Wall clock time and date at job start Wed Apr 1 2020 00:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35959 * 116.99915 * 2 1 4 4 C 1.37571 * 120.82733 * 179.97438 * 3 2 1 5 5 C 1.38042 * 114.25299 * 180.02562 * 4 3 2 6 6 C 1.47111 * 127.75858 * 180.02562 * 5 4 3 7 7 O 1.21628 * 120.00355 * 329.14420 * 6 5 4 8 8 N 1.34780 * 119.99773 * 149.14674 * 6 5 4 9 9 C 1.46928 * 120.63022 * 3.90333 * 8 6 5 10 10 C 1.52767 * 109.00613 * 233.58247 * 9 8 6 11 11 C 1.53040 * 109.38203 * 305.58773 * 10 9 8 12 12 C 1.53043 * 109.54092 * 61.24001 * 11 10 9 13 13 H 1.08999 * 109.49632 * 58.58525 * 12 11 10 14 14 C 1.52999 * 109.52512 * 178.66787 * 12 11 10 15 15 C 1.46924 * 120.63006 * 184.17819 * 8 6 5 16 16 H 1.08999 * 109.58718 * 246.15783 * 15 8 6 17 17 C 1.53004 * 109.58928 * 6.58496 * 15 8 6 18 18 N 1.46502 * 109.46624 * 285.04442 * 17 15 8 19 19 C 1.36942 * 119.99804 * 185.64561 * 18 17 15 20 20 H 1.08001 * 119.99659 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00101 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99937 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47222 * 89.99928 * 23 21 19 25 25 H 1.48504 * 109.47040 * 209.99960 * 23 21 19 26 26 H 1.48501 * 109.47423 * 330.00264 * 23 21 19 27 27 S 1.77233 * 104.47761 * 0.02562 * 5 4 3 28 28 N 1.30366 * 120.82729 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46802 * 60.00571 * 1 2 3 30 30 H 1.09000 * 109.46704 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47427 * 300.00504 * 1 2 3 32 32 H 1.08008 * 122.87147 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.58781 * 353.41621 * 9 8 6 34 34 H 1.09002 * 109.58783 * 113.84416 * 9 8 6 35 35 H 1.08997 * 109.56514 * 185.55267 * 10 9 8 36 36 H 1.09001 * 109.35653 * 65.49439 * 10 9 8 37 37 H 1.08996 * 109.46301 * 301.22039 * 11 10 9 38 38 H 1.09003 * 109.46043 * 181.25925 * 11 10 9 39 39 H 1.09001 * 109.46983 * 179.85715 * 14 12 11 40 40 H 1.08999 * 109.47044 * 299.84989 * 14 12 11 41 41 H 1.08997 * 109.47081 * 59.85310 * 14 12 11 42 42 H 1.09000 * 109.46852 * 45.03654 * 17 15 8 43 43 H 1.08990 * 109.47220 * 165.04399 * 17 15 8 44 44 H 0.96993 * 120.00444 * 5.63654 * 18 17 15 45 45 H 0.97000 * 120.00313 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3033 0.0005 5 6 3.9006 2.5969 0.0010 6 6 5.3049 3.0352 0.0011 7 8 6.1549 2.3530 0.5410 8 7 5.6496 4.1928 -0.5970 9 6 4.6238 5.0693 -1.1787 10 6 4.9874 5.3638 -2.6329 11 6 6.4079 5.9296 -2.6967 12 6 7.3955 4.8963 -2.1498 13 1 7.3222 3.9786 -2.7334 14 6 8.8189 5.4494 -2.2445 15 6 7.0587 4.5992 -0.6852 16 1 7.2191 5.4945 -0.0845 17 6 7.9521 3.4676 -0.1729 18 7 7.8783 3.4111 1.2891 19 6 8.6854 2.5492 1.9826 20 1 9.3760 1.9108 1.4516 21 6 8.6160 2.4960 3.3680 22 7 7.7740 3.2736 4.0150 23 14 9.7164 1.3197 4.3138 24 1 10.9927 1.9995 4.6519 25 1 9.0333 0.8994 5.5636 26 1 9.9983 0.1251 3.4779 27 16 2.4471 3.6110 0.0015 28 7 1.3521 2.3149 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.0644 0.4373 0.0006 33 1 3.6541 4.5731 -1.1392 34 1 4.5815 6.0037 -0.6191 35 1 4.2873 6.0910 -3.0441 36 1 4.9368 4.4416 -3.2118 37 1 6.4641 6.8383 -2.0974 38 1 6.6604 6.1611 -3.7315 39 1 9.5213 4.7138 -1.8525 40 1 9.0581 5.6605 -3.2868 41 1 8.8914 6.3677 -1.6618 42 1 7.6130 2.5196 -0.5907 43 1 8.9821 3.6514 -0.4780 44 1 7.2579 3.9843 1.7660 45 1 7.7257 3.2368 4.9831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568424495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:38 Heat of formation + Delta-G solvation = 32.570793 kcal Electronic energy + Delta-G solvation = -28490.940400 eV Core-core repulsion = 24638.195861 eV Total energy + Delta-G solvation = -3852.744539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.43034 -39.96162 -37.47510 -36.27447 -34.79040 -33.56987 -32.22618 -31.10485 -30.26246 -28.17493 -27.20310 -26.13085 -24.86185 -23.68184 -22.51738 -21.67508 -20.83408 -19.99127 -18.95581 -18.17853 -17.58187 -16.87508 -16.28063 -16.14139 -15.62674 -15.11047 -14.80350 -14.76718 -14.69692 -14.08588 -13.88961 -13.53825 -13.40547 -13.33244 -12.91685 -12.80151 -12.63512 -12.38799 -12.11308 -12.03244 -11.78474 -11.63901 -11.30115 -11.17638 -11.00605 -10.99225 -10.84762 -10.72923 -10.63272 -10.35717 -10.18364 -9.87052 -9.58897 -9.54155 -8.82643 -8.64913 -8.24224 -8.16772 -6.62142 -5.63859 -2.78508 0.34313 1.24955 1.62912 2.39560 2.89215 3.36770 3.45460 3.53784 3.56821 3.58750 4.53529 4.67225 4.70293 4.83635 4.84389 4.95938 5.01498 5.05652 5.11767 5.27090 5.36728 5.38954 5.47407 5.53341 5.66505 5.70443 5.72026 5.74436 5.78165 5.86232 5.88239 5.94169 6.07401 6.12688 6.17164 6.26873 6.38584 6.51991 6.56841 6.84700 7.04709 7.16852 7.69225 7.80608 8.53997 8.62986 9.65482 10.24877 10.59028 11.59274 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008453 B = 0.004942 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.453959 B = 5664.458352 C = 8302.691951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.298 6.298 3 C 0.312 3.688 4 C -0.153 4.153 5 C -0.150 4.150 6 C 0.541 3.459 7 O -0.416 6.416 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.131 4.131 11 C -0.113 4.113 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.146 4.146 15 C 0.150 3.850 16 H 0.075 0.925 17 C 0.154 3.846 18 N -0.690 5.690 19 C -0.207 4.207 20 H 0.068 0.932 21 C -0.020 4.020 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.283 1.283 27 S 0.269 5.731 28 N -0.541 5.541 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.173 0.827 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.027 0.973 44 H 0.381 0.619 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 3.998 -15.905 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.204 6.204 3 C 0.098 3.902 4 C -0.189 4.189 5 C -0.282 4.282 6 C 0.324 3.676 7 O -0.284 6.284 8 N -0.343 5.343 9 C -0.027 4.027 10 C -0.170 4.170 11 C -0.151 4.151 12 C -0.119 4.119 13 H 0.092 0.908 14 C -0.204 4.204 15 C 0.048 3.952 16 H 0.093 0.907 17 C 0.026 3.974 18 N -0.332 5.332 19 C -0.340 4.340 20 H 0.086 0.914 21 C -0.215 4.215 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.209 1.209 27 S 0.418 5.582 28 N -0.381 5.381 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.214 0.786 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.308 4.726 -15.501 20.349 hybrid contribution 0.771 -1.818 0.832 2.143 sum -11.537 2.907 -14.668 18.887 Atomic orbital electron populations 1.22917 0.77142 1.03256 1.02376 1.86300 1.22671 1.23126 1.88321 1.19874 0.89750 0.85091 0.95454 1.20649 0.92268 0.98575 1.07393 1.26391 0.99446 0.97113 1.05224 1.16851 0.84980 0.83562 0.82223 1.91324 1.46222 1.52501 1.38330 1.47660 1.07319 1.20612 1.58740 1.21999 0.91149 0.95043 0.94481 1.21819 0.97516 1.01640 0.96022 1.21588 0.93971 0.98415 1.01116 1.21485 0.95375 0.99019 0.96061 0.90769 1.21850 0.95643 1.01634 1.01281 1.21597 0.79207 0.99321 0.95099 0.90726 1.21046 0.94489 0.94636 0.87191 1.42319 1.45350 1.46215 0.99344 1.19221 1.12292 1.13462 0.88988 0.91418 1.24658 1.00075 1.00375 0.96435 1.69656 1.39342 1.41962 1.07033 0.86210 0.79822 0.80755 0.79621 1.22006 1.21979 1.20906 1.84868 0.90437 1.12450 1.70403 1.76336 1.27963 1.01710 1.32080 0.92347 0.88291 0.92261 0.80988 0.90363 0.90825 0.90696 0.91482 0.91617 0.91708 0.91475 0.92805 0.92469 0.94293 0.95513 0.78552 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.43 101.05 1.05 1.44 16 2 O -0.30 -4.11 10.51 -19.61 -0.21 -4.32 16 3 C 0.31 4.73 7.36 -18.42 -0.14 4.60 16 4 C -0.15 -2.45 10.21 -39.90 -0.41 -2.85 16 5 C -0.15 -2.46 6.15 -36.06 -0.22 -2.68 16 6 C 0.54 10.10 7.33 -12.66 -0.09 10.01 16 7 O -0.42 -9.75 10.94 5.25 0.06 -9.70 16 8 N -0.61 -9.43 2.98 -166.85 -0.50 -9.93 16 9 C 0.10 1.16 5.96 -3.93 -0.02 1.13 16 10 C -0.13 -1.23 6.07 -26.83 -0.16 -1.40 16 11 C -0.11 -1.09 5.17 -26.69 -0.14 -1.22 16 12 C -0.10 -1.20 2.34 -90.50 -0.21 -1.41 16 13 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.15 -1.64 8.99 37.16 0.33 -1.31 16 15 C 0.15 2.40 2.37 -67.60 -0.16 2.24 16 16 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.15 3.15 4.86 -4.04 -0.02 3.13 16 18 N -0.69 -17.83 3.28 -59.91 -0.20 -18.02 16 19 C -0.21 -5.96 9.80 -15.06 -0.15 -6.11 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 22 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 23 Si 0.90 23.28 29.55 -169.99 -5.02 18.26 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 27 S 0.27 3.71 20.14 -107.50 -2.16 1.54 16 28 N -0.54 -8.07 11.03 29.19 0.32 -7.75 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.17 2.69 8.06 -52.48 -0.42 2.27 16 33 H 0.08 0.90 3.18 -21.56 -0.07 0.83 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.87 6.18 -51.93 -0.32 0.55 16 43 H 0.03 0.54 6.09 -51.93 -0.32 0.22 16 44 H 0.38 10.55 7.37 -40.82 -0.30 10.25 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -33.84 366.37 -8.27 -42.11 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.38 Total: 5.70 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.43 Total: 4.86 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.35 Total: -63.98 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.15 Total: -14.01 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -2.16 Total: 1.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.84 -8.27 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568424495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.679 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds