Wall clock time and date at job start Wed Apr 1 2020 00:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 117.00202 * 2 1 4 4 C 1.37571 * 120.83009 * 180.26515 * 3 2 1 5 5 C 1.38034 * 114.25201 * 180.23801 * 4 3 2 6 6 C 1.47111 * 127.76248 * 179.80147 * 5 4 3 7 7 O 1.21630 * 119.99914 * 10.88522 * 6 5 4 8 8 N 1.34775 * 120.00490 * 190.87995 * 6 5 4 9 9 C 1.46925 * 120.62673 * 8.63324 * 8 6 5 10 10 C 1.53192 * 108.77777 * 126.37085 * 9 8 6 11 11 C 1.53042 * 109.31141 * 54.62927 * 10 9 8 12 12 C 1.53039 * 109.54211 * 298.63725 * 11 10 9 13 13 H 1.08998 * 109.49471 * 301.41771 * 12 11 10 14 14 C 1.52994 * 109.49899 * 181.31493 * 12 11 10 15 15 C 1.46923 * 120.63394 * 188.60933 * 8 6 5 16 16 H 1.09004 * 109.58842 * 113.84384 * 15 8 6 17 17 C 1.53001 * 109.70199 * 353.48926 * 15 8 6 18 18 N 1.46503 * 109.47336 * 67.63126 * 17 15 8 19 19 C 1.36930 * 120.00147 * 175.67951 * 18 17 15 20 20 H 1.07999 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99948 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99894 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46890 * 90.00149 * 23 21 19 25 25 H 1.48498 * 109.47389 * 209.99998 * 23 21 19 26 26 H 1.48500 * 109.47061 * 329.99968 * 23 21 19 27 27 S 1.77237 * 104.47964 * 359.54705 * 5 4 3 28 28 N 1.30365 * 120.82245 * 359.97377 * 3 2 1 29 29 H 1.09000 * 109.46741 * 60.00113 * 1 2 3 30 30 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47300 * 300.00451 * 1 2 3 32 32 H 1.08002 * 122.86900 * 0.08669 * 4 3 2 33 33 H 1.08995 * 109.59009 * 6.57865 * 9 8 6 34 34 H 1.09004 * 109.58307 * 246.15492 * 9 8 6 35 35 H 1.08996 * 109.49802 * 174.58637 * 10 9 8 36 36 H 1.09003 * 109.49444 * 294.68193 * 10 9 8 37 37 H 1.09004 * 109.45752 * 58.66114 * 11 10 9 38 38 H 1.09001 * 109.45986 * 178.61727 * 11 10 9 39 39 H 1.09003 * 109.46879 * 60.00354 * 14 12 11 40 40 H 1.08999 * 109.47410 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47195 * 300.00143 * 14 12 11 42 42 H 1.09000 * 109.46954 * 187.63254 * 17 15 8 43 43 H 1.08995 * 109.47309 * 307.62849 * 17 15 8 44 44 H 0.96998 * 119.99911 * 355.67727 * 18 17 15 45 45 H 0.96999 * 119.99806 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3033 -0.0055 5 6 3.9007 2.5968 0.0005 6 6 5.3049 3.0352 0.0011 7 8 6.1935 2.2301 -0.2029 8 7 5.6070 4.3290 0.2276 9 6 4.5696 5.2752 0.6602 10 6 5.0417 5.9738 1.9392 11 6 6.4106 6.6117 1.6916 12 6 7.4252 5.5236 1.3329 13 1 7.4819 4.7975 2.1439 14 6 8.8004 6.1585 1.1177 15 6 6.9799 4.8200 0.0470 16 1 7.0097 5.5246 -0.7842 17 6 7.9142 3.6438 -0.2440 18 7 7.5913 3.0764 -1.5555 19 6 8.3566 2.0647 -2.0711 20 1 9.1981 1.6848 -1.5108 21 6 8.0502 1.5268 -3.3135 22 7 8.7856 0.5540 -3.8090 23 14 6.5935 2.1824 -4.2818 24 1 7.0401 3.2995 -5.1522 25 1 6.0281 1.0961 -5.1217 26 1 5.5542 2.6727 -3.3411 27 16 2.4471 3.6110 -0.0003 28 7 1.3521 2.3149 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0643 0.4373 -0.0113 33 1 3.6433 4.7362 0.8589 34 1 4.4028 6.0169 -0.1210 35 1 4.3251 6.7465 2.2175 36 1 5.1210 5.2434 2.7445 37 1 6.3360 7.3239 0.8698 38 1 6.7379 7.1304 2.5928 39 1 9.1155 6.6614 2.0320 40 1 9.5226 5.3832 0.8618 41 1 8.7429 6.8833 0.3056 42 1 8.9473 3.9915 -0.2429 43 1 7.7872 2.8803 0.5235 44 1 6.8352 3.4173 -2.0586 45 1 8.5717 0.1783 -4.6773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568424498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:46 Heat of formation + Delta-G solvation = 38.022059 kcal Electronic energy + Delta-G solvation = -28778.433393 eV Core-core repulsion = 24925.925238 eV Total energy + Delta-G solvation = -3852.508154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.54128 -39.97344 -37.56351 -36.26958 -35.00824 -33.70905 -32.31864 -31.11478 -30.69172 -28.22579 -27.43639 -26.30236 -24.98106 -23.68681 -22.33279 -21.74121 -20.92039 -20.08693 -19.00565 -18.34132 -17.67546 -17.23647 -16.23769 -16.20388 -15.69424 -15.25485 -14.93802 -14.78344 -14.70252 -14.15412 -14.09142 -13.75846 -13.36070 -13.32777 -13.09223 -12.82160 -12.69872 -12.58633 -12.27045 -12.07842 -11.84928 -11.75989 -11.46874 -11.31438 -11.16956 -11.08936 -10.95561 -10.85599 -10.71543 -10.29090 -10.23543 -10.00646 -9.56746 -9.53536 -8.98065 -8.70775 -8.38010 -8.25951 -6.98335 -5.75174 -2.92663 0.26244 1.26970 1.63292 2.38537 2.84781 3.32813 3.36537 3.42009 3.46472 3.48660 4.46560 4.62258 4.62765 4.70444 4.77182 4.84793 4.97969 5.06123 5.12703 5.16998 5.28488 5.36858 5.41077 5.47798 5.53786 5.58525 5.59899 5.61694 5.70791 5.72658 5.79637 5.88702 5.94397 6.01097 6.10045 6.19260 6.22892 6.37333 6.42712 6.72134 7.04250 7.07274 7.58405 8.01889 8.42782 8.51554 9.22684 9.95379 10.14184 11.43032 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008385 B = 0.005945 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.609658 B = 4708.399323 C = 7317.964329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.312 3.688 4 C -0.149 4.149 5 C -0.159 4.159 6 C 0.534 3.466 7 O -0.420 6.420 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.147 4.147 15 C 0.147 3.853 16 H 0.073 0.927 17 C 0.157 3.843 18 N -0.709 5.709 19 C -0.206 4.206 20 H 0.091 0.909 21 C 0.000 4.000 22 N -0.927 5.927 23 Si 0.881 3.119 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 S 0.259 5.741 28 N -0.548 5.548 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.175 0.825 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.357 0.643 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 11.725 13.147 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.099 3.901 4 C -0.186 4.186 5 C -0.291 4.291 6 C 0.318 3.682 7 O -0.288 6.288 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.169 4.169 11 C -0.151 4.151 12 C -0.119 4.119 13 H 0.095 0.905 14 C -0.205 4.205 15 C 0.044 3.956 16 H 0.091 0.909 17 C 0.030 3.970 18 N -0.353 5.353 19 C -0.338 4.338 20 H 0.109 0.891 21 C -0.196 4.196 22 N -0.576 5.576 23 Si 0.712 3.288 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.206 1.206 27 S 0.408 5.592 28 N -0.387 5.387 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.190 0.810 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.472 12.313 12.966 22.388 hybrid contribution -0.666 -1.020 -0.887 1.507 sum -14.137 11.293 12.079 21.755 Atomic orbital electron populations 1.22909 0.77190 1.03251 1.02298 1.86310 1.22631 1.23197 1.88273 1.19883 0.89744 0.85101 0.95376 1.20703 0.92322 0.98822 1.06715 1.26246 0.99014 0.97053 1.06740 1.16741 0.85273 0.83341 0.82830 1.91225 1.44063 1.51780 1.41725 1.47608 1.09637 1.07691 1.70152 1.22016 0.90190 0.92824 0.97178 1.21886 0.97644 1.00091 0.97252 1.21588 0.94189 0.97581 1.01717 1.21480 0.95255 0.97340 0.97828 0.90455 1.21851 0.96042 1.01114 1.01480 1.21634 0.80243 0.97093 0.96607 0.90918 1.21073 0.94246 0.91916 0.89774 1.42846 1.33677 1.41777 1.16966 1.19100 1.06801 1.08340 0.99514 0.89072 1.24614 0.98679 0.98457 0.97803 1.69695 1.40750 1.27941 1.19193 0.86570 0.83774 0.78269 0.80183 1.21271 1.21704 1.20552 1.84813 0.90543 1.12198 1.71653 1.76324 1.28518 1.01979 1.31845 0.92344 0.88276 0.92368 0.80743 0.90494 0.90819 0.90598 0.91247 0.91660 0.91529 0.92643 0.91419 0.92529 0.94676 0.92828 0.80987 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.43 101.05 1.05 1.47 16 2 O -0.30 -4.34 10.51 -19.63 -0.21 -4.55 16 3 C 0.31 4.95 7.36 -18.42 -0.14 4.82 16 4 C -0.15 -2.52 10.11 -39.90 -0.40 -2.92 16 5 C -0.16 -2.65 6.40 -36.06 -0.23 -2.88 16 6 C 0.53 9.78 6.93 -12.66 -0.09 9.69 16 7 O -0.42 -9.45 10.81 5.25 0.06 -9.39 16 8 N -0.61 -9.15 2.97 -166.60 -0.50 -9.65 16 9 C 0.10 1.15 5.69 -3.71 -0.02 1.13 16 10 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 11 C -0.11 -0.99 5.17 -26.69 -0.14 -1.13 16 12 C -0.10 -1.11 2.34 -90.50 -0.21 -1.33 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.15 -1.51 8.97 37.15 0.33 -1.18 16 15 C 0.15 2.18 2.40 -67.60 -0.16 2.02 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.16 3.04 4.77 -4.04 -0.02 3.02 16 18 N -0.71 -17.14 3.03 -59.91 -0.18 -17.32 16 19 C -0.21 -5.93 10.16 -15.06 -0.15 -6.08 16 20 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 21 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 22 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 23 Si 0.88 23.15 27.73 -169.99 -4.71 18.43 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 26 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 27 S 0.26 3.55 19.64 -107.50 -2.11 1.43 16 28 N -0.55 -8.37 11.03 29.19 0.32 -8.05 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.18 2.98 8.06 -52.49 -0.42 2.55 16 33 H 0.08 0.86 3.17 -19.53 -0.06 0.80 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.78 6.46 -51.93 -0.34 0.45 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.67 6.31 -51.93 -0.33 0.34 16 43 H 0.05 1.14 6.36 -51.93 -0.33 0.81 16 44 H 0.36 8.69 4.84 -40.82 -0.20 8.49 16 45 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -34.15 361.97 -7.87 -42.02 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.34 Total: 5.19 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.43 Total: 5.24 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.42 Total: -63.83 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.15 Total: -13.94 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.43 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.11 Total: 1.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.15 -7.87 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568424498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.040 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds