.74 -3.04 -0.05 -15.31 16 8 N -0.61 -5.22 3.33 -811.80 -2.70 -7.92 16 9 C 0.10 1.25 6.30 86.85 0.55 1.80 16 10 C -0.10 -0.76 2.50 -9.40 -0.02 -0.78 16 11 H 0.11 0.71 8.05 -2.39 -0.02 0.69 16 12 C 0.13 1.98 5.13 86.38 0.44 2.42 16 13 N -0.71 -14.56 5.50 -463.07 -2.55 -17.10 16 14 C 0.54 17.24 7.85 87.66 0.69 17.93 16 15 O -0.56 -22.50 15.86 -3.03 -0.05 -22.55 16 16 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 17 S -0.17 -8.62 18.55 -56.49 -1.05 -9.67 16 18 C -0.53 -30.97 10.04 67.96 0.68 -30.29 16 19 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 20 C 0.04 2.52 5.50 84.86 0.47 2.99 16 21 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 22 Si 0.92 44.91 27.74 68.60 1.90 46.81 16 23 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.46 6.74 99.48 0.67 -10.79 16 26 C -0.09 -0.20 3.01 -9.60 -0.03 -0.23 16 27 H 0.10 0.22 8.04 -2.38 -0.02 0.20 16 28 C -0.14 -0.16 9.15 71.98 0.66 0.50 16 29 C 0.09 -0.04 5.80 86.73 0.50 0.47 16 30 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.07 0.96 7.91 -2.39 -0.02 0.94 16 35 H 0.07 1.11 7.96 -2.39 -0.02 1.09 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.41 6.33 8.47 -92.71 -0.79 5.55 16 38 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 39 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.28 15.66 8.31 -92.71 -0.77 14.88 16 41 H 0.06 0.05 8.12 -2.39 -0.02 0.03 16 42 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.10 -0.50 7.29 -2.39 -0.02 -0.51 16 45 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 Total: -1.00 -90.37 395.89 3.22 -87.14 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 0.18 Total: 0.95 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.86 Total: 4.47 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.57 Total: -91.85 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.10 Total: -37.86 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -90.37 3.22 -87.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345979904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.709 kcal (2) G-P(sol) polarization free energy of solvation -90.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds