Wall clock time and date at job start Wed Apr 1 2020 00:24:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.21882 * 2 1
4 4 C 1.52863 * 109.22583 * 119.39351 * 2 1 3
5 5 N 1.47212 * 108.05594 * 167.60534 * 4 2 1
6 6 C 1.34784 * 121.29924 * 115.85580 * 5 4 2
7 7 O 1.21593 * 119.99581 * 4.11596 * 6 5 4
8 8 C 1.47532 * 120.00169 * 184.12244 * 6 5 4
9 9 C 1.39672 * 120.19486 * 309.56642 * 8 6 5
10 10 C 1.37825 * 119.91690 * 179.97438 * 9 8 6
11 11 C 1.38570 * 120.32666 * 0.02562 * 10 9 8
12 12 C 1.38025 * 120.40090 * 359.97438 * 11 10 9
13 13 C 1.38838 * 120.07293 * 0.26789 * 12 11 10
14 14 O 1.35512 * 120.16282 * 179.72537 * 13 12 11
15 15 C 1.34815 * 117.00165 * 5.94383 * 14 13 12
16 16 H 1.08003 * 119.99776 * 354.85923 * 15 14 13
17 17 C 1.38697 * 120.00371 * 174.85746 * 15 14 13
18 18 N 1.31519 * 120.00011 * 180.02562 * 17 15 14
19 19 Si 1.86804 * 119.99946 * 0.02562 * 17 15 14
20 20 H 1.48500 * 109.47137 * 89.99659 * 19 17 15
21 21 H 1.48494 * 109.47230 * 210.00065 * 19 17 15
22 22 H 1.48503 * 109.46918 * 330.00228 * 19 17 15
23 23 C 1.46795 * 117.40356 * 296.12644 * 5 4 2
24 24 C 1.50145 * 109.70553 * 43.94677 * 23 5 4
25 25 C 1.38940 * 118.81371 * 169.28307 * 24 23 5
26 26 N 1.32218 * 119.23040 * 179.11012 * 25 24 23
27 27 C 1.31810 * 120.58183 * 0.02562 * 26 25 24
28 28 N 1.31579 * 121.73431 * 0.28384 * 27 26 25
29 29 C 1.32959 * 121.10171 * 359.90178 * 28 27 26
30 30 H 1.08996 * 109.47339 * 300.60069 * 1 2 3
31 31 H 1.09000 * 109.47209 * 60.60995 * 1 2 3
32 32 H 1.09004 * 109.46814 * 180.60491 * 1 2 3
33 33 H 1.08999 * 109.74283 * 47.96922 * 4 2 1
34 34 H 1.08997 * 109.74698 * 287.24744 * 4 2 1
35 35 H 1.07998 * 120.03933 * 0.02639 * 9 8 6
36 36 H 1.08001 * 119.83599 * 180.02562 * 10 9 8
37 37 H 1.08006 * 119.80014 * 179.97438 * 11 10 9
38 38 H 1.07998 * 119.96594 * 179.97438 * 12 11 10
39 39 H 0.97003 * 119.99563 * 180.02562 * 18 17 15
40 40 H 1.09002 * 109.46670 * 164.04358 * 23 5 4
41 41 H 1.08997 * 109.46728 * 284.02187 * 23 5 4
42 42 H 1.07997 * 120.38353 * 359.13187 * 25 24 23
43 43 H 1.08004 * 119.13438 * 180.26123 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8888 1.0293 0.0000
4 6 2.0333 -0.7084 1.2576
5 7 3.4744 -0.9607 1.0933
6 6 4.3835 -0.3796 1.9010
7 8 4.0162 0.3100 2.8327
8 6 5.8242 -0.5800 1.6546
9 6 6.3348 -1.8685 1.4819
10 6 7.6816 -2.0491 1.2514
11 6 8.5335 -0.9579 1.1905
12 6 8.0432 0.3213 1.3593
13 6 6.6902 0.5220 1.5973
14 8 6.2078 1.7767 1.7688
15 6 7.0692 2.7954 1.5748
16 1 8.1113 2.5914 1.3774
17 6 6.6173 4.1056 1.6286
18 7 7.4576 5.0994 1.4389
19 14 4.8151 4.4587 1.9707
20 1 4.6053 4.5881 3.4351
21 1 4.4228 5.7245 1.3006
22 1 3.9845 3.3440 1.4483
23 6 3.8829 -1.8651 0.0116
24 6 3.1121 -1.5429 -1.2360
25 6 3.5030 -2.1273 -2.4343
26 7 2.8193 -1.8633 -3.5347
27 6 1.7785 -1.0552 -3.4999
28 7 1.3854 -0.4807 -2.3833
29 6 2.0257 -0.6956 -1.2380
30 1 -0.3634 0.5231 0.8845
31 1 -0.3633 0.5043 -0.8954
32 1 -0.3633 -1.0277 0.0108
33 1 1.5060 -1.6540 1.3835
34 1 1.8674 -0.0746 2.1287
35 1 5.6749 -2.7222 1.5280
36 1 8.0749 -3.0460 1.1177
37 1 9.5875 -1.1092 1.0099
38 1 8.7136 1.1666 1.3108
39 1 7.1415 6.0157 1.4769
40 1 4.9493 -1.7443 -0.1795
41 1 3.6808 -2.8955 0.3038
42 1 4.3553 -2.7899 -2.4665
43 1 1.2343 -0.8592 -4.4119
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001412512399.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:24:24
Heat of formation + Delta-G solvation = 25.205726 kcal
Electronic energy + Delta-G solvation = -29702.947224 eV
Core-core repulsion = 25714.439360 eV
Total energy + Delta-G solvation = -3988.507864 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.58160 -40.03361 -38.70848 -36.79786 -36.62899 -34.88159 -32.59589 -32.54126
-32.21170 -30.70072 -29.35151 -27.17747 -26.45509 -25.37998 -24.92529 -23.37476
-22.55410 -21.58511 -21.02857 -19.40768 -18.19173 -17.96460 -17.39493 -17.05157
-16.25026 -16.21424 -15.69036 -15.17922 -14.87906 -14.67140 -14.48427 -14.28537
-13.96640 -13.87054 -13.78157 -13.61828 -13.26875 -13.06851 -12.82779 -12.44070
-12.31160 -12.18364 -12.13419 -11.66935 -11.55880 -11.37311 -11.31726 -11.09729
-10.87727 -10.84081 -10.59264 -10.28171 -9.74177 -9.44977 -9.34976 -9.31478
-8.98780 -8.64019 -8.43451 -7.59433 -6.55036 -4.21407 0.73242 0.89463
1.57338 2.06602 2.92863 3.20516 3.21758 3.26713 3.43406 3.58243
3.86190 4.03904 4.19283 4.19604 4.28546 4.44489 4.57374 4.62621
4.82836 4.91199 4.98167 5.01237 5.17348 5.21970 5.28131 5.32480
5.36493 5.47161 5.56858 5.65239 5.68361 5.77732 5.86162 5.97337
5.98083 6.07420 6.25617 6.26309 6.39938 6.53318 6.75523 6.81194
6.90033 7.06339 7.37774 7.50303 7.63682 7.86618 7.92986 8.52481
8.79432 9.39357 10.50810
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.009789 B = 0.004860 C = 0.004022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2859.614157 B = 5760.013957 C = 6960.797163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.065 4.065
3 H 0.102 0.898
4 C 0.119 3.881
5 N -0.620 5.620
6 C 0.584 3.416
7 O -0.520 6.520
8 C -0.221 4.221
9 C -0.049 4.049
10 C -0.214 4.214
11 C -0.054 4.054
12 C -0.221 4.221
13 C 0.199 3.801
14 O -0.188 6.188
15 C -0.394 4.394
16 H 0.110 0.890
17 C 0.071 3.929
18 N -0.868 5.868
19 Si 0.903 3.097
20 H -0.269 1.269
21 H -0.282 1.282
22 H -0.257 1.257
23 C 0.154 3.846
24 C -0.197 4.197
25 C 0.158 3.842
26 N -0.522 5.522
27 C 0.289 3.711
28 N -0.517 5.517
29 C 0.196 3.804
30 H 0.063 0.937
31 H 0.074 0.926
32 H 0.053 0.947
33 H 0.074 0.926
34 H 0.106 0.894
35 H 0.119 0.881
36 H 0.115 0.885
37 H 0.115 0.885
38 H 0.139 0.861
39 H 0.282 0.718
40 H 0.114 0.886
41 H 0.085 0.915
42 H 0.172 0.828
43 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.073 -15.985 -5.821 19.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.085 4.085
3 H 0.120 0.880
4 C -0.004 4.004
5 N -0.355 5.355
6 C 0.375 3.625
7 O -0.395 6.395
8 C -0.225 4.225
9 C -0.068 4.068
10 C -0.233 4.233
11 C -0.072 4.072
12 C -0.240 4.240
13 C 0.142 3.858
14 O -0.090 6.090
15 C -0.469 4.469
16 H 0.127 0.873
17 C -0.134 4.134
18 N -0.504 5.504
19 Si 0.729 3.271
20 H -0.194 1.194
21 H -0.208 1.208
22 H -0.181 1.181
23 C 0.029 3.971
24 C -0.202 4.202
25 C -0.010 4.010
26 N -0.235 5.235
27 C 0.001 3.999
28 N -0.230 5.230
29 C 0.052 3.948
30 H 0.082 0.918
31 H 0.093 0.907
32 H 0.072 0.928
33 H 0.092 0.908
34 H 0.124 0.876
35 H 0.137 0.863
36 H 0.133 0.867
37 H 0.133 0.867
38 H 0.157 0.843
39 H 0.093 0.907
40 H 0.132 0.868
41 H 0.102 0.898
42 H 0.189 0.811
43 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges -9.964 -15.012 -6.073 19.014
hybrid contribution 0.051 0.186 0.612 0.642
sum -9.913 -14.825 -5.461 18.651
Atomic orbital electron populations
1.21654 0.92128 1.02187 1.03091 1.20456 0.97589 1.00420 0.90000
0.88013 1.21648 0.80265 1.00718 0.97750 1.47973 1.06357 1.48365
1.32802 1.18201 0.85519 0.77737 0.81074 1.90772 1.80988 1.37870
1.29834 1.18692 0.91726 0.92932 1.19185 1.20769 0.95608 0.94002
0.96386 1.20561 0.93356 0.98264 1.11105 1.20976 0.98925 0.92131
0.95199 1.21277 0.95133 0.98229 1.09368 1.18927 0.91156 0.84748
0.90942 1.83620 1.39693 1.11260 1.74403 1.20847 0.92298 0.83415
1.50367 0.87267 1.24470 1.00060 0.93832 0.95056 1.69624 1.35489
0.99653 1.45619 0.86182 0.83372 0.78056 0.79533 1.19439 1.20810
1.18074 1.20476 1.00112 0.93497 0.82965 1.21418 0.99123 1.01091
0.98527 1.23161 0.96703 0.94426 0.86698 1.68446 1.08039 1.16299
1.30734 1.24894 0.90520 0.88468 0.96053 1.68375 1.31557 1.24007
0.99091 1.21153 0.89258 0.90537 0.93885 0.91752 0.90748 0.92751
0.90808 0.87590 0.86348 0.86742 0.86699 0.84336 0.90744 0.86793
0.89753 0.81112 0.78869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.38 8.82 37.16 0.33 -1.05 16
2 C -0.06 -0.84 3.08 -91.98 -0.28 -1.13 16
3 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16
4 C 0.12 1.56 5.74 -3.72 -0.02 1.54 16
5 N -0.62 -9.36 2.94 -175.88 -0.52 -9.88 16
6 C 0.58 11.45 6.96 -12.47 -0.09 11.37 16
7 O -0.52 -12.23 16.07 -2.61 -0.04 -12.27 16
8 C -0.22 -4.26 4.96 -104.81 -0.52 -4.78 16
9 C -0.05 -0.73 7.50 -39.20 -0.29 -1.02 16
10 C -0.21 -3.03 10.02 -39.61 -0.40 -3.43 16
11 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16
12 C -0.22 -4.46 9.16 -39.44 -0.36 -4.82 16
13 C 0.20 4.50 6.64 -38.60 -0.26 4.25 16
14 O -0.19 -5.02 7.67 -7.08 -0.05 -5.08 16
15 C -0.39 -11.01 9.95 30.90 0.31 -10.70 16
16 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16
17 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16
18 N -0.87 -24.79 13.96 55.48 0.77 -24.01 16
19 Si 0.90 22.66 28.62 -169.99 -4.86 17.80 16
20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
22 H -0.26 -6.66 7.11 56.52 0.40 -6.26 16
23 C 0.15 1.79 4.92 -5.30 -0.03 1.76 16
24 C -0.20 -2.39 5.81 -104.80 -0.61 -3.00 16
25 C 0.16 1.72 10.94 -17.13 -0.19 1.54 16
26 N -0.52 -6.27 10.45 -14.56 -0.15 -6.42 16
27 C 0.29 3.34 12.28 -92.32 -1.13 2.21 16
28 N -0.52 -6.77 9.33 -11.00 -0.10 -6.87 16
29 C 0.20 2.62 6.24 -82.41 -0.51 2.10 16
30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16
32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16
34 H 0.11 1.53 7.06 -51.93 -0.37 1.17 16
35 H 0.12 1.35 7.10 -52.49 -0.37 0.98 16
36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16
37 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16
38 H 0.14 2.93 5.64 -52.49 -0.30 2.63 16
39 H 0.28 7.46 8.31 -40.82 -0.34 7.13 16
40 H 0.11 1.37 5.17 -51.93 -0.27 1.10 16
41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16
43 H 0.19 1.59 8.06 -52.48 -0.42 1.17 16
LS Contribution 358.16 15.07 5.40 5.40
Total: -1.00 -33.55 358.16 -9.03 -42.58
By element:
Atomic # 1 Polarization: 8.20 SS G_CDS: -4.92 Total: 3.27 kcal
Atomic # 6 Polarization: 0.03 SS G_CDS: -4.55 Total: -4.52 kcal
Atomic # 7 Polarization: -47.18 SS G_CDS: 0.00 Total: -47.18 kcal
Atomic # 8 Polarization: -17.26 SS G_CDS: -0.10 Total: -17.35 kcal
Atomic # 14 Polarization: 22.66 SS G_CDS: -4.86 Total: 17.80 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -33.55 -9.03 -42.58 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001412512399.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.788 kcal
(2) G-P(sol) polarization free energy of solvation -33.549 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds