Wall clock time and date at job start Wed Apr 1 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52264 * 2 1 4 4 C 1.53193 * 109.50753 * 120.07354 * 2 1 3 5 5 N 1.46924 * 108.76463 * 65.30072 * 4 2 1 6 6 C 1.34779 * 120.63267 * 233.59245 * 5 4 2 7 7 O 1.21281 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00137 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47108 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99902 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00175 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99838 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00325 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00135 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46858 * 60.00324 * 14 12 10 16 16 H 1.48497 * 109.47341 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47114 * 300.00484 * 14 12 10 18 18 C 1.46934 * 118.74023 * 53.61657 * 5 4 2 19 19 C 1.53190 * 108.77167 * 306.39156 * 18 5 4 20 20 C 1.53040 * 109.31541 * 54.63658 * 19 18 5 21 21 H 1.08989 * 109.46283 * 58.64006 * 20 19 18 22 22 N 1.46904 * 109.46071 * 178.61630 * 20 19 18 23 23 C 1.46897 * 110.99447 * 275.02362 * 22 20 19 24 24 C 1.50708 * 109.46932 * 179.97438 * 23 22 20 25 25 C 1.41378 * 126.80201 * 94.98563 * 24 23 22 26 26 C 1.35451 * 103.98546 * 180.02562 * 25 24 23 27 27 O 1.34034 * 106.44611 * 359.97438 * 26 25 24 28 28 N 1.20923 * 111.56833 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47790 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 300.08159 * 1 2 3 31 31 H 1.09007 * 109.47534 * 60.08154 * 1 2 3 32 32 H 1.08997 * 109.58631 * 305.51985 * 4 2 1 33 33 H 1.08999 * 109.71497 * 185.15479 * 4 2 1 34 34 H 1.09000 * 109.47115 * 300.00076 * 8 6 5 35 35 H 1.08996 * 109.47134 * 60.00133 * 8 6 5 36 36 H 0.96992 * 120.00363 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.58451 * 186.60228 * 18 5 4 38 38 H 1.08997 * 109.58295 * 66.17624 * 18 5 4 39 39 H 1.08996 * 109.49785 * 294.67985 * 19 18 5 40 40 H 1.09005 * 109.51901 * 174.60273 * 19 18 5 41 41 H 1.00902 * 110.99728 * 38.97395 * 22 20 19 42 42 H 1.09009 * 109.47504 * 60.00105 * 23 22 20 43 43 H 1.09003 * 109.47725 * 299.99729 * 23 22 20 44 44 H 1.08005 * 128.00578 * 359.97438 * 25 24 23 45 45 H 1.08001 * 126.77273 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7236 1.2496 5 7 1.6514 -2.1379 1.1698 6 6 0.9747 -2.7216 2.1786 7 8 0.6815 -2.0784 3.1642 8 6 0.5821 -4.1733 2.0820 9 16 -0.3085 -4.6586 3.5812 10 6 -0.6372 -6.3489 3.2081 11 1 -0.3018 -6.7705 2.2721 12 6 -1.3273 -7.1387 4.1172 13 7 -1.7366 -6.6248 5.2579 14 14 -1.6765 -8.9307 3.7215 15 1 -0.3942 -9.6521 3.5205 16 1 -2.4222 -9.5499 4.8465 17 1 -2.4910 -9.0144 2.4827 18 6 2.0136 -2.9040 -0.0306 19 6 1.5026 -2.1557 -1.2658 20 6 2.0408 -0.7231 -1.2484 21 1 3.1304 -0.7447 -1.2352 22 7 1.5797 -0.0125 -2.4486 23 6 2.4725 -0.2677 -3.5868 24 6 1.9684 0.4755 -4.7971 25 6 2.3841 1.7517 -5.2412 26 6 1.6417 1.9693 -6.3531 27 8 0.8692 0.8855 -6.5116 28 7 1.0646 0.0691 -5.6412 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6012 -0.2727 2.1389 33 1 3.1276 -0.6465 1.3004 34 1 -0.0614 -4.3187 1.2144 35 1 1.4777 -4.7856 1.9768 36 1 -2.2192 -7.1767 5.8930 37 1 1.5548 -3.8916 0.0141 38 1 3.0975 -3.0044 -0.0866 39 1 0.4129 -2.1352 -1.2537 40 1 1.8470 -2.6628 -2.1671 41 1 0.6279 -0.2612 -2.6727 42 1 2.4933 -1.3366 -3.7999 43 1 3.4786 0.0739 -3.3433 44 1 3.1221 2.4028 -4.7963 45 1 1.6679 2.8431 -6.9872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698887128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:58 Heat of formation + Delta-G solvation = 29.932146 kcal Electronic energy + Delta-G solvation = -26751.571207 eV Core-core repulsion = 22898.712247 eV Total energy + Delta-G solvation = -3852.858959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.31207 -40.35648 -38.23316 -36.06465 -34.19766 -32.89609 -32.42908 -32.03671 -30.85089 -29.40190 -27.09581 -26.38183 -25.45128 -23.78367 -23.49975 -23.05877 -21.39050 -20.16134 -18.86106 -18.10209 -17.92296 -17.72907 -16.79480 -15.93946 -15.67101 -15.53258 -15.35313 -15.30490 -14.80501 -14.57701 -14.25560 -13.92022 -13.87749 -13.24124 -13.19241 -13.06494 -13.01124 -12.74599 -12.56849 -12.09673 -11.99348 -11.71247 -11.67682 -11.63374 -11.14395 -11.04278 -11.03956 -10.82093 -10.77277 -10.70859 -10.46936 -10.05363 -9.81312 -9.34458 -9.06036 -8.81306 -8.49298 -8.22692 -6.50031 -6.21420 -3.92140 1.11519 1.79967 2.87876 2.94415 3.06477 3.23207 3.25799 3.28978 3.58877 3.63225 3.95538 4.13298 4.20234 4.42756 4.52819 4.74128 4.76791 4.82439 4.92085 4.92362 4.99561 5.06283 5.13212 5.13457 5.21630 5.31661 5.34836 5.44657 5.51369 5.60181 5.63469 5.64393 5.72198 5.80883 5.85388 5.92833 5.99886 6.06864 6.10971 6.31933 6.56504 6.67374 6.90846 7.56761 7.59393 7.86885 8.34815 8.57986 9.23598 10.85890 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.002117 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.218252 B =13225.734591 C =14159.424268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.618 5.618 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.151 4.151 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.071 0.929 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.114 3.886 19 C -0.169 4.169 20 C 0.095 3.905 21 H 0.081 0.919 22 N -0.676 5.676 23 C 0.136 3.864 24 C 0.019 3.981 25 C -0.218 4.218 26 C -0.063 4.063 27 O 0.100 5.900 28 N -0.362 5.362 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.269 0.731 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.347 0.653 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.172 0.828 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 17.482 -22.959 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.105 0.895 4 C -0.007 4.007 5 N -0.354 5.354 6 C 0.324 3.676 7 O -0.390 6.390 8 C -0.301 4.301 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.010 4.010 19 C -0.209 4.209 20 C -0.014 4.014 21 H 0.099 0.901 22 N -0.308 5.308 23 C 0.007 3.993 24 C -0.140 4.140 25 C -0.240 4.240 26 C -0.145 4.145 27 O 0.032 5.968 28 N -0.065 5.065 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.166 0.834 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.189 0.811 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 10.526 17.883 -21.244 29.697 hybrid contribution 0.501 -2.105 -1.576 2.677 sum 11.027 15.778 -22.821 29.855 Atomic orbital electron populations 1.21801 0.94587 1.02141 1.01699 1.21454 0.96989 0.99565 0.92929 0.89534 1.21606 0.99100 0.81127 0.98902 1.48067 1.57908 1.10969 1.18458 1.20298 0.76414 0.88984 0.81940 1.90689 1.53068 1.64842 1.30418 1.23554 1.04561 0.94513 1.07512 1.85401 1.69688 1.11448 1.16806 1.22813 1.42750 0.95782 1.07053 0.91050 1.24988 0.94884 0.99220 0.94471 1.70005 1.35861 1.36645 1.07731 0.86233 0.78544 0.82705 0.78075 1.19944 1.20796 1.19956 1.21593 1.00028 0.95697 0.83722 1.22718 1.02655 0.97118 0.98411 1.21585 0.99446 0.90638 0.89763 0.90058 1.60635 1.06111 1.61032 1.03009 1.20230 0.97018 0.96844 0.85238 1.23556 0.96718 0.95169 0.98567 1.22732 1.05312 0.97780 0.98173 1.26046 0.94288 0.93868 1.00257 1.84847 1.50193 1.21751 1.39960 1.73875 1.17835 1.14221 1.00602 0.92481 0.92522 0.92527 0.88585 0.91909 0.89430 0.89372 0.92126 0.89165 0.91496 0.90471 0.91052 0.83423 0.93174 0.88676 0.81078 0.76735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.46 37.16 0.31 -1.30 16 2 C -0.09 -0.86 2.91 -90.50 -0.26 -1.12 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.12 1.36 5.83 -3.71 -0.02 1.34 16 5 N -0.62 -8.48 2.41 -172.77 -0.42 -8.90 16 6 C 0.54 10.11 7.72 -10.98 -0.08 10.03 16 7 O -0.52 -11.75 15.28 5.56 0.08 -11.66 16 8 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 14 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 19 C -0.17 -1.50 4.99 -26.61 -0.13 -1.63 16 20 C 0.10 0.77 2.13 -67.67 -0.14 0.63 16 21 H 0.08 0.60 7.80 -51.94 -0.40 0.19 16 22 N -0.68 -5.40 5.80 -107.94 -0.63 -6.02 16 23 C 0.14 0.98 6.07 -4.97 -0.03 0.95 16 24 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 25 C -0.22 -1.32 11.12 -39.38 -0.44 -1.76 16 26 C -0.06 -0.32 12.30 29.74 0.37 0.05 16 27 O 0.10 0.83 11.20 17.19 0.19 1.02 16 28 N -0.36 -3.63 12.07 33.42 0.40 -3.23 16 29 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 7.24 -51.92 -0.38 0.20 16 32 H 0.10 1.34 7.01 -51.93 -0.36 0.97 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 35 H 0.09 1.67 7.94 -51.92 -0.41 1.25 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.79 6.33 -51.93 -0.33 0.46 16 40 H 0.07 0.55 7.42 -51.93 -0.39 0.16 16 41 H 0.35 3.13 7.75 -39.29 -0.30 2.82 16 42 H 0.05 0.37 7.41 -51.92 -0.38 -0.01 16 43 H 0.09 0.54 8.06 -51.93 -0.42 0.13 16 44 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.22 0.13 8.06 -52.49 -0.42 -0.30 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -35.17 376.97 -8.32 -43.49 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.48 Total: 0.45 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.66 Total: -7.93 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.10 Total: -43.65 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.28 Total: -10.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.17 -8.32 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.422 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds