Wall clock time and date at job start Tue Mar 31 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46623 * 2 1 4 4 C 1.46504 * 119.99887 * 89.99860 * 3 2 1 5 5 C 1.50697 * 109.47240 * 269.99363 * 4 3 2 6 6 O 1.21282 * 119.99628 * 0.02562 * 5 4 3 7 7 N 1.34767 * 120.00019 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47485 * 179.97438 * 8 7 5 10 10 C 1.33386 * 125.20189 * 89.99745 * 9 8 7 11 11 C 1.38420 * 114.92251 * 179.97438 * 10 9 8 12 12 C 1.33391 * 114.92175 * 0.02562 * 11 10 9 13 13 S 1.75878 * 125.20426 * 269.69619 * 9 8 7 14 14 C 1.34774 * 119.99857 * 269.98893 * 3 2 1 15 15 O 1.21283 * 119.99967 * 179.97438 * 14 3 2 16 16 C 1.50695 * 120.00208 * 0.02562 * 14 3 2 17 17 N 1.46500 * 109.47310 * 179.97438 * 16 14 3 18 18 C 1.46498 * 120.00013 * 269.99935 * 17 16 14 19 19 C 1.36936 * 120.00105 * 90.00012 * 17 16 14 20 20 H 1.08003 * 119.99627 * 22.35607 * 19 17 16 21 21 C 1.38810 * 120.00154 * 202.35602 * 19 17 16 22 22 N 1.31613 * 120.00035 * 11.42465 * 21 19 17 23 23 Si 1.86799 * 119.99730 * 191.42672 * 21 19 17 24 24 H 1.48505 * 109.47037 * 60.00300 * 23 21 19 25 25 H 1.48505 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47614 * 300.00180 * 23 21 19 27 27 H 1.09000 * 109.46846 * 60.00341 * 1 2 3 28 28 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47630 * 300.00382 * 1 2 3 30 30 H 1.08993 * 109.47630 * 239.99618 * 2 1 3 31 31 H 1.09000 * 109.46846 * 119.99659 * 2 1 3 32 32 H 1.09004 * 109.47060 * 149.99515 * 4 3 2 33 33 H 1.08998 * 109.47280 * 30.00059 * 4 3 2 34 34 H 0.96999 * 120.00451 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47154 * 59.99724 * 8 7 5 36 36 H 1.08998 * 109.47419 * 300.00125 * 8 7 5 37 37 H 1.08007 * 122.54190 * 359.96228 * 10 9 8 38 38 H 1.08001 * 122.54238 * 180.02562 * 11 10 9 39 39 H 1.07993 * 125.20722 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.47294 * 299.99601 * 16 14 3 41 41 H 1.09007 * 109.46851 * 59.99599 * 16 14 3 42 42 H 1.09002 * 109.46990 * 94.12406 * 18 17 16 43 43 H 1.09003 * 109.47290 * 214.11942 * 18 17 16 44 44 H 1.09002 * 109.47622 * 334.12153 * 18 17 16 45 45 H 0.97001 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 1.2688 5 6 1.0065 2.7823 1.7037 6 8 0.0059 2.7177 1.0213 7 7 0.9952 3.4894 2.8509 8 6 -0.2258 4.1796 3.2740 9 6 0.0252 4.8902 4.5791 10 6 0.4676 6.1427 4.7000 11 6 0.6227 6.5834 6.0030 12 6 0.3068 5.6885 6.9403 13 16 -0.2274 4.1972 6.1758 14 6 2.2430 2.0165 -1.1672 15 8 2.6467 3.1602 -1.1672 16 6 1.9916 1.3062 -2.4723 17 7 2.3086 2.2039 -3.5858 18 6 1.2709 3.0755 -4.1422 19 6 3.5748 2.2282 -4.1065 20 1 4.2297 1.3797 -3.9737 21 6 4.0167 3.3434 -4.8050 22 7 3.3160 4.4571 -4.7780 23 14 5.6060 3.2633 -5.7834 24 1 5.4942 2.2094 -6.8237 25 1 5.8538 4.5753 -6.4334 26 1 6.7330 2.9412 -4.8717 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0642 2.7986 1.1385 33 1 2.5504 1.3453 2.0284 34 1 1.7953 3.5408 3.3969 35 1 -1.0274 3.4526 3.4049 36 1 -0.5146 4.9058 2.5143 37 1 0.6882 6.7659 3.8459 38 1 0.9729 7.5765 6.2426 39 1 0.3651 5.8557 8.0056 40 1 2.6216 0.4186 -2.5301 41 1 0.9435 1.0123 -2.5299 42 1 1.3220 4.0531 -3.6628 43 1 1.4279 3.1883 -5.2150 44 1 0.2906 2.6337 -3.9630 45 1 3.6250 5.2365 -5.2658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:20 Heat of formation + Delta-G solvation = 5.242064 kcal Electronic energy + Delta-G solvation = -27215.537345 eV Core-core repulsion = 23361.607743 eV Total energy + Delta-G solvation = -3853.929602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.01799 -38.71234 -38.03264 -35.52449 -34.85070 -34.69757 -31.52496 -31.00663 -30.26181 -28.35726 -26.75973 -25.77059 -25.36858 -23.23569 -22.99406 -21.48617 -20.55723 -19.64398 -18.59667 -17.91726 -16.84011 -16.66979 -16.45858 -16.29216 -15.76740 -15.26219 -15.02516 -14.54667 -14.34812 -13.71847 -13.59372 -13.38315 -13.30999 -13.21099 -13.04813 -12.98166 -12.73341 -12.54875 -12.35258 -12.10280 -11.95363 -11.58894 -11.31559 -11.15660 -11.10709 -10.79213 -10.73171 -10.56528 -10.23070 -9.96703 -9.93438 -9.80198 -9.15626 -9.13290 -8.94528 -8.83917 -8.40099 -8.17658 -6.66669 -5.60269 -3.07010 0.53731 1.23692 1.61824 2.32053 2.76345 3.08280 3.45205 3.49584 3.51076 3.61017 3.73438 4.31237 4.58204 4.70021 4.84619 5.00853 5.05487 5.18489 5.19871 5.30870 5.38869 5.48993 5.54895 5.59685 5.61608 5.71118 5.76423 5.82794 5.89501 6.04596 6.09943 6.10528 6.26510 6.31406 6.35896 6.59947 6.85414 6.91431 7.46456 7.49070 7.83560 7.94000 8.02948 8.30212 8.47860 9.15634 9.32619 9.94115 10.42533 11.44198 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002469 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.195704 B =11338.229434 C =12337.950990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.613 5.613 4 C 0.098 3.902 5 C 0.497 3.503 6 O -0.518 6.518 7 N -0.734 5.734 8 C 0.195 3.805 9 C -0.199 4.199 10 C -0.116 4.116 11 C -0.137 4.137 12 C -0.210 4.210 13 S 0.109 5.891 14 C 0.481 3.519 15 O -0.505 6.505 16 C 0.136 3.864 17 N -0.573 5.573 18 C 0.165 3.835 19 C -0.258 4.258 20 H 0.068 0.932 21 C 0.008 3.992 22 N -0.896 5.896 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.400 0.600 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.048 0.952 44 H -0.004 1.004 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -4.238 24.381 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.351 5.351 4 C -0.030 4.030 5 C 0.283 3.717 6 O -0.392 6.392 7 N -0.389 5.389 8 C 0.070 3.930 9 C -0.317 4.317 10 C -0.147 4.147 11 C -0.167 4.167 12 C -0.346 4.346 13 S 0.372 5.628 14 C 0.267 3.733 15 O -0.376 6.376 16 C 0.004 3.996 17 N -0.293 5.293 18 C 0.020 3.980 19 C -0.388 4.388 20 H 0.086 0.914 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.210 1.210 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.014 0.986 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.851 -4.855 24.183 25.885 hybrid contribution 1.702 1.737 -0.247 2.444 sum -6.149 -3.118 23.937 24.910 Atomic orbital electron populations 1.22218 0.95947 1.00717 1.03635 1.21468 0.94618 0.82464 1.02464 1.48370 1.68443 1.13883 1.04451 1.21137 0.95174 0.98156 0.88565 1.21600 0.91476 0.78842 0.79827 1.90701 1.35150 1.60698 1.52664 1.46121 1.14445 1.53330 1.25016 1.19565 0.87898 0.95603 0.89960 1.24530 1.10282 0.98857 0.98012 1.20306 1.00870 0.95250 0.98320 1.20226 1.03401 1.01181 0.91902 1.25720 1.08170 0.97118 1.03557 1.84369 1.65112 1.15876 0.97408 1.23707 0.75816 0.88151 0.85634 1.90683 1.42825 1.17744 1.86393 1.21059 0.99506 0.94369 0.84667 1.43895 1.08948 1.45713 1.30708 1.20839 0.85739 0.93161 0.98219 1.19098 0.91107 0.98936 1.29623 0.91387 1.25089 0.97910 0.94823 1.01326 1.70099 1.39078 1.01100 1.43686 0.86332 0.83492 0.76659 0.79946 1.21006 1.21649 1.21003 0.92093 0.92755 0.91979 0.90057 0.91473 0.87377 0.88574 0.76595 0.90617 0.89619 0.83823 0.84047 0.81789 0.91064 0.91383 0.94899 0.93311 0.98570 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.50 37.16 0.35 -1.78 16 2 C 0.11 1.41 5.98 -4.04 -0.02 1.39 16 3 N -0.61 -10.09 2.02 -175.06 -0.35 -10.45 16 4 C 0.10 1.35 5.93 -5.19 -0.03 1.32 16 5 C 0.50 7.28 7.81 -10.99 -0.09 7.19 16 6 O -0.52 -9.58 14.02 5.56 0.08 -9.50 16 7 N -0.73 -8.13 5.55 -61.47 -0.34 -8.47 16 8 C 0.20 2.08 6.16 -5.19 -0.03 2.04 16 9 C -0.20 -1.79 5.88 -36.00 -0.21 -2.00 16 10 C -0.12 -1.00 10.05 -41.21 -0.41 -1.41 16 11 C -0.14 -1.01 10.18 -41.21 -0.42 -1.43 16 12 C -0.21 -1.44 11.23 29.04 0.33 -1.12 16 13 S 0.11 0.84 23.33 -107.50 -2.51 -1.67 16 14 C 0.48 10.57 7.74 -10.99 -0.09 10.49 16 15 O -0.51 -13.80 16.01 5.56 0.09 -13.71 16 16 C 0.14 2.95 4.74 -5.20 -0.02 2.93 16 17 N -0.57 -15.46 2.41 -182.50 -0.44 -15.90 16 18 C 0.16 4.45 9.01 59.85 0.54 4.99 16 19 C -0.26 -7.45 9.67 -15.06 -0.15 -7.59 16 20 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 21 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 22 N -0.90 -27.86 10.59 55.49 0.59 -27.27 16 23 Si 0.91 22.71 29.57 -169.99 -5.03 17.69 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 27 H 0.06 0.92 7.22 -51.93 -0.37 0.54 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 30 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 31 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 32 H 0.11 1.63 7.42 -51.93 -0.39 1.25 16 33 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 34 H 0.40 3.46 8.46 -40.82 -0.35 3.12 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.07 1.39 7.29 -51.93 -0.38 1.01 16 41 H 0.07 1.33 6.91 -51.92 -0.36 0.97 16 42 H 0.03 0.99 7.42 -51.93 -0.39 0.61 16 43 H 0.05 1.36 7.18 -51.93 -0.37 0.99 16 44 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -38.18 386.95 -9.01 -47.19 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.58 Total: 1.11 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -0.34 Total: 15.15 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.55 Total: -62.08 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.69 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.18 -9.01 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.432 kcal (2) G-P(sol) polarization free energy of solvation -38.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds