Wall clock time and date at job start Wed Apr 1 2020 00:24:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.21882 * 2 1
4 4 C 1.52863 * 109.22583 * 119.39351 * 2 1 3
5 5 N 1.47212 * 108.05594 * 167.60534 * 4 2 1
6 6 C 1.34784 * 121.29924 * 115.85580 * 5 4 2
7 7 O 1.21593 * 119.99581 * 4.11596 * 6 5 4
8 8 C 1.47532 * 120.00169 * 184.12244 * 6 5 4
9 9 C 1.39672 * 120.19486 * 309.56642 * 8 6 5
10 10 C 1.37825 * 119.91690 * 179.97438 * 9 8 6
11 11 C 1.38570 * 120.32666 * 0.02562 * 10 9 8
12 12 C 1.38025 * 120.40090 * 359.97438 * 11 10 9
13 13 C 1.38838 * 120.07293 * 0.26789 * 12 11 10
14 14 O 1.35512 * 120.16282 * 179.72537 * 13 12 11
15 15 C 1.34815 * 117.00165 * 5.94383 * 14 13 12
16 16 H 1.08003 * 119.99776 * 354.85923 * 15 14 13
17 17 C 1.38697 * 120.00371 * 174.85746 * 15 14 13
18 18 N 1.31519 * 120.00011 * 180.02562 * 17 15 14
19 19 Si 1.86804 * 119.99946 * 0.02562 * 17 15 14
20 20 H 1.48500 * 109.47137 * 89.99659 * 19 17 15
21 21 H 1.48494 * 109.47230 * 210.00065 * 19 17 15
22 22 H 1.48503 * 109.46918 * 330.00228 * 19 17 15
23 23 C 1.46795 * 117.40356 * 296.12644 * 5 4 2
24 24 C 1.50145 * 109.70553 * 43.94677 * 23 5 4
25 25 C 1.38940 * 118.81371 * 169.28307 * 24 23 5
26 26 N 1.32218 * 119.23040 * 179.11012 * 25 24 23
27 27 C 1.31810 * 120.58183 * 0.02562 * 26 25 24
28 28 N 1.31579 * 121.73431 * 0.28384 * 27 26 25
29 29 C 1.32959 * 121.10171 * 359.90178 * 28 27 26
30 30 H 1.08996 * 109.47339 * 300.60069 * 1 2 3
31 31 H 1.09000 * 109.47209 * 60.60995 * 1 2 3
32 32 H 1.09004 * 109.46814 * 180.60491 * 1 2 3
33 33 H 1.08999 * 109.74283 * 47.96922 * 4 2 1
34 34 H 1.08997 * 109.74698 * 287.24744 * 4 2 1
35 35 H 1.07998 * 120.03933 * 0.02639 * 9 8 6
36 36 H 1.08001 * 119.83599 * 180.02562 * 10 9 8
37 37 H 1.08006 * 119.80014 * 179.97438 * 11 10 9
38 38 H 1.07998 * 119.96594 * 179.97438 * 12 11 10
39 39 H 0.97003 * 119.99563 * 180.02562 * 18 17 15
40 40 H 1.09002 * 109.46670 * 164.04358 * 23 5 4
41 41 H 1.08997 * 109.46728 * 284.02187 * 23 5 4
42 42 H 1.07997 * 120.38353 * 359.13187 * 25 24 23
43 43 H 1.08004 * 119.13438 * 180.26123 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8888 1.0293 0.0000
4 6 2.0333 -0.7084 1.2576
5 7 3.4744 -0.9607 1.0933
6 6 4.3835 -0.3796 1.9010
7 8 4.0162 0.3100 2.8327
8 6 5.8242 -0.5800 1.6546
9 6 6.3348 -1.8685 1.4819
10 6 7.6816 -2.0491 1.2514
11 6 8.5335 -0.9579 1.1905
12 6 8.0432 0.3213 1.3593
13 6 6.6902 0.5220 1.5973
14 8 6.2078 1.7767 1.7688
15 6 7.0692 2.7954 1.5748
16 1 8.1113 2.5914 1.3774
17 6 6.6173 4.1056 1.6286
18 7 7.4576 5.0994 1.4389
19 14 4.8151 4.4587 1.9707
20 1 4.6053 4.5881 3.4351
21 1 4.4228 5.7245 1.3006
22 1 3.9845 3.3440 1.4483
23 6 3.8829 -1.8651 0.0116
24 6 3.1121 -1.5429 -1.2360
25 6 3.5030 -2.1273 -2.4343
26 7 2.8193 -1.8633 -3.5347
27 6 1.7785 -1.0552 -3.4999
28 7 1.3854 -0.4807 -2.3833
29 6 2.0257 -0.6956 -1.2380
30 1 -0.3634 0.5231 0.8845
31 1 -0.3633 0.5043 -0.8954
32 1 -0.3633 -1.0277 0.0108
33 1 1.5060 -1.6540 1.3835
34 1 1.8674 -0.0746 2.1287
35 1 5.6749 -2.7222 1.5280
36 1 8.0749 -3.0460 1.1177
37 1 9.5875 -1.1092 1.0099
38 1 8.7136 1.1666 1.3108
39 1 7.1415 6.0157 1.4769
40 1 4.9493 -1.7443 -0.1795
41 1 3.6808 -2.8955 0.3038
42 1 4.3553 -2.7899 -2.4665
43 1 1.2343 -0.8592 -4.4119
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001412512399.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:24:23
Heat of formation + Delta-G solvation = 4.011503 kcal
Electronic energy + Delta-G solvation = -29703.866274 eV
Core-core repulsion = 25714.439360 eV
Total energy + Delta-G solvation = -3989.426914 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.54721 -41.45730 -40.19440 -38.25214 -37.96804 -35.91344 -34.56630 -33.63575
-33.20711 -32.05568 -30.85822 -28.15169 -27.68715 -27.16238 -25.87472 -24.60895
-23.61042 -23.10955 -22.15260 -20.70252 -19.93812 -19.30149 -18.58277 -18.31892
-17.49985 -17.43622 -16.84554 -16.66599 -16.21301 -15.94116 -15.75802 -15.63975
-15.49672 -15.32089 -14.87887 -14.75335 -14.57635 -14.32727 -14.19264 -14.05213
-13.91288 -13.29590 -13.12638 -13.02983 -12.80860 -12.64991 -12.59278 -12.45589
-12.35886 -12.18707 -11.99402 -11.57862 -11.54092 -11.02291 -10.89169 -10.37595
-10.27074 -9.84071 -9.80084 -9.17316 -8.62049 -6.31416 -0.16799 -0.00187
0.15629 0.62290 1.16626 1.22338 1.39446 1.58100 1.92514 2.16746
2.67509 2.68804 2.93499 2.96185 3.05483 3.23147 3.30792 3.49805
3.54568 3.80258 3.87688 3.96137 4.05969 4.23673 4.30983 4.36035
4.38589 4.48159 4.50452 4.52932 4.60427 4.67878 4.76927 4.78666
4.92574 4.99173 5.06052 5.20100 5.28707 5.34833 5.42040 5.47064
5.60732 5.68657 5.81622 5.91688 6.14459 6.24628 6.74069 7.04201
7.09697 7.51414 8.49047
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.009789 B = 0.004860 C = 0.004022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2859.614157 B = 5760.013957 C = 6960.797163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.063 4.063
3 H 0.062 0.938
4 C 0.119 3.881
5 N -0.613 5.613
6 C 0.575 3.425
7 O -0.575 6.575
8 C -0.224 4.224
9 C -0.037 4.037
10 C -0.176 4.176
11 C -0.047 4.047
12 C -0.243 4.243
13 C 0.155 3.845
14 O -0.234 6.234
15 C -0.397 4.397
16 H 0.094 0.906
17 C 0.025 3.975
18 N -0.910 5.910
19 Si 0.954 3.046
20 H -0.272 1.272
21 H -0.261 1.261
22 H -0.280 1.280
23 C 0.151 3.849
24 C -0.205 4.205
25 C 0.164 3.836
26 N -0.533 5.533
27 C 0.283 3.717
28 N -0.534 5.534
29 C 0.174 3.826
30 H 0.070 0.930
31 H 0.066 0.934
32 H 0.070 0.930
33 H 0.112 0.888
34 H 0.083 0.917
35 H 0.169 0.831
36 H 0.172 0.828
37 H 0.151 0.849
38 H 0.113 0.887
39 H 0.286 0.714
40 H 0.114 0.886
41 H 0.133 0.867
42 H 0.209 0.791
43 H 0.221 0.779
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.291 -21.400 -7.071 24.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.083 4.083
3 H 0.080 0.920
4 C -0.003 4.003
5 N -0.345 5.345
6 C 0.366 3.634
7 O -0.454 6.454
8 C -0.228 4.228
9 C -0.055 4.055
10 C -0.194 4.194
11 C -0.065 4.065
12 C -0.262 4.262
13 C 0.104 3.896
14 O -0.139 6.139
15 C -0.473 4.473
16 H 0.111 0.889
17 C -0.175 4.175
18 N -0.550 5.550
19 Si 0.779 3.221
20 H -0.197 1.197
21 H -0.185 1.185
22 H -0.206 1.206
23 C 0.028 3.972
24 C -0.209 4.209
25 C -0.004 4.004
26 N -0.246 5.246
27 C -0.004 4.004
28 N -0.248 5.248
29 C 0.030 3.970
30 H 0.089 0.911
31 H 0.085 0.915
32 H 0.089 0.911
33 H 0.130 0.870
34 H 0.102 0.898
35 H 0.186 0.814
36 H 0.189 0.811
37 H 0.169 0.831
38 H 0.131 0.869
39 H 0.096 0.904
40 H 0.132 0.868
41 H 0.151 0.849
42 H 0.226 0.774
43 H 0.237 0.763
Dipole moment (debyes) X Y Z Total
from point charges -10.194 -20.499 -7.366 24.050
hybrid contribution 0.185 1.364 0.883 1.636
sum -10.010 -19.135 -6.483 22.547
Atomic orbital electron populations
1.21584 0.90179 1.03238 1.03079 1.20368 0.99260 0.98277 0.90428
0.91975 1.21788 0.79520 1.02156 0.96881 1.47998 1.06540 1.47595
1.32408 1.18412 0.86361 0.77488 0.81145 1.90741 1.81804 1.40304
1.32578 1.19099 0.91557 0.93867 1.18311 1.21361 0.96956 0.93164
0.93989 1.21260 0.92391 0.99964 1.05828 1.21443 1.01257 0.90617
0.93213 1.21310 0.94023 0.99839 1.11062 1.19636 0.92992 0.84390
0.92621 1.83593 1.39684 1.12355 1.78303 1.20801 0.92058 0.84403
1.50057 0.88890 1.25008 1.02648 0.93970 0.95892 1.69671 1.36503
0.99942 1.48915 0.85459 0.79984 0.77645 0.79048 1.19738 1.18550
1.20571 1.20834 0.99904 0.94830 0.81610 1.21526 0.98763 1.01273
0.99387 1.23751 0.96999 0.93970 0.85650 1.68543 1.08297 1.16560
1.31203 1.25472 0.90610 0.87869 0.96480 1.68380 1.32261 1.24682
0.99500 1.21233 0.90355 0.91449 0.93929 0.91067 0.91455 0.91050
0.86960 0.89811 0.81398 0.81077 0.83145 0.86881 0.90424 0.86802
0.84931 0.77418 0.76313
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.48 8.82 71.98 0.63 -1.85 16
2 C -0.06 -1.66 3.08 -11.68 -0.04 -1.69 16
3 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
4 C 0.12 3.02 5.74 86.20 0.49 3.52 16
5 N -0.61 -17.49 2.94 -828.61 -2.44 -19.93 16
6 C 0.58 22.53 6.96 86.69 0.60 23.14 16
7 O -0.58 -28.31 16.07 3.54 0.06 -28.26 16
8 C -0.22 -8.37 4.96 -19.99 -0.10 -8.47 16
9 C -0.04 -0.89 7.50 22.52 0.17 -0.72 16
10 C -0.18 -3.80 10.02 22.25 0.22 -3.58 16
11 C -0.05 -1.33 10.03 22.30 0.22 -1.11 16
12 C -0.24 -9.92 9.16 22.36 0.20 -9.72 16
13 C 0.16 7.26 6.64 22.91 0.15 7.41 16
14 O -0.23 -13.37 7.67 -12.44 -0.10 -13.46 16
15 C -0.40 -23.92 9.95 67.93 0.68 -23.24 16
16 H 0.09 5.67 5.44 -2.91 -0.02 5.65 16
17 C 0.02 1.50 5.49 84.85 0.47 1.97 16
18 N -0.91 -55.21 13.96 21.62 0.30 -54.91 16
19 Si 0.95 50.13 28.62 68.60 1.96 52.09 16
20 H -0.27 -14.15 7.11 99.48 0.71 -13.44 16
21 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16
22 H -0.28 -15.57 7.11 99.48 0.71 -14.87 16
23 C 0.15 2.86 4.92 85.40 0.42 3.28 16
24 C -0.20 -4.35 5.81 -19.98 -0.12 -4.46 16
25 C 0.16 2.93 10.94 84.80 0.93 3.86 16
26 N -0.53 -11.20 10.45 -199.99 -2.09 -13.29 16
27 C 0.28 6.00 12.28 180.94 2.22 8.22 16
28 N -0.53 -13.40 9.33 -188.72 -1.76 -15.16 16
29 C 0.17 4.43 6.24 42.19 0.26 4.69 16
30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.07 1.46 7.64 -2.39 -0.02 1.44 16
32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.11 1.99 8.09 -2.39 -0.02 1.98 16
34 H 0.08 2.52 7.06 -2.39 -0.02 2.51 16
35 H 0.17 2.50 7.10 -2.91 -0.02 2.48 16
36 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16
37 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16
38 H 0.11 5.13 5.64 -2.91 -0.02 5.11 16
39 H 0.29 15.98 8.31 -92.71 -0.77 15.21 16
40 H 0.11 2.17 5.17 -2.39 -0.01 2.16 16
41 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16
42 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16
43 H 0.22 3.14 8.06 -2.91 -0.02 3.11 16
Total: -1.00 -83.61 358.16 4.43 -79.18
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: 1.06 Total: 12.49 kcal
Atomic # 6 Polarization: -6.19 SS G_CDS: 7.43 Total: 1.24 kcal
Atomic # 7 Polarization: -97.30 SS G_CDS: -5.99 Total: -103.28 kcal
Atomic # 8 Polarization: -41.68 SS G_CDS: -0.04 Total: -41.72 kcal
Atomic # 14 Polarization: 50.13 SS G_CDS: 1.96 Total: 52.09 kcal
Total: -83.61 4.43 -79.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001412512399.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.195 kcal
(2) G-P(sol) polarization free energy of solvation -83.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds