Wall clock time and date at job start Wed Apr 1 2020 00:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.49973 * 2 1 4 4 C 1.53196 * 109.49611 * 239.90105 * 2 1 3 5 5 N 1.46924 * 108.77539 * 185.41533 * 4 2 1 6 6 C 1.34771 * 120.63153 * 233.59154 * 5 4 2 7 7 O 1.21283 * 120.00264 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00077 * 179.97438 * 6 5 4 9 9 S 1.81009 * 109.47228 * 179.97438 * 8 6 5 10 10 C 1.76199 * 99.99880 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00434 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99673 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00141 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47346 * 90.00397 * 14 12 10 16 16 H 1.48503 * 109.47408 * 210.00323 * 14 12 10 17 17 H 1.48503 * 109.47193 * 330.00651 * 14 12 10 18 18 C 1.46930 * 118.73764 * 53.60781 * 5 4 2 19 19 C 1.53188 * 108.77436 * 306.39525 * 18 5 4 20 20 C 1.53038 * 109.49374 * 120.07017 * 2 1 3 21 21 H 1.08991 * 109.46712 * 61.30661 * 20 2 1 22 22 N 1.46899 * 109.45828 * 301.33012 * 20 2 1 23 23 C 1.46902 * 111.00140 * 155.00123 * 22 20 2 24 24 C 1.50701 * 109.47297 * 180.02562 * 23 22 20 25 25 C 1.41375 * 126.79787 * 95.00508 * 24 23 22 26 26 C 1.35455 * 103.98439 * 180.02562 * 25 24 23 27 27 O 1.34035 * 106.44342 * 0.02562 * 26 25 24 28 28 N 1.20923 * 111.57389 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46867 * 299.93521 * 1 2 3 30 30 H 1.08998 * 109.46945 * 59.93553 * 1 2 3 31 31 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.58982 * 305.20733 * 4 2 1 33 33 H 1.09003 * 109.58318 * 65.48994 * 4 2 1 34 34 H 1.09002 * 109.47344 * 299.99700 * 8 6 5 35 35 H 1.09004 * 109.47293 * 59.99828 * 8 6 5 36 36 H 0.97005 * 119.99565 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.58219 * 66.18135 * 18 5 4 38 38 H 1.08996 * 109.58423 * 186.46112 * 18 5 4 39 39 H 1.09002 * 109.50010 * 294.67927 * 19 18 5 40 40 H 1.09008 * 109.49419 * 174.58696 * 19 18 5 41 41 H 1.00898 * 111.00773 * 278.95720 * 22 20 2 42 42 H 1.09002 * 109.46669 * 60.00463 * 23 22 20 43 43 H 1.08996 * 109.46975 * 300.01024 * 23 22 20 44 44 H 1.08003 * 128.01339 * 0.03251 * 25 24 23 45 45 H 1.07999 * 126.78027 * 179.73618 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0414 -0.7242 -1.2494 5 7 3.5046 -0.8296 -1.1694 6 6 4.2811 -0.3871 -2.1781 7 8 3.7732 0.1033 -3.1643 8 6 5.7806 -0.5017 -2.0808 9 16 6.5360 0.1736 -3.5808 10 6 8.2390 -0.0804 -3.2067 11 1 8.5240 -0.5366 -2.2703 12 6 9.2142 0.3050 -4.1161 13 7 8.8668 0.8607 -5.2577 14 14 11.0196 0.0352 -3.7199 15 1 11.4403 -1.3009 -4.2129 16 1 11.8341 1.0859 -4.3816 17 1 11.2198 0.1059 -2.2501 18 6 4.1053 -1.4268 0.0312 19 6 3.5708 -0.6948 1.2661 20 6 2.0408 -0.7229 1.2485 21 1 1.6969 -1.7570 1.2356 22 7 1.5251 -0.0505 2.4485 23 6 1.4677 -0.9768 3.5873 24 6 0.9346 -0.2533 4.7970 25 6 -0.4073 -0.2200 5.2407 26 6 -0.3655 0.5531 6.3521 27 8 0.9135 0.9217 6.5100 28 7 1.6183 0.4656 5.6398 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6052 -1.7220 -1.2976 33 1 1.7617 -0.1598 -2.1390 34 1 6.1322 0.0570 -1.2134 35 1 6.0588 -1.5503 -1.9748 36 1 9.5484 1.1304 -5.8930 37 1 3.8375 -2.4819 0.0874 38 1 5.1897 -1.3270 -0.0146 39 1 3.9159 0.3391 1.2540 40 1 3.9334 -1.1892 2.1674 41 1 2.0773 0.7638 2.6723 42 1 2.4683 -1.3531 3.8002 43 1 0.8099 -1.8111 3.3441 44 1 -1.2668 -0.6999 4.7964 45 1 -1.1990 0.8235 6.9835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698887127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:54 Heat of formation + Delta-G solvation = 1.909060 kcal Electronic energy + Delta-G solvation = -26555.273259 eV Core-core repulsion = 22701.199128 eV Total energy + Delta-G solvation = -3854.074132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.83287 -41.33872 -39.33665 -36.88706 -35.10937 -34.60302 -33.95838 -32.56638 -31.72200 -30.97826 -27.81420 -27.74002 -26.92148 -24.68006 -23.99876 -23.34864 -21.93264 -21.44005 -20.48904 -19.54331 -18.68295 -18.48638 -18.15878 -17.08032 -16.89508 -16.77917 -16.35701 -16.10805 -15.98369 -15.83881 -15.46229 -14.91988 -14.57961 -14.52027 -14.35874 -14.14976 -13.65476 -13.56730 -13.40990 -13.36198 -13.17940 -12.98849 -12.90783 -12.82746 -12.65824 -12.38982 -12.25996 -11.98559 -11.76264 -11.72281 -11.44439 -11.16012 -11.10765 -10.89248 -10.51406 -10.29044 -9.74120 -9.39398 -8.69565 -8.36311 -6.14969 0.66753 1.23634 1.32309 1.41005 1.44097 1.54257 1.55445 2.08394 2.25571 2.51900 2.97637 3.05702 3.22704 3.38041 3.56687 3.66192 3.73140 3.89525 3.97379 4.05270 4.21542 4.26893 4.30563 4.37589 4.41723 4.45333 4.48930 4.58229 4.66296 4.71474 4.74570 4.77115 4.80728 4.92851 4.98107 5.09594 5.20090 5.22405 5.34642 5.39642 5.44401 5.61115 5.95106 6.17770 6.20676 6.27034 7.04643 7.12076 7.38865 8.72933 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.002102 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.491059 B =13315.199131 C =14493.552780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.050 0.950 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.532 3.468 7 O -0.567 6.567 8 C -0.123 4.123 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.259 1.259 18 C 0.105 3.895 19 C -0.159 4.159 20 C 0.104 3.896 21 H 0.102 0.898 22 N -0.673 5.673 23 C 0.140 3.860 24 C 0.007 3.993 25 C -0.229 4.229 26 C -0.051 4.051 27 O 0.081 5.919 28 N -0.401 5.401 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.338 0.662 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.194 0.806 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.668 -7.271 25.977 34.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.104 4.104 3 H 0.068 0.932 4 C -0.007 4.007 5 N -0.340 5.340 6 C 0.319 3.681 7 O -0.446 6.446 8 C -0.274 4.274 9 S 0.075 5.925 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.182 1.182 18 C -0.017 4.017 19 C -0.199 4.199 20 C -0.006 4.006 21 H 0.120 0.880 22 N -0.303 5.303 23 C 0.011 3.989 24 C -0.152 4.152 25 C -0.250 4.250 26 C -0.132 4.132 27 O 0.016 5.984 28 N -0.108 5.108 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.156 0.844 42 H 0.065 0.935 43 H 0.132 0.868 44 H 0.211 0.789 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -21.757 -6.248 24.335 33.235 hybrid contribution 1.926 -0.588 0.779 2.159 sum -19.831 -6.836 25.114 32.722 Atomic orbital electron populations 1.21558 0.92376 1.02574 1.01863 1.21352 0.97658 0.98604 0.92796 0.93154 1.21795 0.78196 1.01810 0.98937 1.48121 1.07023 1.60831 1.18056 1.20125 0.88515 0.76861 0.82549 1.90673 1.75543 1.45651 1.32694 1.23366 0.94530 1.05796 1.03731 1.85592 1.03876 1.80632 1.22379 1.23180 0.91299 1.47332 1.07536 0.89972 1.26147 1.05081 0.93890 0.94105 1.70189 1.35955 1.39552 1.08997 0.84944 0.75664 0.78318 0.78992 1.19169 1.20269 1.18245 1.21929 0.98995 0.98175 0.82625 1.22630 0.97762 1.01252 0.98263 1.21531 0.91114 0.98892 0.89022 0.87955 1.60577 1.57706 1.08843 1.03202 1.20288 1.00245 0.93935 0.84474 1.23904 0.92674 0.99982 0.98648 1.23078 0.97957 1.05441 0.98568 1.26873 0.87990 0.98136 1.00192 1.84793 1.17851 1.55822 1.39905 1.73879 1.20749 1.14389 1.01805 0.90989 0.93750 0.91489 0.89221 0.91414 0.87877 0.87388 0.91972 0.88467 0.89605 0.92662 0.88844 0.84385 0.93464 0.86761 0.78913 0.72696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.03 71.98 0.65 -1.23 16 2 C -0.08 -1.53 2.60 -10.71 -0.03 -1.56 16 3 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.12 2.65 5.71 86.36 0.49 3.14 16 5 N -0.61 -16.47 2.97 -818.91 -2.43 -18.91 16 6 C 0.53 20.67 7.72 87.66 0.68 21.35 16 7 O -0.57 -27.34 15.28 -3.04 -0.05 -27.38 16 8 C -0.12 -5.06 4.50 71.24 0.32 -4.74 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.55 -31.54 9.50 67.95 0.65 -30.90 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 14 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 18 C 0.11 1.99 6.34 86.36 0.55 2.54 16 19 C -0.16 -2.46 5.33 30.67 0.16 -2.30 16 20 C 0.10 1.42 1.89 44.94 0.08 1.50 16 21 H 0.10 1.07 7.80 -2.39 -0.02 1.05 16 22 N -0.67 -9.10 5.42 -495.45 -2.68 -11.78 16 23 C 0.14 1.62 6.07 85.56 0.52 2.14 16 24 C 0.01 0.10 6.84 43.58 0.30 0.39 16 25 C -0.23 -2.13 11.12 22.40 0.25 -1.88 16 26 C -0.05 -0.38 12.30 67.18 0.83 0.44 16 27 O 0.08 1.26 11.20 71.68 0.80 2.06 16 28 N -0.40 -7.71 12.07 -49.58 -0.60 -8.31 16 29 H 0.07 1.09 7.57 -2.39 -0.02 1.07 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.98 7.01 -2.39 -0.02 1.96 16 34 H 0.10 3.90 7.70 -2.39 -0.02 3.88 16 35 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 36 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.74 5.93 -2.39 -0.01 1.72 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.13 7.42 -2.38 -0.02 1.12 16 41 H 0.34 5.63 8.47 -89.70 -0.76 4.87 16 42 H 0.05 0.58 7.41 -2.39 -0.02 0.56 16 43 H 0.11 0.87 8.05 -2.39 -0.02 0.85 16 44 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.26 -0.66 8.06 -2.91 -0.02 -0.69 16 Total: -1.00 -81.31 382.43 2.35 -78.96 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.24 Total: 15.27 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.91 Total: -9.91 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -5.43 Total: -95.21 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.76 Total: -25.32 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -81.31 2.35 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.867 kcal (2) G-P(sol) polarization free energy of solvation -81.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds