Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00173 * 2 1 4 4 C 1.50706 * 109.46949 * 84.99849 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 S 1.65597 * 119.99794 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40474 * 23.54220 * 12 2 1 14 14 O 1.42097 * 106.40414 * 156.46271 * 12 2 1 15 15 N 1.65604 * 107.22116 * 269.99997 * 12 2 1 16 16 C 1.47077 * 120.88477 * 269.72472 * 15 12 2 17 17 C 1.53693 * 108.27989 * 128.75082 * 16 15 12 18 18 N 1.46905 * 109.25689 * 54.08046 * 17 16 15 19 19 C 1.39668 * 111.00391 * 172.60571 * 18 17 16 20 20 C 1.38910 * 120.07278 * 124.02491 * 19 18 17 21 21 C 1.38109 * 119.92397 * 179.77247 * 20 19 18 22 22 C 1.38284 * 120.07272 * 0.51263 * 21 20 19 23 23 C 1.38283 * 120.15306 * 359.74210 * 22 21 20 24 24 C 1.38106 * 120.07240 * 0.02562 * 23 22 21 25 25 C 1.46898 * 111.26819 * 296.76305 * 18 17 16 26 26 C 1.47086 * 120.87605 * 89.99881 * 15 12 2 27 27 H 1.08997 * 109.46693 * 89.99733 * 1 2 3 28 28 H 1.08995 * 109.46999 * 210.00287 * 1 2 3 29 29 H 1.09004 * 109.46987 * 330.00144 * 1 2 3 30 30 H 1.09000 * 109.47175 * 324.99875 * 3 2 1 31 31 H 1.09001 * 109.47297 * 204.99383 * 3 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.62893 * 248.52276 * 16 15 12 34 34 H 1.08996 * 109.62869 * 9.09969 * 16 15 12 35 35 H 1.09004 * 109.64856 * 294.08221 * 17 16 15 36 36 H 1.08998 * 109.42430 * 173.94985 * 17 16 15 37 37 H 1.07993 * 120.04140 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.96520 * 180.25620 * 21 20 19 39 39 H 1.08001 * 119.92519 * 179.76686 * 22 21 20 40 40 H 1.08004 * 119.96948 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.03556 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.49102 * 303.13610 * 25 18 17 43 43 H 1.09001 * 109.48937 * 183.06269 * 25 18 17 44 44 H 1.08994 * 109.63109 * 350.89642 * 26 15 12 45 45 H 1.09002 * 109.62448 * 111.48487 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 1.4155 5 1 1.9247 1.1960 2.2328 6 6 3.0007 2.9503 1.6664 7 7 3.5035 3.6468 0.6706 8 14 3.1797 3.5659 3.4209 9 1 2.5311 2.6068 4.3507 10 1 4.6208 3.6861 3.7588 11 1 2.5290 4.8948 3.5480 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5438 15 7 2.5381 -1.8580 1.5826 16 6 3.7459 -1.4253 2.3018 17 6 3.3118 -0.7723 3.6237 18 7 2.4492 -1.7031 4.3635 19 6 2.1686 -1.2167 5.6423 20 6 0.8511 -1.0549 6.0520 21 6 0.5772 -0.5781 7.3189 22 6 1.6126 -0.2519 8.1754 23 6 2.9253 -0.4067 7.7690 24 6 3.2063 -0.8875 6.5052 25 6 1.2115 -1.9848 3.6240 26 6 1.5565 -2.6824 2.3040 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6502 2.0043 -0.5895 31 1 3.1859 1.1177 -0.4342 32 1 3.9670 4.4804 0.8472 33 1 4.3790 -2.2885 2.5068 34 1 4.2927 -0.7020 1.6969 35 1 2.7622 0.1458 3.4158 36 1 4.1940 -0.5413 4.2207 37 1 0.0420 -1.3055 5.3821 38 1 -0.4469 -0.4560 7.6395 39 1 1.3956 0.1243 9.1642 40 1 3.7317 -0.1514 8.4405 41 1 4.2317 -1.0078 6.1882 42 1 0.6912 -1.0498 3.4163 43 1 0.5706 -2.6333 4.2214 44 1 0.6553 -2.7906 1.7006 45 1 1.9833 -3.6641 2.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028082869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = -24.319493 kcal Electronic energy + Delta-G solvation = -29425.353279 eV Core-core repulsion = 25570.141792 eV Total energy + Delta-G solvation = -3855.211487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17211 -37.77526 -36.76388 -35.52876 -35.26959 -34.46984 -32.57060 -31.62308 -30.42314 -29.52677 -27.84730 -25.93062 -25.12880 -24.29842 -22.50421 -21.82168 -21.69802 -20.26878 -18.49650 -17.76894 -16.98557 -16.88235 -16.43193 -15.87369 -15.56456 -15.38035 -14.80839 -14.69109 -14.40817 -14.28206 -13.89333 -13.59364 -13.50499 -13.42134 -13.30701 -12.57101 -12.34343 -12.25334 -12.18623 -12.11447 -11.79360 -11.64907 -11.46376 -11.25483 -11.22724 -11.19370 -11.14558 -10.85398 -10.72655 -10.69014 -10.55307 -10.12531 -9.94330 -9.58902 -8.89662 -8.75945 -8.56734 -8.08294 -7.70306 -6.18986 -4.25876 1.18544 1.44088 1.45938 3.16862 3.26928 3.27523 3.37686 3.67392 3.98340 4.09120 4.28370 4.77175 4.81443 4.89776 4.98380 5.12350 5.15189 5.17120 5.27570 5.35543 5.45149 5.50215 5.55453 5.59425 5.64577 5.66035 5.78232 5.92578 5.96270 6.02178 6.05334 6.19844 6.28340 6.34309 6.36119 6.46035 6.49410 6.58829 6.81438 6.83518 7.09337 7.28609 7.37285 7.39136 7.57710 7.78541 8.07943 8.79058 9.40234 10.88945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.005878 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.017813 B = 4762.103010 C = 6461.062294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.244 3.756 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.884 3.116 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.283 1.283 12 S 2.786 3.214 13 O -0.998 6.998 14 O -0.975 6.975 15 N -1.007 6.007 16 C 0.137 3.863 17 C 0.035 3.965 18 N -0.487 5.487 19 C 0.122 3.878 20 C -0.173 4.173 21 C -0.095 4.095 22 C -0.155 4.155 23 C -0.096 4.096 24 C -0.142 4.142 25 C 0.037 3.963 26 C 0.131 3.869 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -9.411 10.370 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.711 3.289 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.209 1.209 12 S 2.795 3.205 13 O -0.982 6.982 14 O -0.959 6.959 15 N -0.845 5.845 16 C 0.011 3.989 17 C -0.091 4.091 18 N -0.202 5.202 19 C 0.024 3.976 20 C -0.194 4.194 21 C -0.113 4.113 22 C -0.174 4.174 23 C -0.115 4.115 24 C -0.163 4.163 25 C -0.092 4.092 26 C 0.004 3.996 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.908 -10.182 9.464 14.440 hybrid contribution -0.441 1.468 1.409 2.082 sum -4.348 -8.714 10.873 14.597 Atomic orbital electron populations 1.21207 0.80193 1.01890 1.00648 1.57686 1.14159 1.23539 1.88527 1.19229 0.92195 0.78903 0.97525 1.21589 1.36478 1.06869 0.92856 0.91769 1.24917 0.95268 0.96489 0.96916 1.69933 1.36633 1.15118 1.30758 0.86675 0.78148 0.79148 0.84924 1.19469 1.20660 1.20933 1.01805 0.73151 0.72663 0.72884 1.93531 1.67396 1.60375 1.76896 1.93573 1.40747 1.85245 1.76337 1.58320 1.29364 1.64971 1.31855 1.21495 0.85824 0.99389 0.92223 1.22964 0.97343 0.94490 0.94332 1.58983 1.17126 1.43001 1.01117 1.19011 0.93167 0.94238 0.91171 1.21317 0.95710 1.04417 0.97913 1.20967 0.98946 0.97840 0.93574 1.21005 0.92916 1.03461 0.99986 1.20982 0.96632 0.98245 0.95651 1.20811 0.98513 1.02948 0.94009 1.22667 0.90874 1.00801 0.94855 1.21398 0.92154 0.94102 0.91921 0.93704 0.93113 0.90889 0.94459 0.93097 0.92564 0.91282 0.87711 0.90231 0.89706 0.85616 0.86341 0.86538 0.86171 0.85790 0.92563 0.89441 0.89177 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.31 59.85 0.62 2.40 16 2 N -1.00 -19.96 3.23 -123.05 -0.40 -20.35 16 3 C 0.24 5.82 5.41 -5.19 -0.03 5.80 16 4 C -0.54 -13.27 9.15 -34.44 -0.32 -13.58 16 5 H 0.06 1.52 5.67 -52.49 -0.30 1.23 16 6 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 8 Si 0.88 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 S 2.79 54.34 6.07 -107.50 -0.65 53.69 16 13 O -1.00 -19.94 15.99 -57.17 -0.91 -20.85 16 14 O -0.97 -22.11 15.46 -57.17 -0.88 -22.99 16 15 N -1.01 -16.58 3.38 -112.98 -0.38 -16.96 16 16 C 0.14 2.21 6.56 -3.37 -0.02 2.19 16 17 C 0.03 0.55 5.44 -3.46 -0.02 0.53 16 18 N -0.49 -6.99 4.67 -170.54 -0.80 -7.78 16 19 C 0.12 1.75 5.65 -83.79 -0.47 1.28 16 20 C -0.17 -2.27 8.83 -39.38 -0.35 -2.62 16 21 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 22 C -0.15 -1.80 10.04 -39.55 -0.40 -2.20 16 23 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 24 C -0.14 -1.93 9.14 -39.38 -0.36 -2.29 16 25 C 0.04 0.48 4.30 -3.70 -0.02 0.46 16 26 C 0.13 1.76 6.53 -3.60 -0.02 1.74 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.05 1.34 6.92 -51.93 -0.36 0.99 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.90 7.21 -51.93 -0.37 1.53 16 35 H 0.08 1.51 5.69 -51.93 -0.30 1.21 16 36 H 0.08 1.25 6.66 -51.93 -0.35 0.90 16 37 H 0.13 1.47 5.81 -52.49 -0.30 1.17 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.12 1.55 7.15 -52.49 -0.38 1.18 16 42 H 0.06 0.80 7.81 -51.93 -0.41 0.39 16 43 H 0.09 0.94 6.90 -51.93 -0.36 0.58 16 44 H 0.09 1.14 7.22 -51.93 -0.37 0.76 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -30.86 367.74 -11.45 -42.32 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.41 Total: 3.92 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.28 Total: -7.75 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.84 Total: -68.92 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.80 Total: -43.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 54.34 SS G_CDS: -0.65 Total: 53.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.86 -11.45 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028082869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.996 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds