Wall clock time and date at job start Tue Mar 31 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46623 * 2 1 4 4 C 1.46504 * 119.99887 * 89.99860 * 3 2 1 5 5 C 1.50697 * 109.47240 * 269.99363 * 4 3 2 6 6 O 1.21282 * 119.99628 * 0.02562 * 5 4 3 7 7 N 1.34767 * 120.00019 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47485 * 179.97438 * 8 7 5 10 10 C 1.33386 * 125.20189 * 89.99745 * 9 8 7 11 11 C 1.38420 * 114.92251 * 179.97438 * 10 9 8 12 12 C 1.33391 * 114.92175 * 0.02562 * 11 10 9 13 13 S 1.75878 * 125.20426 * 269.69619 * 9 8 7 14 14 C 1.34774 * 119.99857 * 269.98893 * 3 2 1 15 15 O 1.21283 * 119.99967 * 179.97438 * 14 3 2 16 16 C 1.50695 * 120.00208 * 0.02562 * 14 3 2 17 17 N 1.46500 * 109.47310 * 179.97438 * 16 14 3 18 18 C 1.46498 * 120.00013 * 269.99935 * 17 16 14 19 19 C 1.36936 * 120.00105 * 90.00012 * 17 16 14 20 20 H 1.08003 * 119.99627 * 22.35607 * 19 17 16 21 21 C 1.38810 * 120.00154 * 202.35602 * 19 17 16 22 22 N 1.31613 * 120.00035 * 11.42465 * 21 19 17 23 23 Si 1.86799 * 119.99730 * 191.42672 * 21 19 17 24 24 H 1.48505 * 109.47037 * 60.00300 * 23 21 19 25 25 H 1.48505 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47614 * 300.00180 * 23 21 19 27 27 H 1.09000 * 109.46846 * 60.00341 * 1 2 3 28 28 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47630 * 300.00382 * 1 2 3 30 30 H 1.08993 * 109.47630 * 239.99618 * 2 1 3 31 31 H 1.09000 * 109.46846 * 119.99659 * 2 1 3 32 32 H 1.09004 * 109.47060 * 149.99515 * 4 3 2 33 33 H 1.08998 * 109.47280 * 30.00059 * 4 3 2 34 34 H 0.96999 * 120.00451 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47154 * 59.99724 * 8 7 5 36 36 H 1.08998 * 109.47419 * 300.00125 * 8 7 5 37 37 H 1.08007 * 122.54190 * 359.96228 * 10 9 8 38 38 H 1.08001 * 122.54238 * 180.02562 * 11 10 9 39 39 H 1.07993 * 125.20722 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.47294 * 299.99601 * 16 14 3 41 41 H 1.09007 * 109.46851 * 59.99599 * 16 14 3 42 42 H 1.09002 * 109.46990 * 94.12406 * 18 17 16 43 43 H 1.09003 * 109.47290 * 214.11942 * 18 17 16 44 44 H 1.09002 * 109.47622 * 334.12153 * 18 17 16 45 45 H 0.97001 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0719 1.2688 5 6 1.0065 2.7823 1.7037 6 8 0.0059 2.7177 1.0213 7 7 0.9952 3.4894 2.8509 8 6 -0.2258 4.1796 3.2740 9 6 0.0252 4.8902 4.5791 10 6 0.4676 6.1427 4.7000 11 6 0.6227 6.5834 6.0030 12 6 0.3068 5.6885 6.9403 13 16 -0.2274 4.1972 6.1758 14 6 2.2430 2.0165 -1.1672 15 8 2.6467 3.1602 -1.1672 16 6 1.9916 1.3062 -2.4723 17 7 2.3086 2.2039 -3.5858 18 6 1.2709 3.0755 -4.1422 19 6 3.5748 2.2282 -4.1065 20 1 4.2297 1.3797 -3.9737 21 6 4.0167 3.3434 -4.8050 22 7 3.3160 4.4571 -4.7780 23 14 5.6060 3.2633 -5.7834 24 1 5.4942 2.2094 -6.8237 25 1 5.8538 4.5753 -6.4334 26 1 6.7330 2.9412 -4.8717 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0642 2.7986 1.1385 33 1 2.5504 1.3453 2.0284 34 1 1.7953 3.5408 3.3969 35 1 -1.0274 3.4526 3.4049 36 1 -0.5146 4.9058 2.5143 37 1 0.6882 6.7659 3.8459 38 1 0.9729 7.5765 6.2426 39 1 0.3651 5.8557 8.0056 40 1 2.6216 0.4186 -2.5301 41 1 0.9435 1.0123 -2.5299 42 1 1.3220 4.0531 -3.6628 43 1 1.4279 3.1883 -5.2150 44 1 0.2906 2.6337 -3.9630 45 1 3.6250 5.2365 -5.2658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:17 Heat of formation + Delta-G solvation = -21.251847 kcal Electronic energy + Delta-G solvation = -27216.686207 eV Core-core repulsion = 23361.607743 eV Total energy + Delta-G solvation = -3855.078464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.31196 -40.06499 -38.83518 -37.18978 -36.59337 -35.79750 -33.34705 -32.29035 -31.23119 -29.86392 -28.15116 -27.78828 -26.51831 -24.30458 -23.96084 -23.26856 -21.78988 -20.31938 -19.99979 -18.85848 -18.77159 -18.07426 -17.67800 -17.45590 -16.88650 -16.50625 -16.21754 -16.02441 -15.91689 -15.24893 -15.00095 -14.80262 -14.67844 -14.39519 -14.26169 -13.93487 -13.76508 -13.67923 -13.53258 -13.26893 -13.10838 -13.04412 -12.80959 -12.74695 -12.59829 -12.40694 -12.29038 -12.07245 -11.89001 -11.74415 -11.70223 -11.18330 -10.84391 -10.50163 -10.18610 -9.83994 -9.51490 -9.43610 -8.80838 -7.79435 -5.29865 -0.09935 0.61323 1.01800 1.45477 1.49642 1.56130 1.58952 1.65535 1.86941 2.12551 2.49561 2.54932 3.35869 3.56114 3.68434 3.83613 3.93721 4.13531 4.18943 4.21772 4.31213 4.45076 4.48709 4.52556 4.62641 4.64022 4.64519 4.69869 4.75199 4.77640 4.95986 5.08154 5.13851 5.26494 5.28974 5.29980 5.48641 5.54136 5.60605 5.69609 5.70327 6.27965 6.48036 6.55481 7.12626 7.21086 7.51775 7.84940 8.28334 9.24881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002469 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.195704 B =11338.229434 C =12337.950990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.095 3.905 5 C 0.495 3.505 6 O -0.563 6.563 7 N -0.717 5.717 8 C 0.200 3.800 9 C -0.217 4.217 10 C -0.120 4.120 11 C -0.149 4.149 12 C -0.200 4.200 13 S 0.120 5.880 14 C 0.480 3.520 15 O -0.572 6.572 16 C 0.133 3.867 17 N -0.593 5.593 18 C 0.183 3.817 19 C -0.263 4.263 20 H 0.080 0.920 21 C -0.058 4.058 22 N -0.938 5.938 23 Si 0.976 3.024 24 H -0.268 1.268 25 H -0.298 1.298 26 H -0.277 1.277 27 H 0.030 0.970 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.152 0.848 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.191 0.809 40 H 0.099 0.901 41 H 0.090 0.910 42 H -0.012 1.012 43 H 0.029 0.971 44 H 0.027 0.973 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -6.695 26.954 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.339 5.339 4 C -0.032 4.032 5 C 0.281 3.719 6 O -0.441 6.441 7 N -0.372 5.372 8 C 0.074 3.926 9 C -0.335 4.335 10 C -0.152 4.152 11 C -0.179 4.179 12 C -0.336 4.336 13 S 0.384 5.616 14 C 0.267 3.733 15 O -0.449 6.449 16 C 0.002 3.998 17 N -0.314 5.314 18 C 0.038 3.962 19 C -0.393 4.393 20 H 0.098 0.902 21 C -0.253 4.253 22 N -0.583 5.583 23 Si 0.804 3.196 24 H -0.194 1.194 25 H -0.224 1.224 26 H -0.203 1.203 27 H 0.049 0.951 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.157 0.843 38 H 0.177 0.823 39 H 0.208 0.792 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.006 0.994 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.080 -7.400 26.857 28.744 hybrid contribution 1.357 2.409 -0.820 2.884 sum -5.723 -4.991 26.037 27.122 Atomic orbital electron populations 1.22132 0.96098 1.02062 1.01461 1.21859 0.94390 0.80196 1.05204 1.48125 1.66596 1.15234 1.03969 1.21398 0.94234 0.99182 0.88406 1.21745 0.91097 0.78930 0.80174 1.90691 1.36717 1.62536 1.54178 1.45978 1.15249 1.51873 1.24058 1.19435 0.87553 0.95093 0.90474 1.24338 1.11866 0.99239 0.98015 1.20465 1.00501 0.95128 0.99114 1.20406 1.03914 1.02289 0.91260 1.26091 1.06498 0.96215 1.04781 1.84313 1.64921 1.16224 0.96146 1.23314 0.75353 0.87188 0.87419 1.90666 1.46270 1.20391 1.87595 1.21243 1.01369 0.93793 0.83391 1.44048 1.08346 1.45959 1.33041 1.20496 0.87521 0.91716 0.96511 1.19540 0.91763 0.99069 1.28971 0.90206 1.25996 1.01626 0.94577 1.03060 1.70331 1.41105 1.01753 1.45156 0.85217 0.79318 0.76488 0.78600 1.19356 1.22408 1.20263 0.95056 0.89540 0.93393 0.88959 0.87131 0.88831 0.83083 0.74973 0.90776 0.91751 0.84268 0.82278 0.79196 0.88285 0.89228 0.99369 0.95271 0.95501 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.50 71.98 0.68 -3.01 16 2 C 0.11 2.24 5.98 86.38 0.52 2.76 16 3 N -0.60 -18.87 2.02 -826.16 -1.67 -20.54 16 4 C 0.09 2.45 5.93 85.63 0.51 2.96 16 5 C 0.49 14.28 7.81 87.66 0.68 14.97 16 6 O -0.56 -21.21 14.02 -3.04 -0.04 -21.26 16 7 N -0.72 -15.54 5.55 -466.79 -2.59 -18.13 16 8 C 0.20 4.32 6.16 85.63 0.53 4.85 16 9 C -0.22 -3.79 5.88 24.59 0.14 -3.64 16 10 C -0.12 -2.00 10.05 21.21 0.21 -1.79 16 11 C -0.15 -1.95 10.18 21.22 0.22 -1.73 16 12 C -0.20 -2.25 11.23 66.72 0.75 -1.50 16 13 S 0.12 1.64 23.33 -56.49 -1.32 0.32 16 14 C 0.48 21.10 7.74 87.66 0.68 21.77 16 15 O -0.57 -32.34 16.01 -3.04 -0.05 -32.39 16 16 C 0.13 5.63 4.74 85.63 0.41 6.03 16 17 N -0.59 -32.40 2.41 -731.30 -1.76 -34.17 16 18 C 0.18 10.24 9.01 127.77 1.15 11.39 16 19 C -0.26 -15.31 9.67 84.03 0.81 -14.50 16 20 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 21 C -0.06 -3.47 5.13 84.86 0.44 -3.03 16 22 N -0.94 -60.81 10.59 21.65 0.23 -60.58 16 23 Si 0.98 47.47 29.57 68.60 2.03 49.50 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H 0.03 0.90 7.22 -2.39 -0.02 0.88 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.26 6.39 -2.39 -0.02 1.25 16 30 H 0.09 1.81 6.44 -2.39 -0.02 1.80 16 31 H 0.11 1.50 7.89 -2.39 -0.02 1.48 16 32 H 0.09 2.78 7.42 -2.38 -0.02 2.77 16 33 H 0.15 2.20 7.89 -2.39 -0.02 2.18 16 34 H 0.41 6.64 8.46 -92.71 -0.78 5.86 16 35 H 0.07 1.62 8.14 -2.38 -0.02 1.61 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 40 H 0.10 3.61 7.29 -2.39 -0.02 3.59 16 41 H 0.09 3.38 6.91 -2.38 -0.02 3.37 16 42 H -0.01 -0.78 7.42 -2.39 -0.02 -0.80 16 43 H 0.03 1.69 7.18 -2.39 -0.02 1.67 16 44 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 45 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -88.46 386.95 2.77 -85.69 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.22 Total: 16.02 kcal Atomic # 6 Polarization: 27.80 SS G_CDS: 7.73 Total: 35.53 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.80 Total: -133.41 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.09 Total: -53.65 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.32 Total: 0.32 kcal Total: -88.46 2.77 -85.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.439 kcal (2) G-P(sol) polarization free energy of solvation -88.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds