Wall clock time and date at job start Wed Apr 1 2020 00:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46905 * 2 1 4 4 C 1.52998 * 109.46746 * 239.99893 * 2 1 3 5 5 C 1.53002 * 109.46746 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47451 * 60.00007 * 5 4 2 7 7 C 1.53005 * 109.46978 * 299.99969 * 6 5 4 8 8 C 1.53000 * 109.47120 * 119.99726 * 2 1 3 9 9 C 1.52998 * 109.47075 * 300.00137 * 8 2 1 10 10 N 1.46504 * 109.46968 * 174.13455 * 9 8 2 11 11 C 1.36941 * 119.99818 * 183.52240 * 10 9 8 12 12 H 1.07999 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99626 * 179.97438 * 11 10 9 14 14 N 1.31612 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99655 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47284 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46950 * 120.00200 * 15 13 11 18 18 H 1.48497 * 109.47375 * 240.00000 * 15 13 11 19 19 N 1.46504 * 109.47019 * 60.00115 * 8 2 1 20 20 C 1.34776 * 119.99903 * 291.14953 * 19 8 2 21 21 O 1.21646 * 120.00167 * 353.99268 * 20 19 8 22 22 C 1.47180 * 120.00042 * 173.99830 * 20 19 8 23 23 C 1.35094 * 122.48480 * 179.97438 * 22 20 19 24 24 S 1.76188 * 108.21419 * 179.97438 * 23 22 20 25 25 C 1.76047 * 90.16197 * 0.02562 * 24 23 22 26 26 O 1.35496 * 125.18028 * 179.97438 * 25 24 23 27 27 N 1.29255 * 109.63887 * 359.97438 * 25 24 23 28 28 H 1.09008 * 109.47157 * 292.03237 * 1 2 3 29 29 H 1.09003 * 109.47277 * 52.03064 * 1 2 3 30 30 H 1.08997 * 109.46998 * 172.03407 * 1 2 3 31 31 H 1.08998 * 109.47271 * 60.00237 * 4 2 1 32 32 H 1.08993 * 109.47300 * 299.99485 * 4 2 1 33 33 H 1.09006 * 109.47400 * 299.99919 * 5 4 2 34 34 H 1.09002 * 109.47359 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47622 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.46714 * 59.99632 * 6 5 4 37 37 H 1.08993 * 109.47203 * 300.00173 * 7 6 5 38 38 H 1.08998 * 109.47110 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47105 * 294.12742 * 9 8 2 40 40 H 1.08994 * 109.47299 * 54.13316 * 9 8 2 41 41 H 0.96997 * 119.99818 * 3.51380 * 10 9 8 42 42 H 0.97010 * 120.00027 * 179.97438 * 14 13 11 43 43 H 0.96996 * 119.99840 * 111.14210 * 19 8 2 44 44 H 1.07999 * 125.89119 * 359.95485 * 23 22 20 45 45 H 0.96699 * 114.00010 * 269.98996 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 6 3.5706 -0.7203 1.2489 8 6 2.0400 -0.7212 1.2493 9 6 1.5300 0.0001 2.4985 10 7 1.8997 -0.7672 3.6905 11 6 1.4856 -0.3516 4.9279 12 1 0.8869 0.5420 5.0250 13 6 1.8355 -1.0789 6.0573 14 7 2.5647 -2.1681 5.9388 15 14 1.2713 -0.5116 7.7453 16 1 0.4697 0.7309 7.6076 17 1 0.4388 -1.5705 8.3706 18 1 2.4563 -0.2446 8.5994 19 7 1.5517 -2.1024 1.2493 20 6 0.2397 -2.3533 1.4289 21 8 -0.5220 -1.4442 1.6994 22 6 -0.2715 -3.7273 1.2978 23 6 -1.5758 -4.0354 1.4675 24 16 -1.7679 -5.7700 1.2254 25 6 -0.0421 -5.9225 0.9129 26 8 0.5994 -7.0803 0.6231 27 7 0.5197 -4.7619 1.0020 28 1 -0.3634 0.3855 0.9527 29 1 -0.3634 0.6323 -0.8102 30 1 -0.3633 -1.0177 -0.1424 31 1 1.6766 -0.2075 -2.1392 32 1 1.6767 -1.7489 -1.2492 33 1 3.9330 0.3071 -1.2498 34 1 3.9333 -1.2342 -2.1398 35 1 5.1705 -1.4416 -0.0008 36 1 3.7175 -2.4693 -0.0001 37 1 3.9334 0.3075 1.2487 38 1 3.9339 -1.2340 2.1389 39 1 1.9766 0.9929 2.5525 40 1 0.4451 0.0920 2.4475 41 1 2.4376 -1.5696 3.6032 42 1 2.8095 -2.6762 6.7281 43 1 2.1726 -2.8363 1.1200 44 1 -2.3646 -3.3388 1.7102 45 1 0.9296 -7.5520 1.4000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753533764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:57 Heat of formation + Delta-G solvation = -0.964033 kcal Electronic energy + Delta-G solvation = -29214.007478 eV Core-core repulsion = 25359.808760 eV Total energy + Delta-G solvation = -3854.198718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.91227 -39.64952 -37.90459 -36.89169 -34.56010 -33.11485 -32.39304 -31.20004 -29.96631 -29.31014 -26.39807 -25.35848 -24.91294 -22.97943 -22.59303 -21.13022 -20.46566 -19.90028 -19.43855 -18.73179 -17.89652 -17.10568 -16.46210 -16.00410 -15.70487 -15.06436 -14.65505 -14.35285 -14.25278 -14.15192 -13.86097 -13.72660 -13.33472 -13.18749 -12.97981 -12.45316 -12.29521 -12.07619 -11.94721 -11.75151 -11.68020 -11.37343 -11.28618 -11.05902 -10.81082 -10.74645 -10.70320 -10.29975 -10.03496 -9.93015 -9.90785 -9.67111 -9.61485 -9.55479 -9.30828 -8.85944 -8.64795 -8.23518 -6.72420 -5.65905 -2.90709 0.36620 0.87240 1.39178 2.00624 3.27486 3.48439 3.54539 3.56646 3.68850 3.74006 4.68055 4.68263 4.91737 4.94017 4.96145 5.17779 5.25063 5.31718 5.35359 5.58980 5.67127 5.69485 5.72421 5.77808 5.80917 5.87082 6.04794 6.13393 6.20566 6.28956 6.31563 6.34374 6.43373 6.49852 6.56823 6.71215 6.74852 6.81872 6.88218 7.12420 7.28905 7.32281 7.82134 8.05369 8.53715 8.69730 9.64950 10.25350 10.60624 11.57426 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.005480 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.425447 B = 5107.974304 C = 7208.406261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.119 4.119 8 C 0.179 3.821 9 C 0.132 3.868 10 N -0.723 5.723 11 C -0.221 4.221 12 H 0.068 0.932 13 C -0.019 4.019 14 N -0.937 5.937 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.294 1.294 18 H -0.294 1.294 19 N -0.688 5.688 20 C 0.594 3.406 21 O -0.505 6.505 22 C 0.036 3.964 23 C -0.167 4.167 24 S 0.086 5.914 25 C 0.254 3.746 26 O -0.433 6.433 27 N -0.455 5.455 28 H 0.084 0.916 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.067 0.933 41 H 0.381 0.619 42 H 0.251 0.749 43 H 0.403 0.597 44 H 0.195 0.805 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -6.424 -15.913 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.157 4.157 8 C 0.093 3.907 9 C 0.005 3.995 10 N -0.367 5.367 11 C -0.353 4.353 12 H 0.086 0.914 13 C -0.214 4.214 14 N -0.587 5.587 15 Si 0.735 3.265 16 H -0.207 1.207 17 H -0.222 1.222 18 H -0.221 1.221 19 N -0.339 5.339 20 C 0.376 3.624 21 O -0.381 6.381 22 C -0.095 4.095 23 C -0.307 4.307 24 S 0.333 5.667 25 C -0.066 4.066 26 O -0.241 6.241 27 N -0.181 5.181 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.032 0.968 40 H 0.084 0.916 41 H 0.215 0.785 42 H 0.060 0.940 43 H 0.239 0.761 44 H 0.212 0.788 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.383 -6.234 -16.258 17.955 hybrid contribution 0.721 0.043 1.551 1.711 sum -3.662 -6.191 -14.707 16.372 Atomic orbital electron populations 1.22399 0.94000 1.01739 1.01902 1.21500 0.96818 0.99101 0.93826 0.90735 1.21560 0.95179 1.00827 0.97304 1.21534 0.95877 1.00520 0.97553 1.21571 1.00143 0.99454 0.94687 1.21792 0.93563 1.01993 0.98370 1.20661 0.93352 0.81137 0.95544 1.21341 1.00130 0.93062 0.85007 1.42212 1.63293 1.30238 1.00943 1.19272 1.25362 1.06523 0.84105 0.91391 1.24658 1.01379 0.97838 0.97549 1.69669 1.42906 1.18142 1.27973 0.86160 0.77683 0.77621 0.85074 1.20672 1.22190 1.22124 1.45609 1.07424 1.08726 1.72184 1.16689 0.83076 0.84791 0.77811 1.90831 1.57773 1.43049 1.46442 1.20262 0.89716 0.94198 1.05352 1.27096 1.00811 0.97639 1.05198 1.85200 1.11723 1.03861 1.65929 1.24988 0.90589 0.88514 1.02534 1.84826 1.73427 1.29729 1.36073 1.66745 1.37437 0.98476 1.15483 0.89776 0.95282 0.92438 0.92545 0.92072 0.92142 0.92542 0.91971 0.92114 0.90600 0.90141 0.96755 0.91580 0.78514 0.93960 0.76103 0.78820 0.73276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.29 37.16 0.27 -1.95 16 2 C -0.09 -1.34 2.07 -90.62 -0.19 -1.52 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.11 -1.38 5.04 -26.73 -0.13 -1.52 16 5 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 6 C -0.12 -1.50 5.75 -26.73 -0.15 -1.65 16 7 C -0.12 -1.82 4.70 -26.70 -0.13 -1.95 16 8 C 0.18 2.98 0.32 -131.79 -0.04 2.93 16 9 C 0.13 2.80 4.44 -4.04 -0.02 2.78 16 10 N -0.72 -18.48 5.17 -59.91 -0.31 -18.79 16 11 C -0.22 -6.35 9.99 -15.06 -0.15 -6.50 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 14 N -0.94 -28.64 13.06 55.49 0.72 -27.92 16 15 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 N -0.69 -11.58 3.57 -48.72 -0.17 -11.75 16 20 C 0.59 10.68 5.84 -12.63 -0.07 10.61 16 21 O -0.51 -10.00 10.12 5.24 0.05 -9.95 16 22 C 0.04 0.58 6.67 -84.60 -0.56 0.02 16 23 C -0.17 -2.27 10.84 29.61 0.32 -1.95 16 24 S 0.09 0.93 23.42 -107.50 -2.52 -1.59 16 25 C 0.25 3.14 8.88 51.68 0.46 3.60 16 26 O -0.43 -4.18 13.64 -18.18 -0.25 -4.43 16 27 N -0.46 -6.82 10.02 -11.34 -0.11 -6.93 16 28 H 0.08 1.50 5.04 -51.92 -0.26 1.24 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.94 5.32 -51.93 -0.28 0.66 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.77 6.70 -51.93 -0.35 0.42 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.43 7.17 -51.93 -0.37 1.06 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 1.51 4.24 -51.93 -0.22 1.29 16 41 H 0.38 10.17 6.50 -40.82 -0.27 9.91 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.40 6.53 6.56 -40.82 -0.27 6.26 16 44 H 0.19 2.42 8.01 -52.49 -0.42 2.00 16 45 H 0.41 1.97 9.06 45.56 0.41 2.38 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -33.53 360.60 -8.17 -41.70 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -5.34 Total: 15.38 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.65 Total: 0.74 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.13 Total: -65.39 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.19 Total: -14.38 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.52 Total: -1.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.53 -8.17 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.735 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds