Wall clock time and date at job start Wed Apr 1 2020 00:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 117.00202 * 2 1 4 4 C 1.37571 * 120.83009 * 180.26515 * 3 2 1 5 5 C 1.38034 * 114.25201 * 180.23801 * 4 3 2 6 6 C 1.47111 * 127.76248 * 179.80147 * 5 4 3 7 7 O 1.21630 * 119.99914 * 10.88522 * 6 5 4 8 8 N 1.34775 * 120.00490 * 190.87995 * 6 5 4 9 9 C 1.46925 * 120.62673 * 8.63324 * 8 6 5 10 10 C 1.53192 * 108.77777 * 126.37085 * 9 8 6 11 11 C 1.53042 * 109.31141 * 54.62927 * 10 9 8 12 12 C 1.53039 * 109.54211 * 298.63725 * 11 10 9 13 13 H 1.08998 * 109.49471 * 301.41771 * 12 11 10 14 14 C 1.52994 * 109.49899 * 181.31493 * 12 11 10 15 15 C 1.46923 * 120.63394 * 188.60933 * 8 6 5 16 16 H 1.09004 * 109.58842 * 113.84384 * 15 8 6 17 17 C 1.53001 * 109.70199 * 353.48926 * 15 8 6 18 18 N 1.46503 * 109.47336 * 67.63126 * 17 15 8 19 19 C 1.36930 * 120.00147 * 175.67951 * 18 17 15 20 20 H 1.07999 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99948 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99894 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46890 * 90.00149 * 23 21 19 25 25 H 1.48498 * 109.47389 * 209.99998 * 23 21 19 26 26 H 1.48500 * 109.47061 * 329.99968 * 23 21 19 27 27 S 1.77237 * 104.47964 * 359.54705 * 5 4 3 28 28 N 1.30365 * 120.82245 * 359.97377 * 3 2 1 29 29 H 1.09000 * 109.46741 * 60.00113 * 1 2 3 30 30 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47300 * 300.00451 * 1 2 3 32 32 H 1.08002 * 122.86900 * 0.08669 * 4 3 2 33 33 H 1.08995 * 109.59009 * 6.57865 * 9 8 6 34 34 H 1.09004 * 109.58307 * 246.15492 * 9 8 6 35 35 H 1.08996 * 109.49802 * 174.58637 * 10 9 8 36 36 H 1.09003 * 109.49444 * 294.68193 * 10 9 8 37 37 H 1.09004 * 109.45752 * 58.66114 * 11 10 9 38 38 H 1.09001 * 109.45986 * 178.61727 * 11 10 9 39 39 H 1.09003 * 109.46879 * 60.00354 * 14 12 11 40 40 H 1.08999 * 109.47410 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47195 * 300.00143 * 14 12 11 42 42 H 1.09000 * 109.46954 * 187.63254 * 17 15 8 43 43 H 1.08995 * 109.47309 * 307.62849 * 17 15 8 44 44 H 0.96998 * 119.99911 * 355.67727 * 18 17 15 45 45 H 0.96999 * 119.99806 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3033 -0.0055 5 6 3.9007 2.5968 0.0005 6 6 5.3049 3.0352 0.0011 7 8 6.1935 2.2301 -0.2029 8 7 5.6070 4.3290 0.2276 9 6 4.5696 5.2752 0.6602 10 6 5.0417 5.9738 1.9392 11 6 6.4106 6.6117 1.6916 12 6 7.4252 5.5236 1.3329 13 1 7.4819 4.7975 2.1439 14 6 8.8004 6.1585 1.1177 15 6 6.9799 4.8200 0.0470 16 1 7.0097 5.5246 -0.7842 17 6 7.9142 3.6438 -0.2440 18 7 7.5913 3.0764 -1.5555 19 6 8.3566 2.0647 -2.0711 20 1 9.1981 1.6848 -1.5108 21 6 8.0502 1.5268 -3.3135 22 7 8.7856 0.5540 -3.8090 23 14 6.5935 2.1824 -4.2818 24 1 7.0401 3.2995 -5.1522 25 1 6.0281 1.0961 -5.1217 26 1 5.5542 2.6727 -3.3411 27 16 2.4471 3.6110 -0.0003 28 7 1.3521 2.3149 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0643 0.4373 -0.0113 33 1 3.6433 4.7362 0.8589 34 1 4.4028 6.0169 -0.1210 35 1 4.3251 6.7465 2.2175 36 1 5.1210 5.2434 2.7445 37 1 6.3360 7.3239 0.8698 38 1 6.7379 7.1304 2.5928 39 1 9.1155 6.6614 2.0320 40 1 9.5226 5.3832 0.8618 41 1 8.7429 6.8833 0.3056 42 1 8.9473 3.9915 -0.2429 43 1 7.7872 2.8803 0.5235 44 1 6.8352 3.4173 -2.0586 45 1 8.5717 0.1783 -4.6773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568424498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:45 Heat of formation + Delta-G solvation = 12.037667 kcal Electronic energy + Delta-G solvation = -28779.560161 eV Core-core repulsion = 24925.925238 eV Total energy + Delta-G solvation = -3853.634922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84268 -41.14787 -38.75973 -37.50747 -36.61714 -35.00575 -33.84496 -32.41415 -32.30630 -29.35715 -28.62318 -27.28799 -26.41501 -25.05117 -23.81483 -22.88250 -22.24725 -21.09787 -20.29129 -19.94901 -19.08860 -18.63852 -17.45109 -17.34175 -16.95940 -16.72600 -16.26362 -15.93674 -15.91935 -15.76639 -15.38556 -14.98197 -14.78556 -14.55141 -14.36385 -14.13304 -13.98977 -13.85301 -13.54202 -13.16785 -13.03180 -12.92970 -12.86192 -12.71106 -12.51466 -12.23444 -12.15700 -12.04704 -11.92534 -11.81635 -11.63241 -11.33289 -11.13340 -11.01718 -10.81234 -10.28055 -9.69987 -9.40608 -8.95069 -7.97200 -5.20066 -1.01145 -0.01082 0.41331 1.08758 1.27251 1.33200 1.38572 1.62550 2.02660 2.22282 2.48720 3.27406 3.35495 3.58022 3.62142 3.78437 3.85759 4.02189 4.09915 4.17012 4.20918 4.27133 4.29393 4.31459 4.47134 4.51579 4.52741 4.65789 4.77234 4.81070 4.85667 4.96703 4.99392 4.99796 5.13066 5.25160 5.27127 5.31670 5.45264 5.53034 5.68290 5.80071 5.94912 6.25723 6.28251 7.10654 7.15200 7.92008 8.09364 9.26154 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008385 B = 0.005945 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.609658 B = 4708.399323 C = 7317.964329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.312 6.312 3 C 0.306 3.694 4 C -0.152 4.152 5 C -0.186 4.186 6 C 0.545 3.455 7 O -0.478 6.478 8 N -0.605 5.605 9 C 0.096 3.904 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.092 4.092 13 H 0.066 0.934 14 C -0.145 4.145 15 C 0.151 3.849 16 H 0.083 0.917 17 C 0.160 3.840 18 N -0.723 5.723 19 C -0.193 4.193 20 H 0.051 0.949 21 C -0.070 4.070 22 N -0.990 5.990 23 Si 0.948 3.052 24 H -0.273 1.273 25 H -0.301 1.301 26 H -0.270 1.270 27 S 0.351 5.649 28 N -0.551 5.551 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.356 0.644 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.778 15.806 14.984 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.093 3.907 4 C -0.190 4.190 5 C -0.318 4.318 6 C 0.329 3.671 7 O -0.350 6.350 8 N -0.342 5.342 9 C -0.029 4.029 10 C -0.163 4.163 11 C -0.145 4.145 12 C -0.112 4.112 13 H 0.084 0.916 14 C -0.203 4.203 15 C 0.049 3.951 16 H 0.101 0.899 17 C 0.034 3.966 18 N -0.367 5.367 19 C -0.325 4.325 20 H 0.069 0.931 21 C -0.260 4.260 22 N -0.644 5.644 23 Si 0.777 3.223 24 H -0.199 1.199 25 H -0.228 1.228 26 H -0.195 1.195 27 S 0.502 5.498 28 N -0.391 5.391 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.189 0.811 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.548 16.493 14.871 28.304 hybrid contribution 0.194 -2.180 -1.089 2.444 sum -17.354 14.313 13.782 26.381 Atomic orbital electron populations 1.23222 0.74982 1.05426 1.02566 1.86308 1.24833 1.22653 1.88021 1.19727 0.89314 0.85748 0.95922 1.20827 0.93135 0.98908 1.06103 1.26282 0.99948 0.98366 1.07169 1.17195 0.85535 0.83983 0.80419 1.91255 1.45611 1.53525 1.44642 1.47853 1.10785 1.07273 1.68250 1.22417 0.88655 0.92368 0.99473 1.21914 0.98464 1.00621 0.95338 1.21593 0.93012 0.96586 1.03313 1.21451 0.96785 0.97861 0.95127 0.91567 1.21835 0.94877 1.00635 1.02932 1.21640 0.79270 0.95113 0.99125 0.89886 1.21050 0.95620 0.92757 0.87164 1.42615 1.33697 1.41608 1.18772 1.18941 1.05883 1.08802 0.98884 0.93127 1.25282 1.01857 0.99551 0.99292 1.69875 1.43566 1.31076 1.19843 0.85490 0.80658 0.77487 0.78632 1.19895 1.22775 1.19529 1.84521 0.86952 1.09546 1.68750 1.76229 1.29546 1.02618 1.30720 0.92353 0.85335 0.91664 0.82053 0.90731 0.88209 0.87020 0.91895 0.90270 0.89206 0.90359 0.93727 0.91679 0.94837 0.95464 0.81122 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.43 113.37 1.18 1.78 16 2 O -0.31 -8.59 10.51 -93.17 -0.98 -9.57 16 3 C 0.31 9.14 7.36 84.75 0.62 9.76 16 4 C -0.15 -5.05 10.11 22.06 0.22 -4.83 16 5 C -0.19 -5.91 6.40 24.55 0.16 -5.75 16 6 C 0.54 19.68 6.93 86.57 0.60 20.28 16 7 O -0.48 -22.43 10.81 -4.13 -0.04 -22.47 16 8 N -0.61 -16.79 2.97 -799.24 -2.38 -19.16 16 9 C 0.10 1.67 5.69 86.36 0.49 2.16 16 10 C -0.13 -1.51 6.08 30.67 0.19 -1.32 16 11 C -0.11 -1.34 5.17 30.62 0.16 -1.18 16 12 C -0.09 -1.85 2.34 -10.72 -0.03 -1.87 16 13 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 14 C -0.15 -2.68 8.97 71.98 0.65 -2.03 16 15 C 0.15 4.28 2.40 44.98 0.11 4.39 16 16 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 17 C 0.16 6.47 4.77 86.38 0.41 6.88 16 18 N -0.72 -36.45 3.03 -343.45 -1.04 -37.48 16 19 C -0.19 -11.89 10.16 84.03 0.85 -11.04 16 20 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 21 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.99 -67.66 13.97 21.65 0.30 -67.36 16 23 Si 0.95 49.98 27.73 68.60 1.90 51.88 16 24 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 26 H -0.27 -13.44 6.52 99.48 0.65 -12.79 16 27 S 0.35 8.21 19.64 -56.49 -1.11 7.10 16 28 N -0.55 -15.04 11.03 -175.20 -1.93 -16.97 16 29 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 32 H 0.16 5.74 8.06 -2.91 -0.02 5.71 16 33 H 0.08 1.31 3.17 -22.99 -0.07 1.24 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.03 6.46 -2.39 -0.02 1.01 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.03 1.35 6.31 -2.39 -0.02 1.34 16 43 H 0.03 1.25 6.36 -2.39 -0.02 1.24 16 44 H 0.36 17.57 4.84 -92.71 -0.45 17.12 16 45 H 0.25 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -82.21 361.97 1.25 -80.95 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.44 Total: 19.83 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.08 Total: 13.26 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -5.04 Total: -140.98 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.02 Total: -32.04 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.90 Total: 51.88 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.11 Total: 7.10 kcal Total: -82.21 1.25 -80.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568424498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.991 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds